Wall clock time and date at job start Wed Apr 1 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 H 1.09004 * 115.55117 * 29.33260 * 3 2 1 5 5 C 1.52999 * 117.51534 * 243.62965 * 3 2 1 6 6 C 1.53000 * 117.49766 * 175.00063 * 3 2 1 7 7 H 1.09001 * 117.49808 * 0.02562 * 6 3 2 8 8 C 1.50693 * 117.50207 * 215.00027 * 6 3 2 9 9 O 1.21291 * 119.99809 * 0.02562 * 8 6 3 10 10 N 1.34776 * 120.00485 * 179.97438 * 8 6 3 11 11 C 1.46499 * 120.00270 * 180.02562 * 10 8 6 12 12 H 1.09000 * 112.84719 * 334.39334 * 11 10 8 13 13 C 1.53776 * 113.61303 * 105.58612 * 11 10 8 14 14 C 1.53960 * 87.01916 * 139.95166 * 13 11 10 15 15 C 1.53003 * 113.61023 * 89.19683 * 14 13 11 16 16 N 1.46505 * 109.46830 * 76.91546 * 15 14 13 17 17 C 1.36938 * 119.99717 * 183.25572 * 16 15 14 18 18 H 1.08002 * 120.00543 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99912 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99990 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00361 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46811 * 59.99539 * 21 19 17 23 23 H 1.48493 * 109.47479 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47251 * 300.00225 * 21 19 17 25 25 C 1.50698 * 113.66691 * 220.06731 * 14 13 11 26 26 C 1.38239 * 119.99708 * 150.92608 * 25 14 13 27 27 C 1.38234 * 119.99742 * 179.78593 * 26 25 14 28 28 C 1.38230 * 120.00295 * 0.44182 * 27 26 25 29 29 C 1.38239 * 119.99873 * 359.81273 * 28 27 26 30 30 C 1.38226 * 120.00167 * 331.19729 * 25 14 13 31 31 C 1.53777 * 113.61671 * 203.19700 * 11 10 8 32 32 H 1.08995 * 109.46915 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46939 * 300.00065 * 1 2 3 34 34 H 1.08998 * 109.47223 * 60.00021 * 1 2 3 35 35 H 1.08998 * 109.46939 * 239.99935 * 2 1 3 36 36 H 1.08998 * 109.47223 * 119.99979 * 2 1 3 37 37 H 1.09002 * 117.50052 * 145.03096 * 5 3 2 38 38 H 1.08998 * 117.50370 * 0.02562 * 5 3 2 39 39 H 0.97004 * 119.99811 * 359.72799 * 10 8 6 40 40 H 1.08998 * 113.62134 * 254.52720 * 13 11 10 41 41 H 1.08998 * 113.61922 * 25.43617 * 13 11 10 42 42 H 1.09004 * 109.47291 * 196.90952 * 15 14 13 43 43 H 1.08999 * 109.47633 * 316.91158 * 15 14 13 44 44 H 0.96998 * 120.00497 * 3.24581 * 16 15 14 45 45 H 0.97001 * 120.00140 * 180.02562 * 20 19 17 46 46 H 1.08000 * 119.99758 * 0.02562 * 26 25 14 47 47 H 1.08006 * 119.99678 * 180.27471 * 27 26 25 48 48 H 1.08000 * 120.00491 * 179.83529 * 28 27 26 49 49 H 1.08001 * 120.00279 * 180.02562 * 29 28 27 50 50 H 1.07998 * 120.00424 * 359.97438 * 30 25 14 51 51 H 1.09006 * 113.60710 * 334.56637 * 31 11 10 52 52 H 1.08998 * 113.61957 * 105.37914 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1716 0.4818 5 6 2.8438 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1956 8 6 4.0228 2.8618 0.8918 9 8 3.2157 3.6161 1.3926 10 7 5.3424 3.0998 1.0280 11 6 5.8019 4.2697 1.7804 12 1 5.0696 5.0770 1.7965 13 6 6.3702 3.9259 3.1673 14 6 7.4551 4.9842 2.8964 15 6 7.0639 6.3925 3.3488 16 7 7.1999 6.4932 4.8041 17 6 6.8396 7.6474 5.4470 18 1 6.4556 8.4835 4.8814 19 6 6.9679 7.7427 6.8259 20 7 7.4354 6.7236 7.5154 21 14 6.4772 9.3173 7.7031 22 1 5.0391 9.5936 7.4566 23 1 6.7083 9.1640 9.1619 24 1 7.2933 10.4459 7.1880 25 6 8.8275 4.5781 3.3680 26 6 9.9509 5.0588 2.7215 27 6 11.2099 4.6898 3.1569 28 6 11.3455 3.8329 4.2330 29 6 10.2221 3.3479 4.8762 30 6 8.9631 3.7204 4.4435 31 6 7.2184 4.7306 1.3983 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.7211 2.9434 -1.5339 38 1 3.0092 1.1869 -2.0161 39 1 5.9879 2.4940 0.6314 40 1 5.7026 4.1842 3.9892 41 1 6.7595 2.9104 3.2402 42 1 7.7179 7.1223 2.8714 43 1 6.0302 6.5911 3.0658 44 1 7.5449 5.7425 5.3121 45 1 7.5247 6.7901 8.4790 46 1 9.8448 5.7258 1.8787 47 1 12.0876 5.0690 2.6545 48 1 12.3291 3.5424 4.5715 49 1 10.3280 2.6787 5.7172 50 1 8.0854 3.3416 4.9462 51 1 7.8399 3.9353 0.9865 52 1 7.2343 5.6367 0.7927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105439996.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:15 Heat of formation + Delta-G solvation = 12.985863 kcal Electronic energy + Delta-G solvation = -29544.696791 eV Core-core repulsion = 25702.295082 eV Total energy + Delta-G solvation = -3842.401708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.81329 -40.69824 -39.00952 -37.86369 -36.28614 -34.76280 -32.98716 -32.64025 -31.72635 -31.56001 -28.24217 -26.91300 -26.23792 -24.88837 -24.47936 -23.99186 -23.05064 -22.17921 -21.53106 -21.06654 -19.84198 -18.95577 -18.22990 -18.09015 -17.10640 -16.67370 -16.26716 -16.04169 -15.90823 -15.73070 -15.52271 -15.22466 -15.15551 -15.08204 -14.70400 -14.48554 -14.19417 -13.78659 -13.52981 -13.46732 -13.41928 -13.28097 -13.14060 -12.97764 -12.89251 -12.71908 -12.41296 -12.30845 -12.18759 -12.07612 -12.00897 -11.92279 -11.74578 -11.31377 -11.27143 -11.22742 -11.01691 -10.90660 -10.71443 -10.03199 -9.67803 -9.45524 -8.97511 -7.94460 -5.22180 0.59426 0.63232 1.43450 1.47032 1.47455 1.52776 2.14917 2.54156 2.86321 2.99005 3.35864 3.44705 3.46698 3.63362 3.76657 3.77073 3.80975 3.89214 4.09117 4.18961 4.21685 4.26348 4.29313 4.36610 4.37997 4.48767 4.51109 4.59333 4.69881 4.74258 4.79038 4.79306 4.81946 4.89298 4.94698 4.95077 5.00743 5.09158 5.14877 5.15921 5.20273 5.23957 5.27936 5.29929 5.30718 5.47135 5.49687 5.58035 5.70841 5.73180 5.85569 6.25226 6.27302 6.59112 7.28438 7.34504 8.11840 8.37038 9.28580 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.002791 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.103111 B =10031.413871 C =12035.508234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.131 4.131 4 H 0.085 0.915 5 C -0.130 4.130 6 C -0.192 4.192 7 H 0.153 0.847 8 C 0.532 3.468 9 O -0.593 6.593 10 N -0.698 5.698 11 C 0.129 3.871 12 H 0.086 0.914 13 C -0.134 4.134 14 C -0.044 4.044 15 C 0.176 3.824 16 N -0.738 5.738 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.074 4.074 20 N -0.965 5.965 21 Si 0.971 3.029 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.277 1.277 25 C -0.056 4.056 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.134 4.134 29 C -0.130 4.130 30 C -0.125 4.125 31 C -0.102 4.102 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.419 0.581 40 H 0.038 0.962 41 H 0.098 0.902 42 H 0.024 0.976 43 H 0.018 0.982 44 H 0.379 0.621 45 H 0.250 0.750 46 H 0.133 0.867 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.127 0.873 50 H 0.103 0.897 51 H 0.117 0.883 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 -16.658 -21.383 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.150 4.150 4 H 0.104 0.896 5 C -0.167 4.167 6 C -0.213 4.213 7 H 0.171 0.829 8 C 0.321 3.679 9 O -0.474 6.474 10 N -0.348 5.348 11 C 0.024 3.976 12 H 0.104 0.896 13 C -0.173 4.173 14 C -0.045 4.045 15 C 0.050 3.950 16 N -0.381 5.381 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.266 4.266 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.203 1.203 25 C -0.056 4.056 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.151 4.151 29 C -0.148 4.148 30 C -0.143 4.143 31 C -0.140 4.140 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.256 0.744 40 H 0.057 0.943 41 H 0.116 0.884 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.212 0.788 45 H 0.059 0.941 46 H 0.151 0.849 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.145 0.855 50 H 0.121 0.879 51 H 0.136 0.864 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.701 -15.948 -21.036 26.407 hybrid contribution -0.092 0.782 1.575 1.761 sum -0.793 -15.166 -19.461 24.685 Atomic orbital electron populations 1.21755 0.95258 1.02234 1.01649 1.21148 0.96241 0.92146 1.03055 1.22483 0.91034 0.99439 1.02003 0.89636 1.23193 1.00042 1.03309 0.90193 1.22366 0.98181 0.98179 1.02524 0.82919 1.20437 0.82383 0.85981 0.79119 1.90710 1.55348 1.50684 1.50672 1.45769 1.06874 1.27611 1.54566 1.22245 0.95539 0.88614 0.91231 0.89571 1.23488 0.97078 0.99341 0.97378 1.20686 0.91745 0.94541 0.97484 1.20560 0.96838 0.93120 0.84508 1.42466 1.77698 1.15549 1.02361 1.19577 1.34227 0.93436 0.90584 0.91044 1.25524 1.03022 1.00880 0.97201 1.69821 1.53547 1.32078 1.06142 0.85253 0.78064 0.79569 0.77136 1.20739 1.21991 1.20295 1.19495 0.94196 0.96223 0.95678 1.21135 0.92061 0.99841 1.00883 1.21398 0.97669 0.97839 0.97272 1.21379 0.98954 0.98312 0.96504 1.21317 0.92690 1.00814 0.99932 1.21051 0.97625 0.99022 0.96627 1.23294 0.93890 1.03171 0.93684 0.91358 0.93898 0.92311 0.89485 0.91545 0.89542 0.84595 0.74360 0.94280 0.88374 0.95863 0.96388 0.78825 0.94115 0.84931 0.83781 0.84136 0.85490 0.87856 0.86447 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.87 71.98 0.71 -1.19 16 2 C -0.09 -1.09 6.22 30.60 0.19 -0.90 16 3 C -0.13 -2.28 5.25 -10.79 -0.06 -2.34 16 4 H 0.09 2.07 7.60 -2.39 -0.02 2.05 16 5 C -0.13 -1.75 9.88 30.59 0.30 -1.45 16 6 C -0.19 -3.19 5.91 -11.54 -0.07 -3.26 16 7 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 8 C 0.53 13.75 7.61 87.65 0.67 14.41 16 9 O -0.59 -21.99 15.88 -3.06 -0.05 -22.04 16 10 N -0.70 -14.90 5.36 -440.05 -2.36 -17.26 16 11 C 0.13 3.54 3.86 45.51 0.18 3.72 16 12 H 0.09 2.95 6.98 -2.39 -0.02 2.93 16 13 C -0.13 -4.30 6.01 31.18 0.19 -4.12 16 14 C -0.04 -1.40 0.73 -52.34 -0.04 -1.44 16 15 C 0.18 7.39 5.55 86.38 0.48 7.87 16 16 N -0.74 -39.25 5.40 -343.43 -1.86 -41.10 16 17 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 20 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 21 Si 0.97 48.18 29.55 68.60 2.03 50.20 16 22 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 C -0.06 -1.81 4.22 -19.87 -0.08 -1.90 16 26 C -0.12 -3.47 9.38 22.27 0.21 -3.26 16 27 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 28 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 29 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 30 C -0.13 -4.33 8.12 22.27 0.18 -4.15 16 31 C -0.10 -2.32 6.59 31.12 0.21 -2.12 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.70 7.88 -2.39 -0.02 0.68 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.14 0.96 8.03 -2.39 -0.02 0.95 16 39 H 0.42 5.62 8.71 -92.71 -0.81 4.82 16 40 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.10 2.78 7.47 -2.39 -0.02 2.76 16 42 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.02 0.79 7.32 -2.39 -0.02 0.77 16 44 H 0.38 21.24 6.32 -92.71 -0.59 20.65 16 45 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.13 3.26 8.01 -2.91 -0.02 3.23 16 47 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 48 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 49 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 50 H 0.10 3.81 7.05 -2.91 -0.02 3.79 16 51 H 0.12 2.00 8.06 -2.38 -0.02 1.98 16 52 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 Total: -1.00 -78.12 422.36 2.60 -75.52 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -0.48 Total: 43.31 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 5.04 Total: -27.81 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -3.93 Total: -119.18 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.20 kcal Total: -78.12 2.60 -75.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105439996.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.501 kcal (2) G-P(sol) polarization free energy of solvation -78.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds