Wall clock time and date at job start Wed Apr 1 2020 01:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.52999 * 109.47366 * 120.00360 * 2 1 3 5 5 H 1.09001 * 113.10392 * 289.02946 * 4 2 1 6 6 N 1.47849 * 113.84440 * 157.03249 * 4 2 1 7 7 C 1.34778 * 134.35934 * 42.25567 * 6 4 2 8 8 O 1.21279 * 119.99880 * 5.57376 * 7 6 4 9 9 C 1.50706 * 120.00118 * 185.58334 * 7 6 4 10 10 C 1.53001 * 109.47136 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46670 * 179.97438 * 10 9 7 12 12 F 1.39902 * 109.46666 * 180.02562 * 11 10 9 13 13 C 1.47854 * 91.28348 * 222.21225 * 6 4 2 14 14 C 1.52527 * 113.84389 * 61.02203 * 4 2 1 15 15 C 1.53529 * 116.20192 * 255.24946 * 14 4 2 16 16 C 1.54509 * 104.04421 * 165.66864 * 15 14 4 17 17 H 1.09001 * 110.05489 * 97.13292 * 16 15 14 18 18 O 1.42895 * 110.01803 * 218.49819 * 16 15 14 19 19 C 1.53972 * 106.70024 * 337.80647 * 16 15 14 20 20 H 1.08999 * 110.01593 * 240.64586 * 19 16 15 21 21 N 1.46501 * 110.01491 * 119.31099 * 19 16 15 22 22 C 1.36941 * 119.99834 * 86.45541 * 21 19 16 23 23 H 1.07998 * 119.99996 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99831 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99902 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 120.00282 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47280 * 89.99666 * 26 24 22 28 28 H 1.48497 * 109.47322 * 210.00110 * 26 24 22 29 29 H 1.48503 * 109.46753 * 330.00062 * 26 24 22 30 30 C 1.53528 * 116.19889 * 18.81912 * 14 4 2 31 31 H 1.09001 * 109.47156 * 307.57444 * 1 2 3 32 32 H 1.09005 * 109.47641 * 67.58144 * 1 2 3 33 33 H 1.09004 * 109.47083 * 187.57705 * 1 2 3 34 34 H 1.08997 * 109.47132 * 240.00317 * 2 1 3 35 35 H 1.09003 * 109.46449 * 174.80926 * 3 2 1 36 36 H 1.08997 * 109.47232 * 294.81097 * 3 2 1 37 37 H 1.08994 * 109.46849 * 54.81713 * 3 2 1 38 38 H 1.08999 * 109.46965 * 299.99845 * 9 7 6 39 39 H 1.09006 * 109.46964 * 59.99340 * 9 7 6 40 40 H 1.09000 * 109.47066 * 299.99702 * 10 9 7 41 41 H 1.08997 * 109.47075 * 60.00078 * 10 9 7 42 42 H 1.09000 * 109.47205 * 299.99705 * 11 10 9 43 43 H 1.08997 * 109.47235 * 60.00265 * 11 10 9 44 44 H 1.09000 * 113.84457 * 269.42760 * 13 6 4 45 45 H 1.08997 * 113.84307 * 137.78660 * 13 6 4 46 46 H 1.09005 * 110.51614 * 47.02990 * 15 14 4 47 47 H 1.09005 * 110.51806 * 284.31367 * 15 14 4 48 48 H 0.96702 * 114.00672 * 178.72025 * 18 16 15 49 49 H 0.97002 * 120.00246 * 266.45894 * 21 19 16 50 50 H 0.97004 * 120.00102 * 179.97438 * 25 24 22 51 51 H 1.09006 * 110.51700 * 75.69105 * 30 14 4 52 52 H 1.09000 * 110.63347 * 313.03100 * 30 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.8744 -0.1567 2.1667 6 7 3.4131 -1.2525 1.1138 7 6 4.5595 -0.7779 0.5874 8 8 4.6114 0.3616 0.1754 9 6 5.7767 -1.6631 0.5105 10 6 6.9325 -0.8871 -0.1242 11 6 8.1683 -1.7857 -0.2016 12 9 9.2253 -1.0759 -0.7814 13 6 3.0282 -2.5114 1.7870 14 6 1.6084 -2.1816 1.3374 15 6 0.4895 -2.4983 2.3399 16 6 0.0255 -3.9188 1.9474 17 1 0.5108 -4.6596 2.5829 18 8 -1.3942 -4.0219 2.0734 19 6 0.4409 -4.1303 0.4800 20 1 -0.4406 -4.3121 -0.1349 21 7 1.3646 -5.2629 0.3786 22 6 0.8759 -6.5356 0.2501 23 1 -0.1905 -6.7045 0.2239 24 6 1.7512 -7.6088 0.1546 25 7 1.2814 -8.8321 0.0316 26 14 3.5957 -7.3169 0.2021 27 1 4.0700 -7.3752 1.6080 28 1 4.2832 -8.3635 -0.5962 29 1 3.9000 -5.9798 -0.3679 30 6 1.1447 -2.8317 0.0262 31 1 -0.3633 0.6267 0.8145 32 1 -0.3634 0.3919 -0.9500 33 1 -0.3633 -1.0187 0.1355 34 1 1.8933 -0.5138 -0.8900 35 1 3.1260 1.4439 0.0930 36 1 1.7545 1.9289 -0.9328 37 1 1.6028 1.9824 0.8399 38 1 6.0594 -1.9801 1.5144 39 1 5.5508 -2.5395 -0.0971 40 1 6.6496 -0.5705 -1.1281 41 1 7.1584 -0.0106 0.4831 42 1 8.4511 -2.1019 0.8025 43 1 7.9427 -2.6624 -0.8086 44 1 3.1636 -2.4920 2.8684 45 1 3.4419 -3.4051 1.3200 46 1 -0.3295 -1.7865 2.2359 47 1 0.8762 -2.4907 3.3590 48 1 -1.7498 -4.8853 1.8222 49 1 2.3224 -5.1113 0.4026 50 1 1.8930 -9.5820 -0.0356 51 1 1.9999 -3.0626 -0.6091 52 1 0.4449 -2.1813 -0.4986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105653058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:44 Heat of formation + Delta-G solvation = -121.923475 kcal Electronic energy + Delta-G solvation = -32346.225739 eV Core-core repulsion = 28067.204698 eV Total energy + Delta-G solvation = -4279.021041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.59412 -42.42783 -39.97825 -38.35380 -36.18880 -35.71704 -34.88178 -34.55192 -32.82108 -30.02464 -29.22253 -28.30252 -27.49986 -26.84274 -25.71565 -24.33277 -22.90976 -21.88131 -21.11969 -20.32609 -19.84890 -19.21674 -18.14731 -17.76588 -17.48896 -17.25902 -16.89586 -16.49772 -16.39233 -16.36089 -15.94349 -15.72037 -15.45363 -15.03120 -14.83284 -14.71587 -14.32910 -14.11827 -14.03344 -13.73625 -13.59562 -13.53126 -13.11324 -13.03598 -12.95251 -12.81181 -12.63254 -12.48023 -12.40322 -12.26715 -12.20011 -12.06638 -11.93270 -11.76951 -11.67897 -11.64341 -11.59440 -11.53689 -11.18642 -10.83040 -10.65940 -10.44960 -9.66289 -9.23990 -7.98572 -5.32130 1.37702 1.43632 1.51164 1.62586 1.76755 2.51834 3.11405 3.26947 3.32438 3.47733 3.58893 3.71356 3.73535 3.79210 3.83338 3.96090 4.01796 4.06058 4.07664 4.18814 4.29996 4.33992 4.43088 4.50931 4.55241 4.57008 4.62863 4.65524 4.68047 4.71951 4.78321 4.86481 4.89233 4.94999 4.95775 5.02647 5.04293 5.05138 5.11790 5.21458 5.22916 5.29201 5.36922 5.40644 5.54831 5.63244 5.81086 6.23695 6.71996 6.89565 7.11892 7.21980 7.87348 8.06464 9.22646 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007857 B = 0.004673 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.981178 B = 5990.135686 C = 8969.730932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.167 4.167 4 C 0.158 3.842 5 H 0.107 0.893 6 N -0.638 5.638 7 C 0.529 3.471 8 O -0.567 6.567 9 C -0.133 4.133 10 C -0.129 4.129 11 C 0.058 3.942 12 F -0.237 7.237 13 C 0.110 3.890 14 C -0.081 4.081 15 C -0.089 4.089 16 C 0.084 3.916 17 H 0.047 0.953 18 O -0.581 6.581 19 C 0.146 3.854 20 H 0.048 0.952 21 N -0.741 5.741 22 C -0.228 4.228 23 H 0.059 0.941 24 C -0.062 4.062 25 N -0.985 5.985 26 Si 0.946 3.054 27 H -0.272 1.272 28 H -0.305 1.305 29 H -0.246 1.246 30 C -0.105 4.105 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.384 0.616 49 H 0.365 0.635 50 H 0.255 0.745 51 H 0.060 0.940 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 18.001 5.246 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.223 4.223 4 C 0.056 3.944 5 H 0.124 0.876 6 N -0.372 5.372 7 C 0.320 3.680 8 O -0.448 6.448 9 C -0.172 4.172 10 C -0.168 4.168 11 C 0.003 3.997 12 F -0.219 7.219 13 C -0.012 4.012 14 C -0.082 4.082 15 C -0.127 4.127 16 C 0.022 3.978 17 H 0.066 0.934 18 O -0.387 6.387 19 C 0.037 3.963 20 H 0.066 0.934 21 N -0.385 5.385 22 C -0.359 4.359 23 H 0.077 0.923 24 C -0.254 4.254 25 N -0.635 5.635 26 Si 0.773 3.227 27 H -0.198 1.198 28 H -0.233 1.233 29 H -0.170 1.170 30 C -0.142 4.142 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.134 0.866 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.232 0.768 49 H 0.199 0.801 50 H 0.064 0.936 51 H 0.078 0.922 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.024 19.140 5.102 20.704 hybrid contribution 0.873 -1.215 -0.545 1.592 sum 6.897 17.926 4.557 19.740 Atomic orbital electron populations 1.22003 0.93265 1.02950 1.02582 1.21092 0.96674 0.96297 0.96502 1.22206 1.04077 0.95098 1.00957 1.22761 0.78423 0.94263 0.98952 0.87550 1.50345 1.09053 1.20082 1.57734 1.20722 0.83501 0.87291 0.76472 1.90526 1.83396 1.20216 1.50671 1.21545 0.91658 0.98861 1.05161 1.21790 0.93743 0.98996 1.02257 1.22196 0.83031 0.94044 1.00419 1.92730 1.60250 1.81673 1.87220 1.23324 0.91635 0.86907 0.99288 1.22210 0.94505 0.94895 0.96629 1.22072 0.97188 0.94790 0.98698 1.23371 0.80603 0.97382 0.96426 0.93445 1.86320 1.21921 1.39873 1.90611 1.21788 0.92889 0.86645 0.94959 0.93422 1.42788 1.04309 1.02275 1.89121 1.19025 0.92854 0.83630 1.40421 0.92305 1.25466 1.02448 0.94763 1.02712 1.69885 1.35366 0.99012 1.59245 0.85542 0.81022 0.77987 0.78112 1.19803 1.23273 1.17003 1.22421 1.00497 0.95474 0.95846 0.91428 0.92261 0.91232 0.92643 0.90387 0.93624 0.92651 0.86203 0.87625 0.91867 0.91080 0.88298 0.89217 0.86650 0.89991 0.89166 0.89161 0.76751 0.80057 0.93572 0.92165 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.54 71.98 0.61 -2.08 16 2 C -0.09 -1.80 2.00 -10.79 -0.02 -1.83 16 3 C -0.17 -3.72 9.10 71.98 0.66 -3.06 16 4 C 0.16 3.06 3.30 44.58 0.15 3.21 16 5 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 6 N -0.64 -13.04 3.50 -836.31 -2.92 -15.97 16 7 C 0.53 12.06 7.92 87.66 0.69 12.76 16 8 O -0.57 -16.49 13.06 -3.03 -0.04 -16.53 16 9 C -0.13 -2.17 5.45 29.85 0.16 -2.00 16 10 C -0.13 -2.30 4.96 30.59 0.15 -2.15 16 11 C 0.06 0.85 7.55 71.98 0.54 1.39 16 12 F -0.24 -5.14 17.36 44.97 0.78 -4.36 16 13 C 0.11 2.03 7.90 85.97 0.68 2.71 16 14 C -0.08 -1.64 0.41 -52.06 -0.02 -1.66 16 15 C -0.09 -1.85 5.76 31.28 0.18 -1.67 16 16 C 0.08 2.39 4.07 31.44 0.13 2.52 16 17 H 0.05 1.56 7.92 -2.39 -0.02 1.54 16 18 O -0.58 -17.17 13.22 -148.98 -1.97 -19.14 16 19 C 0.15 4.67 3.36 45.84 0.15 4.83 16 20 H 0.05 1.71 7.91 -2.39 -0.02 1.69 16 21 N -0.74 -29.54 4.79 -318.95 -1.53 -31.07 16 22 C -0.23 -11.70 10.44 84.03 0.88 -10.82 16 23 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 24 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 25 N -0.98 -59.90 13.97 21.65 0.30 -59.60 16 26 Si 0.95 41.04 27.74 68.60 1.90 42.94 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.31 -13.98 7.11 99.48 0.71 -13.28 16 29 H -0.25 -9.20 6.52 99.48 0.65 -8.55 16 30 C -0.10 -2.65 4.55 31.29 0.14 -2.50 16 31 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.32 4.42 -2.38 -0.01 1.31 16 34 H 0.06 1.37 7.52 -2.39 -0.02 1.35 16 35 H 0.08 2.15 4.39 -2.39 -0.01 2.14 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.12 1.59 8.04 -2.39 -0.02 1.58 16 45 H 0.08 1.63 7.51 -2.39 -0.02 1.62 16 46 H 0.09 1.79 7.50 -2.38 -0.02 1.77 16 47 H 0.09 1.55 7.99 -2.38 -0.02 1.53 16 48 H 0.38 10.68 9.10 -74.06 -0.67 10.00 16 49 H 0.37 13.76 4.99 -92.71 -0.46 13.30 16 50 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 51 H 0.06 1.67 7.88 -2.38 -0.02 1.65 16 52 H 0.10 2.33 4.65 -2.39 -0.01 2.31 16 Total: -1.00 -68.37 400.80 1.82 -66.56 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.26 Total: 40.47 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.55 Total: -3.30 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -4.15 Total: -106.64 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -2.01 Total: -35.67 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.78 Total: -4.36 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.90 Total: 42.94 kcal Total: -68.37 1.82 -66.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105653058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.368 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds