Wall clock time and date at job start Wed Apr 1 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46965 * 2 1 4 4 C 1.53000 * 109.47105 * 119.99791 * 2 1 3 5 5 H 1.08994 * 113.07826 * 44.70245 * 4 2 1 6 6 N 1.47743 * 113.81328 * 272.80653 * 4 2 1 7 7 C 1.34783 * 134.41579 * 89.76192 * 6 4 2 8 8 O 1.21287 * 119.99476 * 0.02769 * 7 6 4 9 9 C 1.50690 * 120.00222 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.47244 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47376 * 179.97438 * 10 9 7 12 12 F 1.39896 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.47746 * 91.17323 * 269.78243 * 6 4 2 14 14 C 1.53083 * 85.84445 * 335.98708 * 13 6 4 15 15 C 1.53481 * 115.25715 * 139.79547 * 14 13 6 16 16 C 1.55079 * 103.95984 * 153.41406 * 15 14 13 17 17 H 1.08998 * 110.72976 * 81.13822 * 16 15 14 18 18 O 1.42901 * 110.73248 * 204.44728 * 16 15 14 19 19 C 1.54962 * 102.87464 * 322.78851 * 16 15 14 20 20 H 1.08995 * 110.59510 * 278.76063 * 19 16 15 21 21 N 1.46498 * 110.47693 * 156.18807 * 19 16 15 22 22 C 1.36936 * 120.00138 * 90.19158 * 21 19 16 23 23 H 1.08002 * 119.99833 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00238 * 179.72326 * 22 21 19 25 25 N 1.31612 * 120.00231 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 120.00066 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46960 * 359.97438 * 26 24 22 28 28 H 1.48490 * 109.47018 * 119.99731 * 26 24 22 29 29 H 1.48501 * 109.46909 * 240.00153 * 26 24 22 30 30 C 1.53081 * 115.49718 * 266.18487 * 14 13 6 31 31 H 1.09001 * 109.47047 * 300.00119 * 1 2 3 32 32 H 1.08998 * 109.47341 * 59.99927 * 1 2 3 33 33 H 1.08995 * 109.47389 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47042 * 240.00550 * 2 1 3 35 35 H 1.08992 * 109.47119 * 188.13935 * 3 2 1 36 36 H 1.08999 * 109.46848 * 308.14479 * 3 2 1 37 37 H 1.08999 * 109.47083 * 68.14104 * 3 2 1 38 38 H 1.09001 * 109.47283 * 299.99737 * 9 7 6 39 39 H 1.09004 * 109.47247 * 60.00168 * 9 7 6 40 40 H 1.08994 * 109.47042 * 299.99824 * 10 9 7 41 41 H 1.09004 * 109.46916 * 59.99898 * 10 9 7 42 42 H 1.08994 * 109.46978 * 299.99969 * 11 10 9 43 43 H 1.09002 * 109.46965 * 59.99582 * 11 10 9 44 44 H 1.08996 * 113.81553 * 221.76168 * 13 6 4 45 45 H 1.08995 * 113.92092 * 90.22975 * 13 6 4 46 46 H 1.08996 * 110.53041 * 272.03874 * 15 14 13 47 47 H 1.09006 * 110.52540 * 34.79147 * 15 14 13 48 48 H 0.96697 * 113.99840 * 174.91068 * 18 16 15 49 49 H 0.96998 * 120.00152 * 270.18673 * 21 19 16 50 50 H 0.96998 * 120.00516 * 179.97438 * 25 24 22 51 51 H 1.08996 * 110.10372 * 110.83104 * 30 14 13 52 52 H 1.09005 * 110.14949 * 349.24569 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5104 -1.6522 1.4512 6 7 2.1764 0.1558 2.4304 7 6 1.3557 0.5177 3.4364 8 8 0.2241 0.0836 3.4817 9 6 1.8440 1.4616 4.5047 10 6 0.7253 1.7062 5.5194 11 6 1.2213 2.6641 6.6045 12 9 0.1981 2.8881 7.5319 13 6 3.5720 0.4779 2.0679 14 6 3.5642 -0.8515 1.3088 15 6 4.2760 -0.8334 -0.0509 16 6 4.7247 -2.3034 -0.2578 17 1 3.8994 -2.9098 -0.6309 18 8 5.8444 -2.3706 -1.1431 19 6 5.1282 -2.7457 1.1715 20 1 6.1349 -2.4021 1.4093 21 7 5.0411 -4.2023 1.3009 22 6 6.1305 -4.9815 1.0160 23 1 7.0539 -4.5221 0.6954 24 6 6.0497 -6.3612 1.1442 25 7 4.9261 -6.9207 1.5401 26 14 7.5361 -7.4241 0.7561 27 1 8.6671 -6.5586 0.3354 28 1 7.9240 -8.1932 1.9656 29 1 7.1986 -8.3651 -0.3420 30 6 4.0919 -2.0586 2.0884 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 3.1201 1.4461 -0.1455 36 1 1.5626 1.9967 -0.8082 37 1 1.8003 1.9127 0.9538 38 1 2.7040 1.0235 5.0113 39 1 2.1344 2.4080 4.0484 40 1 -0.1349 2.1441 5.0132 41 1 0.4353 0.7597 5.9757 42 1 2.0813 2.2257 7.1106 43 1 1.5116 3.6106 6.1485 44 1 4.2546 0.4954 2.9175 45 1 3.6709 1.3517 1.4240 46 1 3.5871 -0.5294 -0.8389 47 1 5.1406 -0.1703 -0.0209 48 1 6.2125 -3.2589 -1.2449 49 1 4.2117 -4.6149 1.5886 50 1 4.8694 -7.8849 1.6293 51 1 3.2759 -2.7457 2.3124 52 1 4.5685 -1.7299 3.0120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105653060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:51 Heat of formation + Delta-G solvation = -104.461036 kcal Electronic energy + Delta-G solvation = -31697.184220 eV Core-core repulsion = 27418.920407 eV Total energy + Delta-G solvation = -4278.263813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.87781 -41.60399 -38.85952 -37.20488 -34.59424 -34.25645 -34.01641 -33.14146 -30.78592 -28.86147 -28.14045 -27.36604 -26.75783 -26.00759 -24.22081 -22.91687 -22.16128 -20.87560 -19.90191 -19.30024 -18.12162 -17.43452 -17.16975 -16.86213 -16.57652 -16.24837 -16.10626 -15.57430 -15.41271 -14.86172 -14.81897 -14.63750 -14.16616 -13.84787 -13.55320 -13.34369 -13.24334 -13.18862 -13.03342 -12.75717 -12.31295 -12.14284 -11.92089 -11.85657 -11.83265 -11.74578 -11.65240 -11.34016 -11.31623 -11.00560 -10.97401 -10.94064 -10.83313 -10.74189 -10.61475 -10.44333 -10.13240 -10.09076 -9.74280 -9.73570 -9.58644 -8.84267 -8.66595 -7.04635 -5.87981 -3.18160 2.54229 2.67587 3.36415 3.42645 3.44840 4.01915 4.17050 4.40666 4.40919 4.45165 4.54737 4.61083 4.68079 4.74591 4.77016 4.87411 4.91526 4.99705 5.14284 5.16267 5.21145 5.28276 5.31415 5.37838 5.42633 5.51469 5.59832 5.63723 5.65071 5.71273 5.73955 5.75666 5.81529 5.86530 5.91853 5.92771 5.94944 6.03116 6.12020 6.15248 6.21953 6.27962 6.38429 6.46788 6.56501 6.85074 7.59379 7.66391 8.09224 8.30006 8.30382 9.41499 9.98321 10.32246 11.34065 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.002781 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.127083 B =10067.601920 C =11331.090744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.151 4.151 4 C 0.152 3.848 5 H 0.093 0.907 6 N -0.631 5.631 7 C 0.534 3.466 8 O -0.541 6.541 9 C -0.134 4.134 10 C -0.138 4.138 11 C 0.062 3.938 12 F -0.219 7.219 13 C 0.099 3.901 14 C -0.084 4.084 15 C -0.107 4.107 16 C 0.079 3.921 17 H 0.058 0.942 18 O -0.574 6.574 19 C 0.148 3.852 20 H 0.063 0.937 21 N -0.721 5.721 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 C -0.103 4.103 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.386 0.614 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.072 0.928 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 21.278 1.472 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.208 4.208 4 C 0.049 3.951 5 H 0.111 0.889 6 N -0.366 5.366 7 C 0.324 3.676 8 O -0.418 6.418 9 C -0.174 4.174 10 C -0.176 4.176 11 C 0.007 3.993 12 F -0.200 7.200 13 C -0.023 4.023 14 C -0.085 4.085 15 C -0.146 4.146 16 C 0.017 3.983 17 H 0.076 0.924 18 O -0.382 6.382 19 C 0.036 3.964 20 H 0.081 0.919 21 N -0.361 5.361 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.142 4.142 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.235 0.765 49 H 0.218 0.782 50 H 0.066 0.934 51 H 0.091 0.909 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.475 21.646 1.650 22.388 hybrid contribution 0.578 -1.429 0.066 1.543 sum -4.897 20.217 1.716 20.872 Atomic orbital electron populations 1.21795 0.94517 1.02163 1.01707 1.21344 0.96380 0.96645 0.97436 1.22104 1.01210 0.95779 1.01692 1.22767 0.95257 0.92908 0.84177 0.88925 1.50148 1.14337 1.48136 1.23935 1.20182 0.84413 0.81182 0.81868 1.90721 1.18778 1.55706 1.76575 1.21487 1.00105 0.99888 0.95926 1.21911 0.98721 1.01177 0.95837 1.21999 0.88199 1.00372 0.88718 1.92772 1.62733 1.96175 1.68286 1.23698 0.81970 0.98188 0.98489 1.22303 0.94288 0.95425 0.96506 1.22265 0.99839 0.97533 0.94923 1.23663 0.88321 0.94301 0.92046 0.92420 1.86212 1.48779 1.35808 1.67355 1.21807 0.96781 0.85768 0.92005 0.91891 1.42498 1.13831 0.99110 1.80668 1.19289 0.91725 0.88419 1.38603 0.90886 1.24777 0.97150 0.96803 1.01849 1.69665 1.25071 1.10123 1.52705 0.86144 0.82003 0.80637 0.77540 1.20407 1.21849 1.21805 1.22094 0.99496 0.94664 0.97912 0.92383 0.92816 0.92485 0.88997 0.91644 0.92817 0.92599 0.88594 0.88859 0.90058 0.89847 0.90646 0.90814 0.90071 0.88441 0.90594 0.90397 0.76533 0.78152 0.93394 0.90945 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 2 C -0.10 -1.01 2.39 -90.62 -0.22 -1.23 16 3 C -0.15 -1.29 7.35 37.16 0.27 -1.02 16 4 C 0.15 1.80 3.85 -67.20 -0.26 1.54 16 5 H 0.09 1.31 7.85 -51.93 -0.41 0.90 16 6 N -0.63 -6.94 2.40 -174.92 -0.42 -7.36 16 7 C 0.53 6.45 8.06 -10.99 -0.09 6.36 16 8 O -0.54 -8.71 16.59 5.55 0.09 -8.62 16 9 C -0.13 -1.06 5.45 -27.89 -0.15 -1.22 16 10 C -0.14 -1.20 4.96 -26.73 -0.13 -1.34 16 11 C 0.06 0.43 7.55 37.16 0.28 0.71 16 12 F -0.22 -2.26 17.36 2.25 0.04 -2.23 16 13 C 0.10 0.88 6.93 -3.32 -0.02 0.86 16 14 C -0.08 -0.97 1.05 -154.26 -0.16 -1.13 16 15 C -0.11 -1.31 4.79 -25.38 -0.12 -1.43 16 16 C 0.08 1.29 3.96 -24.60 -0.10 1.19 16 17 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 18 O -0.57 -9.99 13.45 -35.23 -0.47 -10.46 16 19 C 0.15 2.65 3.25 -66.11 -0.22 2.43 16 20 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 21 N -0.72 -16.62 5.21 -51.67 -0.27 -16.89 16 22 C -0.25 -6.40 9.71 -15.06 -0.15 -6.54 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 26 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C -0.10 -1.52 6.05 -25.90 -0.16 -1.68 16 31 H 0.06 0.73 8.02 -51.93 -0.42 0.31 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.93 6.38 -51.93 -0.33 0.60 16 35 H 0.06 0.51 5.11 -51.93 -0.27 0.24 16 36 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 37 H 0.06 0.50 6.66 -51.93 -0.35 0.16 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 45 H 0.10 0.71 5.02 -51.93 -0.26 0.45 16 46 H 0.08 0.84 4.87 -51.93 -0.25 0.59 16 47 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 48 H 0.39 6.68 8.86 45.56 0.40 7.08 16 49 H 0.38 9.64 7.57 -40.82 -0.31 9.33 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.07 1.20 7.33 -51.93 -0.38 0.82 16 52 H 0.07 0.94 7.74 -51.93 -0.40 0.53 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -31.46 405.88 -8.17 -39.63 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.99 Total: 13.71 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.97 Total: -4.05 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.04 Total: -50.46 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.38 Total: -19.08 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.46 -8.17 -39.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105653060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.829 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds