Wall clock time and date at job start Wed Apr 1 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46839 * 2 1 4 4 C 1.53001 * 109.46931 * 119.99635 * 2 1 3 5 5 H 1.08997 * 113.10750 * 310.94625 * 4 2 1 6 6 N 1.47858 * 113.84427 * 82.94427 * 4 2 1 7 7 C 1.34774 * 134.35656 * 317.81017 * 6 4 2 8 8 O 1.21279 * 120.00135 * 354.37623 * 7 6 4 9 9 C 1.50707 * 119.99948 * 174.38070 * 7 6 4 10 10 C 1.53002 * 109.47164 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46923 * 179.97438 * 10 9 7 12 12 F 1.39896 * 109.46820 * 179.97438 * 11 10 9 13 13 C 1.47851 * 91.28058 * 137.78330 * 6 4 2 14 14 C 1.52532 * 113.84252 * 178.95348 * 4 2 1 15 15 C 1.53529 * 116.20049 * 104.75138 * 14 4 2 16 16 C 1.54516 * 104.04038 * 194.32983 * 15 14 4 17 17 H 1.08993 * 110.01609 * 141.50471 * 16 15 14 18 18 O 1.42901 * 110.04904 * 262.86400 * 16 15 14 19 19 C 1.53970 * 106.69952 * 22.19078 * 16 15 14 20 20 H 1.09000 * 110.01129 * 240.64722 * 19 16 15 21 21 N 1.46502 * 110.01111 * 119.31500 * 19 16 15 22 22 C 1.36942 * 119.99912 * 86.45258 * 21 19 16 23 23 H 1.07999 * 120.00068 * 0.02562 * 22 21 19 24 24 C 1.38811 * 119.99503 * 179.97438 * 22 21 19 25 25 N 1.31611 * 120.00432 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99483 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47014 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.47315 * 60.00244 * 26 24 22 29 29 H 1.48503 * 109.47464 * 300.00080 * 26 24 22 30 30 C 1.53526 * 116.19941 * 341.18081 * 14 4 2 31 31 H 1.09001 * 109.47576 * 305.19376 * 1 2 3 32 32 H 1.09000 * 109.46743 * 65.19480 * 1 2 3 33 33 H 1.09004 * 109.47201 * 185.19110 * 1 2 3 34 34 H 1.08994 * 109.47424 * 240.00255 * 2 1 3 35 35 H 1.09001 * 109.47421 * 292.40237 * 3 2 1 36 36 H 1.09003 * 109.47295 * 52.40466 * 3 2 1 37 37 H 1.09005 * 109.47215 * 172.39818 * 3 2 1 38 38 H 1.09000 * 109.46545 * 299.99656 * 9 7 6 39 39 H 1.09000 * 109.47024 * 59.99599 * 9 7 6 40 40 H 1.09003 * 109.46800 * 299.99999 * 10 9 7 41 41 H 1.08994 * 109.47013 * 60.00059 * 10 9 7 42 42 H 1.09000 * 109.46683 * 299.99674 * 11 10 9 43 43 H 1.09000 * 109.47126 * 59.99765 * 11 10 9 44 44 H 1.08998 * 113.84793 * 222.21421 * 13 6 4 45 45 H 1.09007 * 113.95823 * 90.59338 * 13 6 4 46 46 H 1.09004 * 110.51586 * 75.69294 * 15 14 4 47 47 H 1.08999 * 110.51741 * 312.96609 * 15 14 4 48 48 H 0.96704 * 113.99912 * 178.74426 * 18 16 15 49 49 H 0.96991 * 120.00052 * 266.45350 * 21 19 16 50 50 H 0.97005 * 120.00056 * 0.02562 * 25 24 22 51 51 H 1.09001 * 110.51335 * 47.03482 * 30 14 4 52 52 H 1.08997 * 110.52032 * 284.31390 * 30 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5631 -0.3765 2.1668 6 7 2.0825 -2.1930 1.1143 7 6 1.2530 -3.1152 0.5872 8 8 0.1616 -2.7841 0.1749 9 6 1.6817 -4.5580 0.5104 10 6 0.5645 -5.3889 -0.1240 11 6 1.0000 -6.8535 -0.2026 12 9 -0.0218 -7.6133 -0.7821 13 6 3.3978 -2.2498 1.7873 14 6 3.5606 -0.8014 1.3374 15 6 4.2326 0.1479 2.3395 16 6 5.7265 0.1112 1.9468 17 1 6.1620 1.1058 2.0426 18 8 6.4297 -0.8124 2.7801 19 6 5.7870 -0.3514 0.4795 20 1 6.3527 -1.2801 0.4042 21 7 6.4117 0.6841 -0.3474 22 6 7.7742 0.7265 -0.4781 23 1 8.3882 -0.0037 0.0281 24 6 8.3660 1.7074 -1.2620 25 7 7.6177 2.5969 -1.8792 26 14 10.2246 1.7656 -1.4397 27 1 10.6022 2.8986 -2.3223 28 1 10.7052 0.4926 -2.0345 29 1 10.8442 1.9523 -0.1030 30 6 4.3280 -0.5816 0.0260 31 1 -0.3634 0.5923 0.8398 32 1 -0.3633 0.4312 -0.9329 33 1 -0.3634 -1.0235 0.0930 34 1 1.8933 -0.5138 -0.8899 35 1 1.7918 1.9157 -0.9501 36 1 1.5699 1.9941 0.8143 37 1 3.1214 1.4456 0.1360 38 1 2.5834 -4.6372 -0.0968 39 1 1.8858 -4.9304 1.5143 40 1 -0.3370 -5.3095 0.4836 41 1 0.3601 -5.0166 -1.1278 42 1 1.9013 -6.9324 -0.8104 43 1 1.2048 -7.2260 0.8011 44 1 4.1023 -2.9381 1.3203 45 1 3.3368 -2.3711 2.8688 46 1 4.0966 -0.2140 3.3587 47 1 3.8349 1.1573 2.2353 48 1 7.3700 -0.8948 2.5699 49 1 5.8603 1.3397 -0.8022 50 1 6.6526 2.5674 -1.7860 51 1 3.9475 0.2959 -0.4968 52 1 4.2602 -1.4649 -0.6091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105653061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:53 Heat of formation + Delta-G solvation = -125.448287 kcal Electronic energy + Delta-G solvation = -31950.040071 eV Core-core repulsion = 27670.866183 eV Total energy + Delta-G solvation = -4279.173888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.57133 -42.42457 -39.98317 -38.37824 -36.36661 -35.75502 -34.87037 -34.65750 -32.31328 -29.80479 -29.14263 -28.20772 -27.51213 -26.83287 -25.68182 -24.74208 -22.90924 -21.81006 -21.24183 -20.34790 -19.53742 -19.09572 -18.23899 -18.07222 -17.46733 -17.21124 -17.07155 -16.51477 -16.35252 -16.10000 -15.76490 -15.64193 -15.53770 -15.29002 -15.21602 -14.72341 -14.29588 -14.10150 -13.85998 -13.72354 -13.55322 -13.35071 -13.06819 -12.95264 -12.93014 -12.69853 -12.66199 -12.44625 -12.39781 -12.21607 -12.13188 -12.01262 -11.96092 -11.86746 -11.69323 -11.58616 -11.56745 -11.23828 -11.07175 -10.90691 -10.67425 -10.42673 -9.66403 -9.06858 -8.35346 -5.30531 1.60289 1.64065 1.69059 1.77324 1.84733 2.72139 3.18121 3.31619 3.32370 3.40877 3.59321 3.73608 3.79773 3.80808 3.86033 3.94599 3.97593 4.05759 4.10326 4.21530 4.30175 4.37104 4.38439 4.46023 4.50301 4.51302 4.57604 4.64615 4.66855 4.72299 4.74383 4.75345 4.88704 4.93670 4.95749 4.97742 4.99085 5.01319 5.14599 5.18024 5.22521 5.24485 5.27782 5.35415 5.46684 5.56806 5.62503 6.52159 6.74779 6.85895 7.12055 7.22635 8.01361 8.13484 9.16224 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.002867 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.409296 B = 9765.074623 C =10521.121028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.084 4.084 3 C -0.152 4.152 4 C 0.154 3.846 5 H 0.105 0.895 6 N -0.639 5.639 7 C 0.525 3.475 8 O -0.572 6.572 9 C -0.126 4.126 10 C -0.133 4.133 11 C 0.060 3.940 12 F -0.239 7.239 13 C 0.126 3.874 14 C -0.079 4.079 15 C -0.091 4.091 16 C 0.087 3.913 17 H 0.031 0.969 18 O -0.572 6.572 19 C 0.151 3.849 20 H 0.050 0.950 21 N -0.743 5.743 22 C -0.327 4.327 23 H 0.071 0.929 24 C -0.104 4.104 25 N -0.977 5.977 26 Si 1.123 2.877 27 H -0.299 1.299 28 H -0.279 1.279 29 H -0.276 1.276 30 C -0.101 4.101 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.384 0.616 49 H 0.359 0.641 50 H 0.245 0.755 51 H 0.077 0.923 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 -14.261 10.792 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.103 4.103 3 C -0.209 4.209 4 C 0.052 3.948 5 H 0.123 0.877 6 N -0.373 5.373 7 C 0.317 3.683 8 O -0.453 6.453 9 C -0.165 4.165 10 C -0.171 4.171 11 C 0.005 3.995 12 F -0.221 7.221 13 C 0.005 3.995 14 C -0.081 4.081 15 C -0.129 4.129 16 C 0.025 3.975 17 H 0.049 0.951 18 O -0.378 6.378 19 C 0.042 3.958 20 H 0.068 0.932 21 N -0.385 5.385 22 C -0.459 4.459 23 H 0.089 0.911 24 C -0.295 4.295 25 N -0.625 5.625 26 Si 0.949 3.051 27 H -0.226 1.226 28 H -0.205 1.205 29 H -0.202 1.202 30 C -0.139 4.139 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.130 0.870 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.232 0.768 49 H 0.191 0.809 50 H 0.055 0.945 51 H 0.095 0.905 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.845 -13.719 10.153 20.222 hybrid contribution -0.968 -0.039 -0.224 0.994 sum -11.813 -13.758 9.929 20.674 Atomic orbital electron populations 1.22211 0.94675 1.04481 1.00889 1.21046 0.96378 0.96163 0.96726 1.22002 1.01553 0.94987 1.02375 1.22739 0.93929 0.79683 0.98454 0.87740 1.50382 1.21709 1.07417 1.57778 1.20909 0.82925 0.88120 0.76381 1.90527 1.22689 1.81333 1.50781 1.21505 1.00326 0.89362 1.05322 1.21818 0.98861 0.94333 1.02090 1.22198 0.88113 0.88647 1.00534 1.92729 1.63977 1.78095 1.87269 1.23184 0.81925 0.95373 0.99035 1.22170 0.93495 0.96420 0.95984 1.22074 0.91639 0.99753 0.99466 1.23234 0.92874 0.90990 0.90380 0.95069 1.86304 1.26556 1.64922 1.60018 1.21776 0.92803 0.90968 0.90255 0.93163 1.42721 1.03704 1.34328 1.57793 1.20357 0.84685 1.13368 1.27474 0.91101 1.27051 1.10260 0.94835 0.97378 1.70993 1.05318 1.38712 1.47506 0.82676 0.70117 0.75844 0.76496 1.22551 1.20498 1.20239 1.22320 0.93654 1.01933 0.96005 0.92600 0.93866 0.89951 0.92994 0.92841 0.91223 0.92037 0.87000 0.85904 0.91433 0.92204 0.88838 0.88133 0.88658 0.87002 0.88854 0.89838 0.76784 0.80903 0.94487 0.90460 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 9.10 71.98 0.66 -3.55 16 2 C -0.08 -2.07 2.00 -10.79 -0.02 -2.09 16 3 C -0.15 -3.66 8.54 71.98 0.61 -3.04 16 4 C 0.15 3.32 3.30 44.58 0.15 3.47 16 5 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 6 N -0.64 -13.01 3.50 -836.18 -2.92 -15.93 16 7 C 0.52 11.67 7.92 87.66 0.69 12.36 16 8 O -0.57 -16.92 13.06 -3.02 -0.04 -16.96 16 9 C -0.13 -1.72 5.45 29.85 0.16 -1.56 16 10 C -0.13 -2.13 4.96 30.60 0.15 -1.98 16 11 C 0.06 0.72 7.55 71.98 0.54 1.26 16 12 F -0.24 -4.75 17.36 44.97 0.78 -3.97 16 13 C 0.13 2.14 7.90 85.97 0.68 2.82 16 14 C -0.08 -1.73 0.41 -52.06 -0.02 -1.75 16 15 C -0.09 -2.11 5.77 31.29 0.18 -1.93 16 16 C 0.09 2.66 4.06 31.44 0.13 2.78 16 17 H 0.03 1.17 7.92 -2.39 -0.02 1.15 16 18 O -0.57 -15.85 13.22 -148.98 -1.97 -17.82 16 19 C 0.15 5.21 3.36 45.83 0.15 5.37 16 20 H 0.05 1.81 7.91 -2.39 -0.02 1.79 16 21 N -0.74 -34.09 5.04 -318.95 -1.61 -35.69 16 22 C -0.33 -16.97 9.96 84.03 0.84 -16.13 16 23 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 24 C -0.10 -5.73 5.50 84.86 0.47 -5.27 16 25 N -0.98 -59.14 13.70 21.65 0.30 -58.84 16 26 Si 1.12 49.68 29.92 68.60 2.05 51.73 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 29 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 30 C -0.10 -2.90 4.64 31.28 0.15 -2.75 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 2.44 4.39 -2.38 -0.01 2.43 16 34 H 0.05 1.50 7.52 -2.39 -0.02 1.49 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 37 H 0.06 1.64 4.42 -2.38 -0.01 1.63 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 41 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 1.48 8.12 -2.39 -0.02 1.46 16 45 H 0.11 1.48 8.04 -2.38 -0.02 1.46 16 46 H 0.09 1.86 7.91 -2.39 -0.02 1.84 16 47 H 0.08 1.92 7.57 -2.39 -0.02 1.90 16 48 H 0.38 9.62 9.10 -74.05 -0.67 8.95 16 49 H 0.36 17.58 6.36 -92.71 -0.59 16.99 16 50 H 0.24 14.71 6.78 -92.70 -0.63 14.08 16 51 H 0.08 2.43 4.22 -2.39 -0.01 2.42 16 52 H 0.06 1.76 8.07 -2.39 -0.02 1.74 16 Total: -1.00 -69.82 403.11 1.92 -67.90 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.19 Total: 41.56 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.52 Total: -11.98 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.23 Total: -110.47 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -2.01 Total: -34.78 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.78 Total: -3.97 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.73 kcal Total: -69.82 1.92 -67.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105653061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.545 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds