Wall clock time and date at job start Wed Apr 1 2020 02:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.53000 * 109.47596 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46574 * 304.99851 * 4 3 2 6 6 N 1.46501 * 109.46878 * 64.99629 * 4 3 2 7 7 C 1.34776 * 120.00046 * 60.00438 * 6 4 3 8 8 N 1.34773 * 119.99494 * 179.97438 * 7 6 4 9 9 O 1.21580 * 120.00150 * 359.97438 * 7 6 4 10 10 C 1.50697 * 109.47453 * 184.99875 * 4 3 2 11 11 O 1.21277 * 119.99825 * 259.99972 * 10 4 3 12 12 N 1.34773 * 119.99966 * 79.72744 * 10 4 3 13 13 C 1.46501 * 119.99824 * 180.27746 * 12 10 4 14 14 C 1.53001 * 109.47261 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.50959 * 304.99951 * 14 13 12 16 16 C 1.53296 * 109.51456 * 184.89790 * 14 13 12 17 17 N 1.47152 * 108.38405 * 187.77424 * 16 14 13 18 18 C 1.36934 * 120.98069 * 230.51160 * 17 16 14 19 19 H 1.08000 * 119.99807 * 153.74214 * 18 17 16 20 20 C 1.38814 * 119.99968 * 333.74206 * 18 17 16 21 21 N 1.31617 * 119.99990 * 160.03765 * 20 18 17 22 22 Si 1.86797 * 120.00016 * 340.04364 * 20 18 17 23 23 H 1.48499 * 109.47160 * 91.88730 * 22 20 18 24 24 H 1.48500 * 109.46988 * 211.88930 * 22 20 18 25 25 H 1.48501 * 109.46785 * 331.88316 * 22 20 18 26 26 C 1.47154 * 118.03708 * 50.53129 * 17 16 14 27 27 C 1.53293 * 108.38443 * 309.46519 * 26 17 16 28 28 O 1.42962 * 109.26563 * 52.28030 * 27 26 17 29 29 H 1.09001 * 109.47264 * 300.00009 * 1 2 3 30 30 H 1.08994 * 109.47441 * 60.00193 * 1 2 3 31 31 H 1.09004 * 109.46813 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47179 * 239.99503 * 2 1 3 33 33 H 1.09001 * 109.47012 * 119.99326 * 2 1 3 34 34 H 1.08997 * 109.47523 * 59.99714 * 3 2 1 35 35 H 1.09001 * 109.47039 * 299.99922 * 3 2 1 36 36 H 0.97009 * 119.99753 * 240.00345 * 6 4 3 37 37 H 0.97000 * 120.00956 * 0.02562 * 8 7 6 38 38 H 0.97006 * 119.99868 * 179.97438 * 8 7 6 39 39 H 0.97002 * 120.00106 * 0.27127 * 12 10 4 40 40 H 1.09006 * 109.46947 * 299.99289 * 13 12 10 41 41 H 1.08997 * 109.47134 * 59.99502 * 13 12 10 42 42 H 1.08997 * 109.47049 * 59.99791 * 15 14 13 43 43 H 1.09003 * 109.46784 * 179.97438 * 15 14 13 44 44 H 1.09005 * 109.46800 * 299.99879 * 15 14 13 45 45 H 1.09002 * 109.67985 * 307.49330 * 16 14 13 46 46 H 1.08999 * 109.68101 * 68.01193 * 16 14 13 47 47 H 0.96998 * 120.00192 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.67969 * 69.18946 * 26 17 16 49 49 H 1.08997 * 109.68247 * 189.74635 * 26 17 16 50 50 H 1.09005 * 109.51430 * 172.22398 * 27 26 17 51 51 H 1.08999 * 109.51637 * 292.32396 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 7 4.0578 0.8590 -1.2527 7 6 3.7317 1.4245 -2.4319 8 7 4.1809 0.8879 -3.5836 9 8 3.0323 2.4187 -2.4565 10 6 4.0723 2.8580 0.1232 11 8 4.4459 3.4572 -0.8628 12 7 4.1012 3.4598 1.3287 13 6 4.5838 4.8378 1.4481 14 6 4.5126 5.2782 2.9117 15 6 3.0880 5.0838 3.4350 16 6 4.9008 6.7571 3.0209 17 7 5.0067 7.1051 4.4468 18 6 4.3623 8.2015 4.9545 19 1 4.0834 8.2290 5.9975 20 6 4.0676 9.2776 4.1286 21 7 3.1338 10.1376 4.4762 22 14 4.9960 9.5050 2.5238 23 1 4.2585 8.8307 1.4253 24 1 5.1164 10.9541 2.2226 25 1 6.3514 8.9109 2.6477 26 6 5.8258 6.2402 5.3108 27 6 5.3924 4.7865 5.0900 28 8 5.4188 4.4938 3.6910 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 4.6155 0.0655 -1.2331 37 1 4.7386 0.0945 -3.5641 38 1 3.9459 1.2946 -4.4323 39 1 3.8023 2.9805 2.1173 40 1 5.6159 4.8926 1.1017 41 1 3.9613 5.4947 0.8407 42 1 2.8134 4.0317 3.3587 43 1 3.0382 5.3972 4.4778 44 1 2.3979 5.6835 2.8415 45 1 5.8603 6.9219 2.5306 46 1 4.1362 7.3733 2.5479 47 1 2.9281 10.8897 3.8993 48 1 6.8783 6.3530 5.0511 49 1 5.6733 6.5142 6.3548 50 1 6.0762 4.1190 5.6146 51 1 4.3814 4.6458 5.4725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108367328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:58 Heat of formation + Delta-G solvation = -82.458283 kcal Electronic energy + Delta-G solvation = -32113.899932 eV Core-core repulsion = 27856.510192 eV Total energy + Delta-G solvation = -4257.389740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.68217 -39.55455 -38.53487 -36.04500 -35.03079 -34.49945 -33.97489 -33.09639 -31.93365 -31.58016 -29.28003 -28.40030 -26.68302 -25.85607 -24.37123 -23.60074 -22.12947 -21.35636 -20.84295 -19.96291 -19.09827 -18.74439 -17.72093 -17.11360 -16.84321 -16.15380 -15.87153 -15.52595 -15.33832 -15.02931 -14.77061 -14.52566 -14.29657 -14.22790 -14.03497 -13.89200 -13.78098 -13.58177 -13.26024 -12.79189 -12.51986 -12.33873 -12.25708 -12.06946 -11.85528 -11.53980 -11.49757 -11.38739 -11.31528 -11.05621 -10.98493 -10.83820 -10.37857 -10.25222 -10.17081 -9.85720 -9.73824 -9.66223 -9.51299 -9.40728 -8.96497 -8.80989 -8.57272 -7.03001 -6.00281 -3.37497 2.57002 2.86986 3.18157 3.30981 3.46203 3.48234 3.49925 4.05771 4.30614 4.48291 4.56792 4.69095 4.74129 4.76961 4.88522 5.00806 5.21018 5.26422 5.30707 5.32983 5.42043 5.44456 5.58360 5.66026 5.75421 5.76783 5.87667 5.87817 5.95408 5.97319 6.00163 6.08443 6.13891 6.24748 6.28424 6.29649 6.46030 6.49575 6.53106 6.61643 6.61804 6.76403 6.81651 7.63586 7.66677 7.83380 7.84290 8.25295 8.40815 8.67101 8.83134 9.64296 10.00464 11.15215 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.002953 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.670883 B = 9479.202613 C = 9954.339068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.136 4.136 4 C 0.156 3.844 5 H 0.108 0.892 6 N -0.733 5.733 7 C 0.710 3.290 8 N -0.872 5.872 9 O -0.561 6.561 10 C 0.495 3.505 11 O -0.510 6.510 12 N -0.720 5.720 13 C 0.138 3.862 14 C 0.090 3.910 15 C -0.164 4.164 16 C 0.108 3.892 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.088 0.912 20 C 0.026 3.974 21 N -0.906 5.906 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.113 3.887 27 C 0.044 3.956 28 O -0.380 6.380 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.398 0.602 37 H 0.392 0.608 38 H 0.413 0.587 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.083 0.917 47 H 0.264 0.736 48 H 0.030 0.970 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -25.868 -8.485 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.175 4.175 4 C 0.046 3.954 5 H 0.125 0.875 6 N -0.390 5.390 7 C 0.408 3.592 8 N -0.441 5.441 9 O -0.435 6.435 10 C 0.278 3.722 11 O -0.383 6.383 12 N -0.374 5.374 13 C 0.014 3.986 14 C 0.048 3.952 15 C -0.221 4.221 16 C -0.018 4.018 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.106 0.894 20 C -0.173 4.173 21 N -0.548 5.548 22 Si 0.707 3.293 23 H -0.213 1.213 24 H -0.229 1.229 25 H -0.195 1.195 26 C -0.013 4.013 27 C -0.034 4.034 28 O -0.299 6.299 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.231 0.769 37 H 0.219 0.781 38 H 0.245 0.755 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.188 -24.490 -9.146 26.143 hybrid contribution 0.777 -0.274 -0.684 1.071 sum 0.965 -24.765 -9.830 26.662 Atomic orbital electron populations 1.21754 0.95639 1.01434 1.02155 1.21450 0.96100 0.96084 1.01710 1.22045 0.92203 0.98192 1.05074 1.20692 0.95850 0.92400 0.86472 0.87451 1.44672 1.57400 1.32653 1.04227 1.15839 0.80443 0.82386 0.80510 1.42975 1.58819 1.34506 1.07790 1.90981 1.41589 1.25202 1.85768 1.20842 0.79132 0.88910 0.83344 1.90762 1.45909 1.65275 1.36368 1.45932 1.66756 1.15400 1.09310 1.21306 1.00390 0.82346 0.94531 1.22237 0.89969 0.93399 0.89546 1.22218 0.95687 1.00271 1.03926 1.21908 0.99854 0.92444 0.87608 1.44306 1.55725 1.29289 1.03501 1.18876 1.30595 0.92206 0.97245 0.89403 1.25235 0.97988 0.96032 0.98058 1.69810 1.30014 1.16187 1.38806 0.87066 0.81733 0.76183 0.84279 1.21304 1.22890 1.19488 1.21625 0.94056 0.89711 0.95932 1.23077 1.00868 0.97575 0.81894 1.87844 1.62035 1.61445 1.18604 0.92532 0.92683 0.92864 0.92122 0.92100 0.90593 0.88575 0.76885 0.78121 0.75547 0.76480 0.91029 0.90189 0.93397 0.90319 0.91575 0.94699 0.89944 0.92623 0.95191 0.91046 0.89708 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.85 5.82 -26.73 -0.16 -1.01 16 3 C -0.14 -1.34 4.54 -26.73 -0.12 -1.47 16 4 C 0.16 1.54 3.01 -69.08 -0.21 1.33 16 5 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 6 N -0.73 -6.54 4.66 -59.81 -0.28 -6.82 16 7 C 0.71 8.52 7.59 -86.92 -0.66 7.86 16 8 N -0.87 -6.58 8.88 27.63 0.25 -6.34 16 9 O -0.56 -9.69 13.03 -18.19 -0.24 -9.93 16 10 C 0.49 7.18 6.82 -10.99 -0.07 7.11 16 11 O -0.51 -9.80 13.68 -17.93 -0.25 -10.05 16 12 N -0.72 -9.88 5.19 -60.29 -0.31 -10.19 16 13 C 0.14 2.33 4.85 -4.04 -0.02 2.31 16 14 C 0.09 1.59 0.78 -90.46 -0.07 1.52 16 15 C -0.16 -2.70 7.87 37.16 0.29 -2.41 16 16 C 0.11 2.38 3.05 -3.53 -0.01 2.36 16 17 N -0.60 -14.03 2.36 -171.83 -0.40 -14.44 16 18 C -0.26 -7.12 10.10 -15.06 -0.15 -7.27 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.03 0.75 5.26 -17.43 -0.09 0.66 16 21 N -0.91 -27.48 13.97 55.49 0.78 -26.71 16 22 Si 0.88 22.59 24.28 -169.99 -4.13 18.46 16 23 H -0.29 -7.14 6.58 56.52 0.37 -6.77 16 24 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 25 H -0.27 -6.89 6.54 56.52 0.37 -6.52 16 26 C 0.11 2.15 6.74 -3.53 -0.02 2.13 16 27 C 0.04 0.69 6.59 37.31 0.25 0.93 16 28 O -0.38 -6.44 10.18 -35.23 -0.36 -6.80 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.45 7.75 -51.93 -0.40 0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.29 6.04 -51.93 -0.31 0.98 16 36 H 0.40 2.06 8.84 -40.82 -0.36 1.70 16 37 H 0.39 1.53 8.84 -40.82 -0.36 1.17 16 38 H 0.41 2.94 8.93 -40.82 -0.36 2.58 16 39 H 0.40 4.54 6.99 -40.82 -0.29 4.26 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.05 0.63 6.58 -51.93 -0.34 0.29 16 43 H 0.08 1.44 6.12 -51.93 -0.32 1.12 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.04 0.80 6.86 -51.93 -0.36 0.44 16 46 H 0.08 1.97 4.60 -51.93 -0.24 1.73 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 50 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.05 0.83 6.26 -51.93 -0.32 0.50 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -37.33 391.08 -8.08 -45.42 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -8.35 Total: 8.22 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.68 Total: 13.27 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: 0.02 Total: -64.49 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.84 Total: -26.77 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.13 Total: 18.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.33 -8.08 -45.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108367328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.043 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds