Wall clock time and date at job start Wed Apr 1 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 C 1.53000 * 109.47596 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46574 * 304.99851 * 4 3 2 6 6 N 1.46501 * 109.46878 * 64.99629 * 4 3 2 7 7 C 1.34776 * 120.00046 * 60.00438 * 6 4 3 8 8 N 1.34773 * 119.99494 * 179.97438 * 7 6 4 9 9 O 1.21580 * 120.00150 * 359.97438 * 7 6 4 10 10 C 1.50697 * 109.47453 * 184.99875 * 4 3 2 11 11 O 1.21277 * 119.99825 * 259.99972 * 10 4 3 12 12 N 1.34773 * 119.99966 * 79.72744 * 10 4 3 13 13 C 1.46501 * 119.99824 * 180.27746 * 12 10 4 14 14 C 1.53001 * 109.47261 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.50959 * 304.99951 * 14 13 12 16 16 C 1.53296 * 109.51456 * 184.89790 * 14 13 12 17 17 N 1.47152 * 108.38405 * 187.77424 * 16 14 13 18 18 C 1.36934 * 120.98069 * 230.51160 * 17 16 14 19 19 H 1.08000 * 119.99807 * 153.74214 * 18 17 16 20 20 C 1.38814 * 119.99968 * 333.74206 * 18 17 16 21 21 N 1.31617 * 119.99990 * 160.03765 * 20 18 17 22 22 Si 1.86797 * 120.00016 * 340.04364 * 20 18 17 23 23 H 1.48499 * 109.47160 * 91.88730 * 22 20 18 24 24 H 1.48500 * 109.46988 * 211.88930 * 22 20 18 25 25 H 1.48501 * 109.46785 * 331.88316 * 22 20 18 26 26 C 1.47154 * 118.03708 * 50.53129 * 17 16 14 27 27 C 1.53293 * 108.38443 * 309.46519 * 26 17 16 28 28 O 1.42962 * 109.26563 * 52.28030 * 27 26 17 29 29 H 1.09001 * 109.47264 * 300.00009 * 1 2 3 30 30 H 1.08994 * 109.47441 * 60.00193 * 1 2 3 31 31 H 1.09004 * 109.46813 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47179 * 239.99503 * 2 1 3 33 33 H 1.09001 * 109.47012 * 119.99326 * 2 1 3 34 34 H 1.08997 * 109.47523 * 59.99714 * 3 2 1 35 35 H 1.09001 * 109.47039 * 299.99922 * 3 2 1 36 36 H 0.97009 * 119.99753 * 240.00345 * 6 4 3 37 37 H 0.97000 * 120.00956 * 0.02562 * 8 7 6 38 38 H 0.97006 * 119.99868 * 179.97438 * 8 7 6 39 39 H 0.97002 * 120.00106 * 0.27127 * 12 10 4 40 40 H 1.09006 * 109.46947 * 299.99289 * 13 12 10 41 41 H 1.08997 * 109.47134 * 59.99502 * 13 12 10 42 42 H 1.08997 * 109.47049 * 59.99791 * 15 14 13 43 43 H 1.09003 * 109.46784 * 179.97438 * 15 14 13 44 44 H 1.09005 * 109.46800 * 299.99879 * 15 14 13 45 45 H 1.09002 * 109.67985 * 307.49330 * 16 14 13 46 46 H 1.08999 * 109.68101 * 68.01193 * 16 14 13 47 47 H 0.96998 * 120.00192 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.67969 * 69.18946 * 26 17 16 49 49 H 1.08997 * 109.68247 * 189.74635 * 26 17 16 50 50 H 1.09005 * 109.51430 * 172.22398 * 27 26 17 51 51 H 1.08999 * 109.51637 * 292.32396 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 7 4.0578 0.8590 -1.2527 7 6 3.7317 1.4245 -2.4319 8 7 4.1809 0.8879 -3.5836 9 8 3.0323 2.4187 -2.4565 10 6 4.0723 2.8580 0.1232 11 8 4.4459 3.4572 -0.8628 12 7 4.1012 3.4598 1.3287 13 6 4.5838 4.8378 1.4481 14 6 4.5126 5.2782 2.9117 15 6 3.0880 5.0838 3.4350 16 6 4.9008 6.7571 3.0209 17 7 5.0067 7.1051 4.4468 18 6 4.3623 8.2015 4.9545 19 1 4.0834 8.2290 5.9975 20 6 4.0676 9.2776 4.1286 21 7 3.1338 10.1376 4.4762 22 14 4.9960 9.5050 2.5238 23 1 4.2585 8.8307 1.4253 24 1 5.1164 10.9541 2.2226 25 1 6.3514 8.9109 2.6477 26 6 5.8258 6.2402 5.3108 27 6 5.3924 4.7865 5.0900 28 8 5.4188 4.4938 3.6910 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 4.6155 0.0655 -1.2331 37 1 4.7386 0.0945 -3.5641 38 1 3.9459 1.2946 -4.4323 39 1 3.8023 2.9805 2.1173 40 1 5.6159 4.8926 1.1017 41 1 3.9613 5.4947 0.8407 42 1 2.8134 4.0317 3.3587 43 1 3.0382 5.3972 4.4778 44 1 2.3979 5.6835 2.8415 45 1 5.8603 6.9219 2.5306 46 1 4.1362 7.3733 2.5479 47 1 2.9281 10.8897 3.8993 48 1 6.8783 6.3530 5.0511 49 1 5.6733 6.5142 6.3548 50 1 6.0762 4.1190 5.6146 51 1 4.3814 4.6458 5.4725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108367328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:57 Heat of formation + Delta-G solvation = -114.227003 kcal Electronic energy + Delta-G solvation = -32115.277527 eV Core-core repulsion = 27856.510192 eV Total energy + Delta-G solvation = -4258.767335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68061 -40.91241 -39.68502 -36.88646 -36.63614 -35.96337 -34.84321 -33.77975 -33.65563 -33.27298 -30.18731 -29.85374 -28.15021 -27.35721 -25.34654 -25.27616 -23.06146 -22.65248 -21.89132 -20.99235 -20.59809 -19.54949 -19.07291 -18.51765 -17.89181 -17.62425 -17.08071 -16.89721 -16.32877 -16.22981 -16.13109 -15.78698 -15.68770 -15.45361 -15.36457 -15.11232 -14.94031 -14.60682 -14.38682 -14.21762 -13.96585 -13.84930 -13.54037 -13.32474 -13.08899 -13.04039 -12.82004 -12.71219 -12.37792 -12.24283 -12.23238 -12.02488 -11.98706 -11.64969 -11.60688 -11.31855 -11.20931 -11.04120 -10.81669 -10.51281 -10.45586 -10.07686 -9.85502 -8.96299 -8.22583 -5.53870 1.22570 1.34152 1.40228 1.65069 1.88021 2.24234 2.33609 2.50123 2.67585 2.97551 3.21337 3.66955 3.71759 3.80323 3.86015 3.89683 3.97718 4.05556 4.27563 4.29651 4.34993 4.42945 4.44478 4.52577 4.59567 4.62356 4.66211 4.72733 4.79478 4.81295 4.89477 5.01350 5.06053 5.06550 5.13432 5.26855 5.35003 5.35242 5.41388 5.49745 5.54091 5.77066 5.99319 6.06815 6.12204 6.24503 6.61251 6.79965 7.22628 7.34062 7.52566 7.87410 7.94123 8.96713 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.002953 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.670883 B = 9479.202613 C = 9954.339068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.132 4.132 4 C 0.162 3.838 5 H 0.157 0.843 6 N -0.719 5.719 7 C 0.699 3.301 8 N -0.855 5.855 9 O -0.619 6.619 10 C 0.488 3.512 11 O -0.561 6.561 12 N -0.707 5.707 13 C 0.147 3.853 14 C 0.105 3.895 15 C -0.158 4.158 16 C 0.103 3.897 17 N -0.616 5.616 18 C -0.239 4.239 19 H 0.066 0.934 20 C -0.026 4.026 21 N -0.950 5.950 22 Si 0.928 3.072 23 H -0.281 1.281 24 H -0.308 1.308 25 H -0.267 1.267 26 C 0.103 3.897 27 C 0.050 3.950 28 O -0.374 6.374 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.415 0.585 39 H 0.415 0.585 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.026 0.974 46 H 0.057 0.943 47 H 0.262 0.738 48 H 0.033 0.967 49 H 0.076 0.924 50 H 0.128 0.872 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -30.252 -7.906 31.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.171 4.171 4 C 0.052 3.948 5 H 0.175 0.825 6 N -0.377 5.377 7 C 0.398 3.602 8 N -0.425 5.425 9 O -0.498 6.498 10 C 0.274 3.726 11 O -0.438 6.438 12 N -0.362 5.362 13 C 0.021 3.979 14 C 0.064 3.936 15 C -0.215 4.215 16 C -0.023 4.023 17 N -0.341 5.341 18 C -0.368 4.368 19 H 0.084 0.916 20 C -0.221 4.221 21 N -0.596 5.596 22 Si 0.758 3.242 23 H -0.208 1.208 24 H -0.237 1.237 25 H -0.191 1.191 26 C -0.021 4.021 27 C -0.027 4.027 28 O -0.293 6.293 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.257 0.743 37 H 0.242 0.758 38 H 0.247 0.753 39 H 0.253 0.747 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.094 0.906 50 H 0.145 0.855 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.332 -29.008 -8.555 30.272 hybrid contribution 0.479 1.029 -0.804 1.391 sum 1.811 -27.978 -9.358 29.558 Atomic orbital electron populations 1.21771 0.96064 1.02054 1.01296 1.21410 0.95663 0.94305 1.03094 1.21979 0.92122 0.99660 1.03323 1.20833 0.95759 0.89942 0.88302 0.82535 1.44515 1.57140 1.32882 1.03136 1.16213 0.80103 0.81992 0.81939 1.42791 1.58159 1.34770 1.06753 1.90954 1.44169 1.27958 1.86741 1.21791 0.77866 0.90555 0.82404 1.90748 1.48141 1.66860 1.38020 1.45766 1.66277 1.14024 1.10084 1.20972 0.99521 0.83992 0.93409 1.21894 0.90804 0.90549 0.90388 1.22158 0.94449 1.02541 1.02352 1.21891 0.98623 0.95279 0.86549 1.44425 1.56354 1.28873 1.04480 1.18859 1.28824 0.92979 0.96172 0.91599 1.25718 0.99082 0.96493 1.00843 1.69909 1.32059 1.17324 1.40334 0.86236 0.80773 0.75403 0.81794 1.20825 1.23712 1.19145 1.21905 0.93558 0.91202 0.95446 1.23171 1.02394 0.95713 0.81441 1.87866 1.61678 1.60531 1.19220 0.92466 0.94558 0.91468 0.92018 0.89256 0.90123 0.92686 0.74347 0.75787 0.75302 0.74682 0.92129 0.92211 0.89424 0.91881 0.93071 0.95597 0.92445 0.92926 0.94914 0.90562 0.85471 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.11 -1.23 5.82 30.59 0.18 -1.05 16 3 C -0.13 -2.33 4.54 30.59 0.14 -2.19 16 4 C 0.16 2.69 3.01 44.24 0.13 2.82 16 5 H 0.16 1.11 8.14 -2.38 -0.02 1.09 16 6 N -0.72 -10.96 4.66 -461.42 -2.15 -13.11 16 7 C 0.70 16.14 7.59 179.06 1.36 17.50 16 8 N -0.86 -11.70 8.88 -184.76 -1.64 -13.34 16 9 O -0.62 -21.89 13.03 18.49 0.24 -21.65 16 10 C 0.49 13.42 6.82 87.66 0.60 14.02 16 11 O -0.56 -21.65 13.68 19.43 0.27 -21.39 16 12 N -0.71 -17.81 5.19 -463.06 -2.40 -20.21 16 13 C 0.15 4.81 4.85 86.38 0.42 5.23 16 14 C 0.11 3.56 0.78 -10.69 -0.01 3.55 16 15 C -0.16 -4.91 7.87 71.98 0.57 -4.35 16 16 C 0.10 4.48 3.05 86.35 0.26 4.74 16 17 N -0.62 -28.35 2.36 -697.55 -1.64 -29.99 16 18 C -0.24 -13.20 10.10 84.03 0.85 -12.36 16 19 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 20 C -0.03 -1.52 5.26 84.86 0.45 -1.08 16 21 N -0.95 -59.51 13.97 21.65 0.30 -59.20 16 22 Si 0.93 48.08 24.28 68.60 1.67 49.74 16 23 H -0.28 -14.17 6.58 99.48 0.65 -13.52 16 24 H -0.31 -16.20 7.11 99.48 0.71 -15.50 16 25 H -0.27 -13.47 6.54 99.48 0.65 -12.82 16 26 C 0.10 3.73 6.74 86.35 0.58 4.31 16 27 C 0.05 1.38 6.59 72.08 0.48 1.86 16 28 O -0.37 -11.37 10.18 -148.98 -1.52 -12.89 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.71 7.75 -2.39 -0.02 0.69 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.49 6.04 -2.39 -0.01 1.47 16 36 H 0.42 2.71 8.84 -92.70 -0.82 1.89 16 37 H 0.41 2.21 8.84 -92.71 -0.82 1.39 16 38 H 0.42 5.58 8.93 -92.70 -0.83 4.76 16 39 H 0.42 7.77 6.99 -92.71 -0.65 7.12 16 40 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.09 2.00 6.58 -2.39 -0.02 1.98 16 43 H 0.06 2.19 6.12 -2.39 -0.01 2.17 16 44 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 46 H 0.06 2.79 4.60 -2.39 -0.01 2.78 16 47 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 2.66 7.96 -2.39 -0.02 2.64 16 50 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 51 H 0.06 1.65 6.26 -2.39 -0.01 1.63 16 Total: -1.00 -86.60 391.08 -2.40 -89.00 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -2.24 Total: 21.32 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 6.71 Total: 31.71 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.53 Total: -135.85 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -1.01 Total: -55.92 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.67 Total: 49.74 kcal Total: -86.60 -2.40 -89.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108367328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.224 kcal (2) G-P(sol) polarization free energy of solvation -86.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds