Wall clock time and date at job start Wed Apr 1 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47573 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47453 * 305.00434 * 4 3 2 6 6 N 1.46500 * 109.46800 * 65.00049 * 4 3 2 7 7 C 1.34773 * 120.00325 * 60.00117 * 6 4 3 8 8 N 1.34774 * 120.00651 * 180.02562 * 7 6 4 9 9 O 1.21590 * 119.99975 * 359.97438 * 7 6 4 10 10 C 1.50695 * 109.47464 * 184.99990 * 4 3 2 11 11 O 1.21282 * 120.00036 * 260.00227 * 10 4 3 12 12 N 1.34774 * 120.00255 * 80.00137 * 10 4 3 13 13 C 1.46502 * 120.00289 * 180.02562 * 12 10 4 14 14 C 1.53001 * 109.47082 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.51448 * 60.09947 * 14 13 12 16 16 C 1.53294 * 109.51225 * 180.25616 * 14 13 12 17 17 N 1.47231 * 108.40580 * 172.23190 * 16 14 13 18 18 C 1.36930 * 121.03478 * 129.45775 * 17 16 14 19 19 H 1.08002 * 120.00530 * 206.18179 * 18 17 16 20 20 C 1.38816 * 119.99608 * 26.18409 * 18 17 16 21 21 N 1.31615 * 120.00526 * 16.88476 * 20 18 17 22 22 Si 1.86806 * 119.99896 * 196.88547 * 20 18 17 23 23 H 1.48497 * 109.46975 * 59.99586 * 22 20 18 24 24 H 1.48495 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47064 * 300.00118 * 22 20 18 26 26 C 1.47154 * 117.98080 * 309.48144 * 17 16 14 27 27 C 1.53298 * 108.41825 * 50.52276 * 26 17 16 28 28 O 1.42959 * 109.51185 * 300.00138 * 14 13 12 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 300.00044 * 1 2 3 31 31 H 1.09007 * 109.47078 * 60.00033 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99956 * 2 1 3 33 33 H 1.09006 * 109.47537 * 119.99705 * 2 1 3 34 34 H 1.09007 * 109.47345 * 59.99963 * 3 2 1 35 35 H 1.09001 * 109.47318 * 300.00332 * 3 2 1 36 36 H 0.97002 * 119.99899 * 240.00166 * 6 4 3 37 37 H 0.97002 * 119.99573 * 0.02562 * 8 7 6 38 38 H 0.96996 * 120.00564 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99622 * 0.02562 * 12 10 4 40 40 H 1.09002 * 109.46877 * 60.00024 * 13 12 10 41 41 H 1.08999 * 109.47195 * 299.99992 * 13 12 10 42 42 H 1.09004 * 109.47366 * 299.89914 * 15 14 13 43 43 H 1.09004 * 109.47010 * 59.89917 * 15 14 13 44 44 H 1.09003 * 109.47551 * 179.89846 * 15 14 13 45 45 H 1.09001 * 109.68145 * 291.94467 * 16 14 13 46 46 H 1.09001 * 109.68444 * 52.49853 * 16 14 13 47 47 H 0.97002 * 120.00383 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.68310 * 290.77594 * 26 17 16 49 49 H 1.09005 * 109.67869 * 170.26376 * 26 17 16 50 50 H 1.09001 * 109.51044 * 67.59999 * 27 26 17 51 51 H 1.09000 * 109.51036 * 187.70217 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 7 4.0587 0.8587 -1.2509 7 6 3.7336 1.4238 -2.4304 8 7 4.1829 0.8864 -3.5819 9 8 3.0342 2.4181 -2.4559 10 6 4.0722 2.8579 0.1245 11 8 4.4467 3.4569 -0.8614 12 7 4.1053 3.4582 1.3307 13 6 4.5930 4.8344 1.4510 14 6 4.5270 5.2727 2.9154 15 6 5.4011 4.3484 3.7654 16 6 5.0312 6.7148 3.0415 17 7 4.7837 7.1752 4.4179 18 6 5.7804 7.7509 5.1597 19 1 5.7490 7.7004 6.2380 20 6 6.8312 8.3995 4.5255 21 7 6.7192 8.7557 3.2634 22 14 8.4043 8.7670 5.4635 23 1 9.0038 7.4955 5.9419 24 1 9.3644 9.4602 4.5676 25 1 8.0953 9.6369 6.6268 26 6 3.4325 6.9974 4.9729 27 6 3.0061 5.5415 4.7528 28 8 3.1745 5.2052 3.3735 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.6164 0.0653 -1.2306 37 1 4.7399 0.0926 -3.5616 38 1 3.9492 1.2934 -4.4307 39 1 3.8061 2.9790 2.1192 40 1 3.9717 5.4943 0.8455 41 1 5.6246 4.8860 1.1029 42 1 5.0389 3.3240 3.6781 43 1 6.4322 4.4003 3.4156 44 1 5.3550 4.6623 4.8083 45 1 6.0998 6.7500 2.8295 46 1 4.4959 7.3537 2.3389 47 1 7.4536 9.2086 2.8202 48 1 2.7363 7.6647 4.4649 49 1 3.4418 7.2199 6.0400 50 1 3.6236 4.8847 5.3656 51 1 1.9593 5.4225 5.0322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108367329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:01 Heat of formation + Delta-G solvation = -89.161550 kcal Electronic energy + Delta-G solvation = -31967.652298 eV Core-core repulsion = 27709.971882 eV Total energy + Delta-G solvation = -4257.680416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.58107 -39.29518 -38.37117 -35.96375 -34.81857 -34.27114 -33.90854 -33.03366 -31.73001 -31.23971 -29.16718 -27.92500 -26.49371 -25.73390 -24.26268 -23.20692 -22.07040 -21.36069 -20.80423 -19.85246 -18.75529 -18.58404 -17.62016 -17.01837 -16.68112 -15.93675 -15.67108 -15.36414 -15.13234 -14.89539 -14.52688 -14.33132 -14.24187 -14.14097 -13.96351 -13.61406 -13.48138 -13.44779 -12.99865 -12.78981 -12.54920 -12.38608 -12.00866 -11.85434 -11.58137 -11.42342 -11.25513 -11.17706 -10.98929 -10.92474 -10.79085 -10.66472 -10.30014 -10.25849 -10.15574 -9.93975 -9.77637 -9.60100 -9.52989 -9.05654 -8.84168 -8.64720 -8.52532 -6.72855 -5.83189 -3.26663 2.65625 2.97099 3.27662 3.34789 3.41080 3.41821 3.58141 4.27600 4.37646 4.44528 4.65963 4.75881 4.82540 4.94425 5.09548 5.19686 5.35512 5.37088 5.50993 5.51745 5.55074 5.64064 5.70335 5.71516 5.93098 5.93524 5.96312 6.01829 6.07711 6.13676 6.18073 6.21051 6.34779 6.37351 6.49374 6.59476 6.62089 6.74502 6.82011 6.84609 6.87861 7.09567 7.49593 7.71028 7.80994 7.90900 7.91455 8.34046 8.53376 8.74425 9.11731 9.75051 10.32611 11.24690 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.002742 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.311109 B =10208.810806 C =11262.189396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.136 4.136 4 C 0.156 3.844 5 H 0.106 0.894 6 N -0.733 5.733 7 C 0.710 3.290 8 N -0.873 5.873 9 O -0.560 6.560 10 C 0.493 3.507 11 O -0.510 6.510 12 N -0.719 5.719 13 C 0.143 3.857 14 C 0.079 3.921 15 C -0.160 4.160 16 C 0.160 3.840 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.383 6.383 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.397 0.603 37 H 0.391 0.609 38 H 0.413 0.587 39 H 0.399 0.601 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.029 0.971 47 H 0.256 0.744 48 H 0.025 0.975 49 H 0.060 0.940 50 H 0.047 0.953 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -22.389 -6.244 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.175 4.175 4 C 0.046 3.954 5 H 0.124 0.876 6 N -0.390 5.390 7 C 0.408 3.592 8 N -0.441 5.441 9 O -0.435 6.435 10 C 0.276 3.724 11 O -0.384 6.384 12 N -0.373 5.373 13 C 0.019 3.981 14 C 0.038 3.962 15 C -0.218 4.218 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.302 6.302 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.230 0.770 37 H 0.218 0.782 38 H 0.244 0.756 39 H 0.233 0.767 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.043 0.957 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.167 -20.985 -7.032 23.263 hybrid contribution 1.437 -0.396 0.740 1.664 sum -5.729 -21.381 -6.292 23.012 Atomic orbital electron populations 1.21751 0.95702 1.01348 1.02144 1.21450 0.96056 0.96194 1.01634 1.22036 0.92242 0.98036 1.05142 1.20696 0.95854 0.92553 0.86346 0.87621 1.44671 1.57389 1.32630 1.04271 1.15840 0.80465 0.82390 0.80504 1.42974 1.58919 1.34430 1.07799 1.90986 1.41559 1.25163 1.85755 1.20805 0.79248 0.88849 0.83450 1.90763 1.45984 1.65307 1.36339 1.45938 1.66432 1.15773 1.09120 1.21290 0.99929 0.81724 0.95152 1.22540 0.82864 0.99182 0.91622 1.22195 0.99924 0.97476 1.02192 1.21301 1.01932 0.87136 0.86319 1.44008 1.05260 1.69513 1.12653 1.19109 1.00268 1.28927 0.90118 0.91475 1.25042 1.00178 0.97760 0.96553 1.70005 1.31639 1.41778 1.11079 0.86362 0.83345 0.78014 0.79003 1.21008 1.21559 1.20861 1.21597 0.88430 0.93672 0.98057 1.23025 0.99777 0.97427 0.82944 1.87822 1.26579 1.89734 1.26114 0.92931 0.92531 0.92706 0.92173 0.92163 0.90474 0.88630 0.76959 0.78161 0.75573 0.76679 0.91040 0.90402 0.93955 0.91995 0.90892 0.88618 0.95278 0.93366 0.95677 0.92108 0.93438 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.12 -0.91 5.82 -26.74 -0.16 -1.06 16 3 C -0.14 -1.43 4.54 -26.73 -0.12 -1.55 16 4 C 0.16 1.63 3.01 -69.09 -0.21 1.42 16 5 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 6 N -0.73 -6.93 4.66 -59.82 -0.28 -7.21 16 7 C 0.71 8.88 7.59 -86.92 -0.66 8.22 16 8 N -0.87 -6.97 8.88 27.63 0.25 -6.72 16 9 O -0.56 -9.99 13.03 -18.20 -0.24 -10.23 16 10 C 0.49 7.54 6.82 -10.99 -0.07 7.47 16 11 O -0.51 -10.22 13.68 -17.93 -0.25 -10.47 16 12 N -0.72 -10.52 5.15 -60.29 -0.31 -10.83 16 13 C 0.14 2.56 4.82 -4.04 -0.02 2.54 16 14 C 0.08 1.48 0.76 -90.47 -0.07 1.41 16 15 C -0.16 -2.72 7.92 37.16 0.29 -2.42 16 16 C 0.16 3.78 4.12 -3.49 -0.01 3.76 16 17 N -0.59 -14.48 2.57 -171.76 -0.44 -14.92 16 18 C -0.26 -6.80 9.65 -15.06 -0.15 -6.95 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 21 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 22 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.11 2.25 6.73 -3.53 -0.02 2.23 16 27 C 0.05 0.80 6.60 37.31 0.25 1.04 16 28 O -0.38 -7.09 9.97 -35.23 -0.35 -7.44 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.35 6.04 -51.93 -0.31 1.04 16 36 H 0.40 2.24 8.84 -40.82 -0.36 1.88 16 37 H 0.39 1.70 8.84 -40.82 -0.36 1.33 16 38 H 0.41 3.10 8.93 -40.82 -0.36 2.74 16 39 H 0.40 4.94 7.20 -40.82 -0.29 4.64 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.04 0.58 6.87 -51.93 -0.36 0.23 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.35 6.12 -51.93 -0.32 1.04 16 45 H 0.10 2.49 6.14 -51.93 -0.32 2.18 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 50 H 0.05 0.79 6.25 -51.93 -0.32 0.46 16 51 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -36.25 398.08 -9.15 -45.40 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.45 Total: 10.12 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: -0.67 Total: 15.29 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.17 Total: -64.98 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.83 Total: -28.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.25 -9.15 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108367329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.765 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds