Wall clock time and date at job start Wed Apr 1 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47573 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47453 * 305.00434 * 4 3 2 6 6 N 1.46500 * 109.46800 * 65.00049 * 4 3 2 7 7 C 1.34773 * 120.00325 * 60.00117 * 6 4 3 8 8 N 1.34774 * 120.00651 * 180.02562 * 7 6 4 9 9 O 1.21590 * 119.99975 * 359.97438 * 7 6 4 10 10 C 1.50695 * 109.47464 * 184.99990 * 4 3 2 11 11 O 1.21282 * 120.00036 * 260.00227 * 10 4 3 12 12 N 1.34774 * 120.00255 * 80.00137 * 10 4 3 13 13 C 1.46502 * 120.00289 * 180.02562 * 12 10 4 14 14 C 1.53001 * 109.47082 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.51448 * 60.09947 * 14 13 12 16 16 C 1.53294 * 109.51225 * 180.25616 * 14 13 12 17 17 N 1.47231 * 108.40580 * 172.23190 * 16 14 13 18 18 C 1.36930 * 121.03478 * 129.45775 * 17 16 14 19 19 H 1.08002 * 120.00530 * 206.18179 * 18 17 16 20 20 C 1.38816 * 119.99608 * 26.18409 * 18 17 16 21 21 N 1.31615 * 120.00526 * 16.88476 * 20 18 17 22 22 Si 1.86806 * 119.99896 * 196.88547 * 20 18 17 23 23 H 1.48497 * 109.46975 * 59.99586 * 22 20 18 24 24 H 1.48495 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47064 * 300.00118 * 22 20 18 26 26 C 1.47154 * 117.98080 * 309.48144 * 17 16 14 27 27 C 1.53298 * 108.41825 * 50.52276 * 26 17 16 28 28 O 1.42959 * 109.51185 * 300.00138 * 14 13 12 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 300.00044 * 1 2 3 31 31 H 1.09007 * 109.47078 * 60.00033 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99956 * 2 1 3 33 33 H 1.09006 * 109.47537 * 119.99705 * 2 1 3 34 34 H 1.09007 * 109.47345 * 59.99963 * 3 2 1 35 35 H 1.09001 * 109.47318 * 300.00332 * 3 2 1 36 36 H 0.97002 * 119.99899 * 240.00166 * 6 4 3 37 37 H 0.97002 * 119.99573 * 0.02562 * 8 7 6 38 38 H 0.96996 * 120.00564 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99622 * 0.02562 * 12 10 4 40 40 H 1.09002 * 109.46877 * 60.00024 * 13 12 10 41 41 H 1.08999 * 109.47195 * 299.99992 * 13 12 10 42 42 H 1.09004 * 109.47366 * 299.89914 * 15 14 13 43 43 H 1.09004 * 109.47010 * 59.89917 * 15 14 13 44 44 H 1.09003 * 109.47551 * 179.89846 * 15 14 13 45 45 H 1.09001 * 109.68145 * 291.94467 * 16 14 13 46 46 H 1.09001 * 109.68444 * 52.49853 * 16 14 13 47 47 H 0.97002 * 120.00383 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.68310 * 290.77594 * 26 17 16 49 49 H 1.09005 * 109.67869 * 170.26376 * 26 17 16 50 50 H 1.09001 * 109.51044 * 67.59999 * 27 26 17 51 51 H 1.09000 * 109.51036 * 187.70217 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 7 4.0587 0.8587 -1.2509 7 6 3.7336 1.4238 -2.4304 8 7 4.1829 0.8864 -3.5819 9 8 3.0342 2.4181 -2.4559 10 6 4.0722 2.8579 0.1245 11 8 4.4467 3.4569 -0.8614 12 7 4.1053 3.4582 1.3307 13 6 4.5930 4.8344 1.4510 14 6 4.5270 5.2727 2.9154 15 6 5.4011 4.3484 3.7654 16 6 5.0312 6.7148 3.0415 17 7 4.7837 7.1752 4.4179 18 6 5.7804 7.7509 5.1597 19 1 5.7490 7.7004 6.2380 20 6 6.8312 8.3995 4.5255 21 7 6.7192 8.7557 3.2634 22 14 8.4043 8.7670 5.4635 23 1 9.0038 7.4955 5.9419 24 1 9.3644 9.4602 4.5676 25 1 8.0953 9.6369 6.6268 26 6 3.4325 6.9974 4.9729 27 6 3.0061 5.5415 4.7528 28 8 3.1745 5.2052 3.3735 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.6164 0.0653 -1.2306 37 1 4.7399 0.0926 -3.5616 38 1 3.9492 1.2934 -4.4307 39 1 3.8061 2.9790 2.1192 40 1 3.9717 5.4943 0.8455 41 1 5.6246 4.8860 1.1029 42 1 5.0389 3.3240 3.6781 43 1 6.4322 4.4003 3.4156 44 1 5.3550 4.6623 4.8083 45 1 6.0998 6.7500 2.8295 46 1 4.4959 7.3537 2.3389 47 1 7.4536 9.2086 2.8202 48 1 2.7363 7.6647 4.4649 49 1 3.4418 7.2199 6.0400 50 1 3.6236 4.8847 5.3656 51 1 1.9593 5.4225 5.0322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108367329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:00 Heat of formation + Delta-G solvation = -118.764530 kcal Electronic energy + Delta-G solvation = -31968.935979 eV Core-core repulsion = 27709.971882 eV Total energy + Delta-G solvation = -4258.964097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63229 -40.73845 -39.62636 -36.84952 -36.48335 -35.85903 -34.83112 -33.76613 -33.25558 -33.11859 -30.06376 -29.53764 -28.03734 -27.30673 -25.30143 -24.95263 -23.11419 -22.68226 -21.86088 -20.96349 -20.25159 -19.52260 -18.96518 -18.44355 -17.78210 -17.40080 -16.85023 -16.80478 -16.37439 -16.11755 -15.92588 -15.59501 -15.55744 -15.40773 -15.19931 -15.04049 -14.79889 -14.59630 -14.35957 -14.27680 -13.84342 -13.47667 -13.25514 -13.16684 -12.90665 -12.80395 -12.74422 -12.51220 -12.43378 -12.22289 -12.18428 -11.97296 -11.94511 -11.83625 -11.59521 -11.26626 -11.09003 -10.80568 -10.74540 -10.48664 -10.44428 -10.02878 -9.83233 -8.72172 -7.89228 -5.36530 1.46290 1.48305 1.55502 1.68358 1.90150 2.27993 2.47430 2.54974 2.80908 3.25262 3.50976 3.70681 3.76896 3.93090 4.01248 4.04242 4.06592 4.13350 4.29765 4.36652 4.44004 4.48306 4.58418 4.66074 4.68230 4.73323 4.80478 4.82014 4.99045 5.02687 5.05967 5.08110 5.14082 5.21717 5.28215 5.36523 5.38046 5.46017 5.51348 5.53787 5.55515 5.61239 6.00774 6.13551 6.29318 6.39170 6.66268 7.06406 7.24219 7.38362 7.76224 7.89038 8.30787 9.16330 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.002742 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.311109 B =10208.810806 C =11262.189396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.131 4.131 4 C 0.162 3.838 5 H 0.158 0.842 6 N -0.718 5.718 7 C 0.699 3.301 8 N -0.855 5.855 9 O -0.620 6.620 10 C 0.487 3.513 11 O -0.563 6.563 12 N -0.705 5.705 13 C 0.154 3.846 14 C 0.096 3.904 15 C -0.150 4.150 16 C 0.168 3.832 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.076 0.924 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.273 1.273 24 H -0.299 1.299 25 H -0.275 1.275 26 C 0.100 3.900 27 C 0.053 3.947 28 O -0.385 6.385 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.415 0.585 39 H 0.414 0.586 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.066 0.934 46 H -0.015 1.015 47 H 0.250 0.750 48 H 0.008 0.992 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -26.350 -4.120 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.170 4.170 4 C 0.052 3.948 5 H 0.175 0.825 6 N -0.376 5.376 7 C 0.397 3.603 8 N -0.424 5.424 9 O -0.498 6.498 10 C 0.272 3.728 11 O -0.440 6.440 12 N -0.359 5.359 13 C 0.029 3.971 14 C 0.055 3.945 15 C -0.208 4.208 16 C 0.041 3.959 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.093 0.907 20 C -0.247 4.247 21 N -0.585 5.585 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.025 4.025 27 C -0.024 4.024 28 O -0.305 6.305 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.242 0.758 38 H 0.247 0.753 39 H 0.252 0.748 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.003 0.997 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.221 -25.056 -4.868 26.526 hybrid contribution 1.368 0.896 0.060 1.636 sum -5.853 -24.160 -4.808 25.319 Atomic orbital electron populations 1.21767 0.95997 1.02069 1.01293 1.21408 0.95738 0.94187 1.03084 1.21962 0.92132 0.99673 1.03196 1.20829 0.95775 0.89869 0.88310 0.82478 1.44504 1.57137 1.32867 1.03132 1.16221 0.80121 0.81980 0.81959 1.42780 1.58236 1.34693 1.06734 1.90960 1.44186 1.27959 1.86742 1.21821 0.77909 0.90626 0.82419 1.90749 1.48216 1.66981 1.38029 1.45750 1.66012 1.14154 1.10009 1.20890 0.98784 0.83402 0.94046 1.22154 0.83509 0.96296 0.92562 1.22093 0.99102 0.98993 1.00589 1.21054 0.99648 0.89824 0.85376 1.44269 1.06634 1.69611 1.12559 1.19497 1.00695 1.27975 0.90730 0.90658 1.25836 1.03257 0.98282 0.97355 1.70196 1.32145 1.43295 1.12832 0.85323 0.79391 0.78055 0.77595 1.19838 1.22518 1.20054 1.21839 0.86159 0.96161 0.98344 1.23111 1.02299 0.94711 0.82279 1.87833 1.25972 1.89394 1.27255 0.91377 0.92471 0.94567 0.91989 0.89257 0.90333 0.92800 0.74339 0.75786 0.75298 0.74814 0.94248 0.91518 0.89804 0.92753 0.91960 0.91589 0.99656 0.94137 0.97365 0.90837 0.91732 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.11 -1.33 5.82 30.59 0.18 -1.15 16 3 C -0.13 -2.53 4.54 30.59 0.14 -2.39 16 4 C 0.16 2.97 3.01 44.24 0.13 3.10 16 5 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 6 N -0.72 -11.95 4.66 -461.43 -2.15 -14.10 16 7 C 0.70 17.13 7.59 179.06 1.36 18.49 16 8 N -0.85 -12.71 8.88 -184.75 -1.64 -14.35 16 9 O -0.62 -22.93 13.03 18.46 0.24 -22.69 16 10 C 0.49 14.54 6.82 87.66 0.60 15.14 16 11 O -0.56 -23.23 13.68 19.42 0.27 -22.96 16 12 N -0.70 -19.76 5.15 -463.06 -2.39 -22.14 16 13 C 0.15 5.68 4.82 86.38 0.42 6.10 16 14 C 0.10 3.60 0.76 -10.70 -0.01 3.59 16 15 C -0.15 -4.78 7.92 71.98 0.57 -4.21 16 16 C 0.17 8.31 4.12 86.34 0.36 8.66 16 17 N -0.61 -30.19 2.57 -697.32 -1.79 -31.99 16 18 C -0.26 -13.92 9.65 84.04 0.81 -13.11 16 19 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 20 C -0.05 -2.89 4.95 84.86 0.42 -2.47 16 21 N -0.94 -56.42 11.14 21.65 0.24 -56.18 16 22 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.10 4.08 6.73 86.35 0.58 4.66 16 27 C 0.05 1.68 6.60 72.08 0.48 2.16 16 28 O -0.39 -13.65 9.97 -148.98 -1.49 -15.14 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.77 7.75 -2.39 -0.02 0.75 16 33 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.05 1.55 6.04 -2.39 -0.01 1.54 16 36 H 0.42 3.20 8.84 -92.71 -0.82 2.38 16 37 H 0.41 2.65 8.84 -92.71 -0.82 1.83 16 38 H 0.42 6.05 8.93 -92.71 -0.83 5.22 16 39 H 0.41 8.87 7.20 -92.71 -0.67 8.20 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.08 1.96 6.87 -2.38 -0.02 1.95 16 43 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.06 2.15 6.12 -2.39 -0.01 2.13 16 45 H 0.07 3.64 6.14 -2.39 -0.01 3.63 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 48 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 49 H 0.07 2.76 7.96 -2.38 -0.02 2.74 16 50 H 0.06 1.88 6.25 -2.39 -0.01 1.86 16 51 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -86.02 398.08 -2.09 -88.11 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -2.15 Total: 27.85 kcal Atomic # 6 Polarization: 30.42 SS G_CDS: 6.74 Total: 37.16 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -7.73 Total: -138.76 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -0.98 Total: -60.79 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -86.02 -2.09 -88.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108367329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.659 kcal (2) G-P(sol) polarization free energy of solvation -86.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds