Wall clock time and date at job start Wed Apr 1 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.52995 * 109.46936 * 119.99913 * 2 1 3 5 5 H 1.09004 * 109.47709 * 57.60219 * 4 2 1 6 6 C 1.53004 * 109.47165 * 177.60480 * 4 2 1 7 7 C 1.50705 * 109.46867 * 296.12870 * 6 4 2 8 8 C 1.38233 * 119.99712 * 275.83769 * 7 6 4 9 9 C 1.38234 * 119.99851 * 179.76652 * 8 7 6 10 10 C 1.38237 * 119.99868 * 0.48531 * 9 8 7 11 11 C 1.38233 * 119.99661 * 359.78952 * 10 9 8 12 12 C 1.38226 * 120.00458 * 359.95792 * 11 10 9 13 13 C 1.50706 * 109.47195 * 297.60304 * 4 2 1 14 14 O 1.21282 * 119.99648 * 266.63732 * 13 4 2 15 15 N 1.34771 * 120.00253 * 86.63381 * 13 4 2 16 16 C 1.46499 * 120.00187 * 174.87852 * 15 13 4 17 17 H 1.08999 * 115.49412 * 350.37972 * 16 15 13 18 18 C 1.52996 * 117.44085 * 205.00159 * 16 15 13 19 19 H 1.08998 * 119.54696 * 4.11821 * 18 16 15 20 20 C 1.54388 * 118.90040 * 161.24988 * 18 16 15 21 21 N 1.48150 * 104.61566 * 87.20839 * 20 18 16 22 22 C 1.36944 * 127.83638 * 140.39149 * 21 20 18 23 23 H 1.07996 * 120.00110 * 192.70010 * 22 21 20 24 24 C 1.38811 * 119.99706 * 12.70750 * 22 21 20 25 25 N 1.31617 * 120.00606 * 12.83396 * 24 22 21 26 26 Si 1.86805 * 119.99676 * 192.82790 * 24 22 21 27 27 H 1.48505 * 109.46760 * 94.97900 * 26 24 22 28 28 H 1.48495 * 109.47066 * 214.97473 * 26 24 22 29 29 H 1.48493 * 109.47147 * 334.97967 * 26 24 22 30 30 C 1.48146 * 104.32529 * 320.41846 * 21 20 18 31 31 C 1.52994 * 117.44478 * 135.76120 * 16 15 13 32 32 H 1.08998 * 119.53691 * 355.88017 * 31 16 15 33 33 H 1.08993 * 109.47304 * 293.42585 * 1 2 3 34 34 H 1.08998 * 109.47071 * 53.42188 * 1 2 3 35 35 H 1.09002 * 109.47233 * 173.42453 * 1 2 3 36 36 H 1.09000 * 109.47193 * 239.99673 * 2 1 3 37 37 H 1.09000 * 109.47069 * 185.10036 * 3 2 1 38 38 H 1.09010 * 109.46836 * 305.09545 * 3 2 1 39 39 H 1.08994 * 109.47463 * 65.09853 * 3 2 1 40 40 H 1.09003 * 109.46913 * 56.12717 * 6 4 2 41 41 H 1.09002 * 109.47431 * 176.12784 * 6 4 2 42 42 H 1.08002 * 120.00016 * 359.97438 * 8 7 6 43 43 H 1.08004 * 120.00128 * 180.24770 * 9 8 7 44 44 H 1.07998 * 120.00075 * 179.76831 * 10 9 8 45 45 H 1.08008 * 119.99564 * 179.97438 * 11 10 9 46 46 H 1.07995 * 120.00315 * 180.02562 * 12 11 10 47 47 H 0.96999 * 119.99759 * 354.87848 * 15 13 4 48 48 H 1.08998 * 110.41307 * 205.99161 * 20 18 16 49 49 H 1.09001 * 110.40671 * 328.43141 * 20 18 16 50 50 H 0.97000 * 120.00607 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.40338 * 280.79528 * 30 21 20 52 52 H 1.09004 * 110.50531 * 158.41997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6420 -1.7358 1.2711 6 6 3.5688 -0.7737 1.2195 7 6 4.0203 -1.5983 0.0416 8 6 4.0908 -2.9747 0.1481 9 6 4.5003 -3.7315 -0.9338 10 6 4.8489 -3.1111 -2.1189 11 6 4.7838 -1.7343 -2.2234 12 6 4.3693 -0.9779 -1.1433 13 6 1.5867 0.0227 2.4790 14 8 2.3087 0.8561 2.9841 15 7 0.3790 -0.2380 3.0175 16 6 -0.0160 0.4018 4.2748 17 1 0.7748 0.9424 4.7948 18 6 -1.0622 -0.3137 5.1317 19 1 -1.4286 -1.2936 4.8258 20 6 -1.1906 0.0646 6.6230 21 7 -2.1336 1.2071 6.6390 22 6 -3.1306 1.4608 7.5429 23 1 -3.8752 2.2131 7.3286 24 6 -3.1839 0.7512 8.7347 25 7 -2.1545 0.0242 9.1145 26 14 -4.7167 0.8280 9.7997 27 1 -5.5970 -0.3256 9.4841 28 1 -4.3275 0.7764 11.2318 29 1 -5.4441 2.0941 9.5296 30 6 -1.7540 2.0124 5.4549 31 6 -1.4336 0.9705 4.3616 32 1 -2.0767 0.9473 3.4818 33 1 -0.3633 0.4085 0.9429 34 1 -0.3633 0.6124 -0.8252 35 1 -0.3634 -1.0209 -0.1177 36 1 1.8934 -0.5139 -0.8899 37 1 3.1262 1.4438 -0.0914 38 1 1.6040 1.9820 -0.8409 39 1 1.7532 1.9293 0.9321 40 1 3.9653 0.2376 1.1284 41 1 3.9349 -1.2258 2.1413 42 1 3.8227 -3.4591 1.0754 43 1 4.5515 -4.8072 -0.8520 44 1 5.1724 -3.7021 -2.9630 45 1 5.0566 -1.2495 -3.1493 46 1 4.3181 0.0978 -1.2251 47 1 -0.2286 -0.8493 2.5725 48 1 -1.5961 -0.7708 7.1936 49 1 -0.2225 0.3654 7.0235 50 1 -2.1919 -0.4720 9.9471 51 1 -0.8739 2.6173 5.6731 52 1 -2.5831 2.6477 5.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114831589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:18 Heat of formation + Delta-G solvation = 33.766967 kcal Electronic energy + Delta-G solvation = -29724.961224 eV Core-core repulsion = 25883.460652 eV Total energy + Delta-G solvation = -3841.500572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.64064 -39.42469 -38.47835 -36.24912 -34.52431 -32.94689 -32.52293 -31.17318 -30.33127 -29.20852 -27.37935 -27.15260 -25.83750 -24.77185 -22.85689 -22.34724 -21.61941 -20.86666 -20.43068 -19.32032 -19.13108 -17.19805 -16.90338 -16.73938 -16.24545 -15.96580 -15.48228 -15.21355 -14.79353 -14.60141 -14.01950 -13.98052 -13.70478 -13.57555 -13.43311 -13.25262 -13.01157 -12.86454 -12.75793 -12.51289 -12.17111 -12.13633 -11.91263 -11.56081 -11.49069 -11.32656 -11.24567 -11.16086 -11.00107 -10.98115 -10.84079 -10.72449 -10.38934 -10.18251 -10.13908 -9.73688 -9.63722 -9.19098 -9.16495 -8.94059 -8.73212 -8.32737 -6.90562 -5.80801 -3.12670 1.06901 1.12473 2.64846 3.11511 3.38096 3.43522 3.45742 3.52814 4.28526 4.35994 4.45693 4.47480 4.60627 4.65010 4.69776 4.74781 4.84791 5.01457 5.12167 5.14664 5.17699 5.24185 5.28706 5.35805 5.37781 5.38601 5.49778 5.55022 5.60601 5.63479 5.70832 5.74541 5.80176 5.83130 5.84646 5.91477 5.95707 6.08626 6.14576 6.18149 6.21127 6.24426 6.27796 6.39868 6.52162 6.68880 6.73483 6.80988 6.89336 7.34009 7.50829 7.59477 7.70489 8.18443 8.30238 9.09730 9.73071 10.49148 11.33659 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.002009 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.046316 B =13933.141988 C =14401.508643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.084 4.084 3 C -0.155 4.155 4 C -0.096 4.096 5 H 0.090 0.910 6 C -0.068 4.068 7 C -0.074 4.074 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.127 4.127 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.524 3.476 14 O -0.535 6.535 15 N -0.698 5.698 16 C 0.100 3.900 17 H 0.130 0.870 18 C -0.181 4.181 19 H 0.101 0.899 20 C 0.185 3.815 21 N -0.593 5.593 22 C -0.226 4.226 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.914 5.914 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.157 3.843 31 C -0.186 4.186 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.398 0.602 48 H 0.092 0.908 49 H 0.025 0.975 50 H 0.254 0.746 51 H 0.027 0.973 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 -6.224 -24.674 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.103 4.103 3 C -0.212 4.212 4 C -0.117 4.117 5 H 0.108 0.892 6 C -0.105 4.105 7 C -0.074 4.074 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.145 4.145 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.311 3.689 14 O -0.411 6.411 15 N -0.347 5.347 16 C -0.006 4.006 17 H 0.148 0.852 18 C -0.202 4.202 19 H 0.119 0.881 20 C 0.059 3.941 21 N -0.317 5.317 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.561 5.561 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.205 1.205 30 C 0.030 3.970 31 C -0.207 4.207 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.233 0.767 48 H 0.111 0.889 49 H 0.043 0.957 50 H 0.064 0.936 51 H 0.044 0.956 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.352 -5.668 -24.018 27.596 hybrid contribution -1.196 -0.520 0.230 1.325 sum 11.156 -6.188 -23.788 26.993 Atomic orbital electron populations 1.22073 0.94930 1.01990 1.02984 1.21065 0.95877 0.96814 0.96500 1.21987 1.01180 0.95381 1.02614 1.21391 0.96710 1.00135 0.93468 0.89162 1.20497 0.93091 1.00901 0.96022 1.19875 0.98488 0.93855 0.95224 1.21103 1.00051 0.93426 0.98931 1.21148 0.99372 0.99825 0.93320 1.21139 1.00679 0.94857 0.97836 1.21148 0.99893 0.94100 0.98652 1.21127 0.99371 1.00010 0.92750 1.20441 0.81023 0.82778 0.84679 1.90701 1.54317 1.33404 1.62708 1.45583 1.17469 1.47367 1.24249 1.21786 0.92870 0.99923 0.86008 0.85211 1.24665 1.01568 0.95838 0.98116 0.88132 1.21052 0.92842 0.92719 0.87471 1.45219 1.37037 1.22357 1.27059 1.19020 1.01599 1.19248 0.95557 0.90392 1.24851 0.97865 1.00896 0.96788 1.69917 1.28237 1.34643 1.23255 0.86098 0.82346 0.77743 0.79582 1.21577 1.21716 1.20495 1.21094 0.97420 0.91826 0.86667 1.24337 0.96984 0.98843 1.00560 0.88141 0.91766 0.92104 0.92466 0.89819 0.92300 0.92688 0.91636 0.89320 0.90395 0.86035 0.86192 0.86350 0.86222 0.85955 0.76729 0.88941 0.95709 0.93551 0.95553 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.75 37.16 0.33 -1.03 16 2 C -0.08 -0.72 2.42 -90.62 -0.22 -0.94 16 3 C -0.15 -1.47 8.51 37.16 0.32 -1.15 16 4 C -0.10 -0.92 2.01 -91.77 -0.18 -1.10 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.07 -0.65 4.12 -27.88 -0.11 -0.77 16 7 C -0.07 -0.64 4.49 -104.62 -0.47 -1.11 16 8 C -0.12 -0.97 9.73 -39.58 -0.38 -1.35 16 9 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 10 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 11 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 12 C -0.11 -0.92 8.36 -39.59 -0.33 -1.25 16 13 C 0.52 6.90 5.22 -10.98 -0.06 6.85 16 14 O -0.54 -9.05 14.90 5.56 0.08 -8.97 16 15 N -0.70 -9.07 4.50 -53.81 -0.24 -9.31 16 16 C 0.10 1.66 6.01 -67.94 -0.41 1.25 16 17 H 0.13 2.47 7.43 -51.93 -0.39 2.08 16 18 C -0.18 -3.37 7.03 -89.22 -0.63 -4.00 16 19 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 20 C 0.19 4.45 5.77 -2.41 -0.01 4.43 16 21 N -0.59 -15.22 3.38 -168.86 -0.57 -15.79 16 22 C -0.23 -6.30 10.35 -15.06 -0.16 -6.45 16 23 H 0.08 2.10 7.86 -52.49 -0.41 1.69 16 24 C -0.01 -0.20 5.37 -17.43 -0.09 -0.29 16 25 N -0.91 -26.76 10.88 55.49 0.60 -26.16 16 26 Si 0.91 21.90 29.57 -169.99 -5.03 16.87 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.16 3.33 7.06 -2.41 -0.02 3.31 16 31 C -0.19 -3.30 7.03 -89.23 -0.63 -3.92 16 32 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.06 0.62 5.78 -51.93 -0.30 0.32 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.67 6.39 -51.93 -0.33 0.34 16 37 H 0.06 0.52 5.64 -51.93 -0.29 0.23 16 38 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.06 0.80 6.41 -51.93 -0.33 0.47 16 40 H 0.09 0.92 6.17 -51.93 -0.32 0.60 16 41 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 46 H 0.12 0.87 7.02 -52.49 -0.37 0.50 16 47 H 0.40 4.20 7.94 -40.82 -0.32 3.87 16 48 H 0.09 2.47 6.44 -51.93 -0.33 2.13 16 49 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -31.68 405.94 -11.75 -43.43 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.46 Total: 5.20 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -4.26 Total: -11.39 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.21 Total: -51.26 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.68 -11.75 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114831589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.195 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds