Wall clock time and date at job start Wed Apr 1 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.52995 * 109.46936 * 119.99913 * 2 1 3 5 5 H 1.09004 * 109.47709 * 57.60219 * 4 2 1 6 6 C 1.53004 * 109.47165 * 177.60480 * 4 2 1 7 7 C 1.50705 * 109.46867 * 296.12870 * 6 4 2 8 8 C 1.38233 * 119.99712 * 275.83769 * 7 6 4 9 9 C 1.38234 * 119.99851 * 179.76652 * 8 7 6 10 10 C 1.38237 * 119.99868 * 0.48531 * 9 8 7 11 11 C 1.38233 * 119.99661 * 359.78952 * 10 9 8 12 12 C 1.38226 * 120.00458 * 359.95792 * 11 10 9 13 13 C 1.50706 * 109.47195 * 297.60304 * 4 2 1 14 14 O 1.21282 * 119.99648 * 266.63732 * 13 4 2 15 15 N 1.34771 * 120.00253 * 86.63381 * 13 4 2 16 16 C 1.46499 * 120.00187 * 174.87852 * 15 13 4 17 17 H 1.08999 * 115.49412 * 350.37972 * 16 15 13 18 18 C 1.52996 * 117.44085 * 205.00159 * 16 15 13 19 19 H 1.08998 * 119.54696 * 4.11821 * 18 16 15 20 20 C 1.54388 * 118.90040 * 161.24988 * 18 16 15 21 21 N 1.48150 * 104.61566 * 87.20839 * 20 18 16 22 22 C 1.36944 * 127.83638 * 140.39149 * 21 20 18 23 23 H 1.07996 * 120.00110 * 192.70010 * 22 21 20 24 24 C 1.38811 * 119.99706 * 12.70750 * 22 21 20 25 25 N 1.31617 * 120.00606 * 12.83396 * 24 22 21 26 26 Si 1.86805 * 119.99676 * 192.82790 * 24 22 21 27 27 H 1.48505 * 109.46760 * 94.97900 * 26 24 22 28 28 H 1.48495 * 109.47066 * 214.97473 * 26 24 22 29 29 H 1.48493 * 109.47147 * 334.97967 * 26 24 22 30 30 C 1.48146 * 104.32529 * 320.41846 * 21 20 18 31 31 C 1.52994 * 117.44478 * 135.76120 * 16 15 13 32 32 H 1.08998 * 119.53691 * 355.88017 * 31 16 15 33 33 H 1.08993 * 109.47304 * 293.42585 * 1 2 3 34 34 H 1.08998 * 109.47071 * 53.42188 * 1 2 3 35 35 H 1.09002 * 109.47233 * 173.42453 * 1 2 3 36 36 H 1.09000 * 109.47193 * 239.99673 * 2 1 3 37 37 H 1.09000 * 109.47069 * 185.10036 * 3 2 1 38 38 H 1.09010 * 109.46836 * 305.09545 * 3 2 1 39 39 H 1.08994 * 109.47463 * 65.09853 * 3 2 1 40 40 H 1.09003 * 109.46913 * 56.12717 * 6 4 2 41 41 H 1.09002 * 109.47431 * 176.12784 * 6 4 2 42 42 H 1.08002 * 120.00016 * 359.97438 * 8 7 6 43 43 H 1.08004 * 120.00128 * 180.24770 * 9 8 7 44 44 H 1.07998 * 120.00075 * 179.76831 * 10 9 8 45 45 H 1.08008 * 119.99564 * 179.97438 * 11 10 9 46 46 H 1.07995 * 120.00315 * 180.02562 * 12 11 10 47 47 H 0.96999 * 119.99759 * 354.87848 * 15 13 4 48 48 H 1.08998 * 110.41307 * 205.99161 * 20 18 16 49 49 H 1.09001 * 110.40671 * 328.43141 * 20 18 16 50 50 H 0.97000 * 120.00607 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.40338 * 280.79528 * 30 21 20 52 52 H 1.09004 * 110.50531 * 158.41997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6420 -1.7358 1.2711 6 6 3.5688 -0.7737 1.2195 7 6 4.0203 -1.5983 0.0416 8 6 4.0908 -2.9747 0.1481 9 6 4.5003 -3.7315 -0.9338 10 6 4.8489 -3.1111 -2.1189 11 6 4.7838 -1.7343 -2.2234 12 6 4.3693 -0.9779 -1.1433 13 6 1.5867 0.0227 2.4790 14 8 2.3087 0.8561 2.9841 15 7 0.3790 -0.2380 3.0175 16 6 -0.0160 0.4018 4.2748 17 1 0.7748 0.9424 4.7948 18 6 -1.0622 -0.3137 5.1317 19 1 -1.4286 -1.2936 4.8258 20 6 -1.1906 0.0646 6.6230 21 7 -2.1336 1.2071 6.6390 22 6 -3.1306 1.4608 7.5429 23 1 -3.8752 2.2131 7.3286 24 6 -3.1839 0.7512 8.7347 25 7 -2.1545 0.0242 9.1145 26 14 -4.7167 0.8280 9.7997 27 1 -5.5970 -0.3256 9.4841 28 1 -4.3275 0.7764 11.2318 29 1 -5.4441 2.0941 9.5296 30 6 -1.7540 2.0124 5.4549 31 6 -1.4336 0.9705 4.3616 32 1 -2.0767 0.9473 3.4818 33 1 -0.3633 0.4085 0.9429 34 1 -0.3633 0.6124 -0.8252 35 1 -0.3634 -1.0209 -0.1177 36 1 1.8934 -0.5139 -0.8899 37 1 3.1262 1.4438 -0.0914 38 1 1.6040 1.9820 -0.8409 39 1 1.7532 1.9293 0.9321 40 1 3.9653 0.2376 1.1284 41 1 3.9349 -1.2258 2.1413 42 1 3.8227 -3.4591 1.0754 43 1 4.5515 -4.8072 -0.8520 44 1 5.1724 -3.7021 -2.9630 45 1 5.0566 -1.2495 -3.1493 46 1 4.3181 0.0978 -1.2251 47 1 -0.2286 -0.8493 2.5725 48 1 -1.5961 -0.7708 7.1936 49 1 -0.2225 0.3654 7.0235 50 1 -2.1919 -0.4720 9.9471 51 1 -0.8739 2.6173 5.6731 52 1 -2.5831 2.6477 5.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114831589.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:17 Heat of formation + Delta-G solvation = 17.606567 kcal Electronic energy + Delta-G solvation = -29725.661992 eV Core-core repulsion = 25883.460652 eV Total energy + Delta-G solvation = -3842.201339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.64469 -40.42300 -39.71208 -37.12913 -36.11007 -34.34475 -33.47460 -32.13728 -31.70345 -29.96227 -28.93954 -28.15228 -27.60504 -25.70797 -23.75363 -23.39552 -22.45249 -22.01264 -21.89040 -20.90196 -20.16343 -18.87180 -18.04483 -17.61374 -17.38582 -16.87709 -16.73317 -16.11432 -15.93594 -15.69285 -15.43795 -15.02337 -14.69570 -14.65699 -14.62538 -14.43573 -14.10922 -13.82815 -13.65804 -13.51758 -13.38790 -13.29565 -13.09020 -12.88467 -12.85164 -12.72263 -12.59351 -12.14042 -12.03281 -11.92581 -11.89384 -11.87464 -11.82008 -11.69122 -11.63508 -11.43518 -10.88485 -10.76078 -10.63028 -9.73925 -9.69403 -9.53447 -8.96890 -7.93186 -5.27832 0.49286 0.57130 1.46548 1.48140 1.56083 1.57862 1.97970 2.47941 2.83020 2.94486 3.26100 3.50269 3.61691 3.72849 3.81287 3.86798 3.91239 4.04619 4.08366 4.12973 4.20885 4.23698 4.36364 4.38591 4.41993 4.47405 4.51373 4.58302 4.71391 4.74254 4.78478 4.82626 4.89817 4.94819 4.96756 4.99192 5.03994 5.06941 5.17945 5.25346 5.26043 5.27155 5.41036 5.42470 5.43459 5.47531 5.54784 5.62866 5.65645 5.70730 5.79730 6.14044 6.19133 6.53591 6.98520 7.24314 7.65906 8.43608 9.20876 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025471 B = 0.002009 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.046316 B =13933.141988 C =14401.508643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.077 4.077 3 C -0.153 4.153 4 C -0.085 4.085 5 H 0.112 0.888 6 C -0.063 4.063 7 C -0.083 4.083 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.131 4.131 11 C -0.125 4.125 12 C -0.123 4.123 13 C 0.525 3.475 14 O -0.575 6.575 15 N -0.684 5.684 16 C 0.123 3.877 17 H 0.103 0.897 18 C -0.179 4.179 19 H 0.125 0.875 20 C 0.189 3.811 21 N -0.617 5.617 22 C -0.240 4.240 23 H 0.084 0.916 24 C -0.064 4.064 25 N -0.948 5.948 26 Si 0.982 3.018 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.266 1.266 30 C 0.150 3.850 31 C -0.169 4.169 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.415 0.585 48 H 0.061 0.939 49 H -0.006 1.006 50 H 0.250 0.750 51 H 0.016 0.984 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.170 -7.323 -27.805 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.095 4.095 3 C -0.210 4.210 4 C -0.107 4.107 5 H 0.130 0.870 6 C -0.100 4.100 7 C -0.083 4.083 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.149 4.149 11 C -0.143 4.143 12 C -0.140 4.140 13 C 0.313 3.687 14 O -0.454 6.454 15 N -0.335 5.335 16 C 0.016 3.984 17 H 0.121 0.879 18 C -0.200 4.200 19 H 0.143 0.857 20 C 0.063 3.937 21 N -0.341 5.341 22 C -0.369 4.369 23 H 0.101 0.899 24 C -0.258 4.258 25 N -0.595 5.595 26 Si 0.810 3.190 27 H -0.211 1.211 28 H -0.222 1.222 29 H -0.191 1.191 30 C 0.024 3.976 31 C -0.190 4.190 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.253 0.747 48 H 0.080 0.920 49 H 0.012 0.988 50 H 0.059 0.941 51 H 0.034 0.966 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.580 -6.772 -27.205 30.333 hybrid contribution -0.839 -0.119 1.172 1.446 sum 10.741 -6.890 -26.033 28.993 Atomic orbital electron populations 1.22084 0.94269 1.03153 1.02475 1.21048 0.96337 0.95958 0.96174 1.21965 1.01509 0.96069 1.01458 1.21405 0.96747 1.00667 0.91851 0.87033 1.20393 0.93050 1.00355 0.96230 1.19772 0.99583 0.93970 0.94966 1.21250 1.00411 0.93379 0.99575 1.21403 0.98976 1.00759 0.93195 1.21452 0.99986 0.95099 0.98362 1.21414 0.99395 0.94363 0.99119 1.21251 0.99525 1.00450 0.92818 1.21131 0.80250 0.82134 0.85165 1.90693 1.55395 1.35274 1.64050 1.45420 1.17961 1.47294 1.22803 1.21296 0.91577 0.98669 0.86907 0.87870 1.24332 1.03690 0.97335 0.94663 0.85720 1.20789 0.90856 0.91366 0.90721 1.45527 1.36891 1.23719 1.27951 1.19413 1.02144 1.19151 0.96169 0.89861 1.25728 1.00766 1.00992 0.98302 1.70115 1.30189 1.35705 1.23541 0.85015 0.78675 0.78184 0.77174 1.21115 1.22229 1.19079 1.21222 0.97379 0.92580 0.86431 1.24232 0.98144 0.96440 1.00217 0.85000 0.93197 0.91422 0.90737 0.88402 0.92116 0.91425 0.94626 0.90596 0.91571 0.85559 0.84604 0.84417 0.84441 0.85487 0.74692 0.92049 0.98785 0.94065 0.96604 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.75 71.98 0.63 -1.58 16 2 C -0.08 -1.14 2.42 -10.80 -0.03 -1.17 16 3 C -0.15 -2.74 8.51 71.98 0.61 -2.12 16 4 C -0.09 -1.50 2.01 -11.54 -0.02 -1.52 16 5 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 6 C -0.06 -1.17 4.12 29.85 0.12 -1.04 16 7 C -0.08 -1.31 4.49 -19.87 -0.09 -1.40 16 8 C -0.13 -1.89 9.73 22.27 0.22 -1.67 16 9 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 10 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 11 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 12 C -0.12 -1.74 8.36 22.27 0.19 -1.55 16 13 C 0.52 13.42 5.22 87.66 0.46 13.88 16 14 O -0.58 -19.84 14.90 -3.04 -0.05 -19.89 16 15 N -0.68 -16.70 4.50 -442.55 -1.99 -18.69 16 16 C 0.12 4.03 6.01 44.99 0.27 4.30 16 17 H 0.10 4.05 7.43 -2.39 -0.02 4.03 16 18 C -0.18 -6.60 7.03 -9.89 -0.07 -6.67 16 19 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 20 C 0.19 9.42 5.77 86.53 0.50 9.92 16 21 N -0.62 -32.36 3.38 -688.14 -2.33 -34.68 16 22 C -0.24 -13.57 10.35 84.03 0.87 -12.70 16 23 H 0.08 4.48 7.86 -2.91 -0.02 4.46 16 24 C -0.06 -3.67 5.37 84.86 0.46 -3.22 16 25 N -0.95 -57.46 10.88 21.65 0.24 -57.22 16 26 Si 0.98 45.59 29.57 68.60 2.03 47.62 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 30 C 0.15 6.37 7.06 86.53 0.61 6.98 16 31 C -0.17 -5.78 7.03 -9.89 -0.07 -5.84 16 32 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.05 0.83 5.78 -2.39 -0.01 0.81 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 1.27 6.39 -2.39 -0.02 1.26 16 37 H 0.06 1.04 5.64 -2.39 -0.01 1.03 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.03 0.85 6.41 -2.39 -0.02 0.84 16 40 H 0.08 1.60 6.17 -2.39 -0.01 1.58 16 41 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 42 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 46 H 0.13 1.61 7.02 -2.91 -0.02 1.59 16 47 H 0.42 7.50 7.94 -92.71 -0.74 6.77 16 48 H 0.06 3.43 6.44 -2.39 -0.02 3.41 16 49 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 50 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 51 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.06 2.51 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -71.38 405.94 3.40 -67.98 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.18 Total: 24.28 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.33 Total: -9.40 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.08 Total: -110.60 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.38 3.40 -67.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114831589.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.584 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds