Wall clock time and date at job start Wed Apr 1 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47030 * 2 1 4 4 C 1.53000 * 109.47005 * 120.00378 * 2 1 3 5 5 H 1.09008 * 109.46767 * 185.03145 * 4 2 1 6 6 C 1.52994 * 109.47338 * 65.03010 * 4 2 1 7 7 C 1.50697 * 109.47227 * 67.13002 * 6 4 2 8 8 C 1.38237 * 120.00176 * 263.66130 * 7 6 4 9 9 C 1.38234 * 119.99422 * 179.76704 * 8 7 6 10 10 C 1.38239 * 120.00620 * 0.48709 * 9 8 7 11 11 C 1.38235 * 119.99616 * 359.79240 * 10 9 8 12 12 C 1.38230 * 119.99999 * 359.95291 * 11 10 9 13 13 C 1.50696 * 109.46951 * 305.02363 * 4 2 1 14 14 O 1.21282 * 119.99833 * 106.27871 * 13 4 2 15 15 N 1.34772 * 120.00666 * 286.27494 * 13 4 2 16 16 C 1.46498 * 120.00390 * 186.69750 * 15 13 4 17 17 H 1.09000 * 115.51707 * 9.41751 * 16 15 13 18 18 C 1.52997 * 117.44358 * 224.00209 * 16 15 13 19 19 H 1.08997 * 119.54444 * 4.12026 * 18 16 15 20 20 C 1.57746 * 116.08139 * 161.57799 * 18 16 15 21 21 N 1.48153 * 104.61411 * 87.40891 * 20 18 16 22 22 C 1.36931 * 127.83273 * 139.76509 * 21 20 18 23 23 H 1.07999 * 120.00814 * 336.52285 * 22 21 20 24 24 C 1.38821 * 119.99592 * 156.52264 * 22 21 20 25 25 N 1.31617 * 119.99721 * 4.33169 * 24 22 21 26 26 Si 1.86799 * 119.99824 * 184.32911 * 24 22 21 27 27 H 1.48502 * 109.47101 * 60.00074 * 26 24 22 28 28 H 1.48506 * 109.46903 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47386 * 299.99849 * 26 24 22 30 30 C 1.48137 * 104.32229 * 319.76110 * 21 20 18 31 31 C 1.52999 * 117.44252 * 154.83429 * 16 15 13 32 32 H 1.09003 * 119.53860 * 355.88337 * 31 16 15 33 33 H 1.09000 * 109.47192 * 305.12249 * 1 2 3 34 34 H 1.09006 * 109.46773 * 65.11978 * 1 2 3 35 35 H 1.08993 * 109.47471 * 185.12164 * 1 2 3 36 36 H 1.09004 * 109.46921 * 240.00218 * 2 1 3 37 37 H 1.09008 * 109.47078 * 177.31558 * 3 2 1 38 38 H 1.09001 * 109.47269 * 297.31635 * 3 2 1 39 39 H 1.09006 * 109.46939 * 57.32461 * 3 2 1 40 40 H 1.09001 * 109.47227 * 187.13714 * 6 4 2 41 41 H 1.09005 * 109.46627 * 307.13366 * 6 4 2 42 42 H 1.07992 * 120.00032 * 0.02562 * 8 7 6 43 43 H 1.08004 * 119.99372 * 180.25651 * 9 8 7 44 44 H 1.07997 * 120.00141 * 179.77100 * 10 9 8 45 45 H 1.08004 * 120.00028 * 179.97438 * 11 10 9 46 46 H 1.08002 * 120.00317 * 180.02562 * 12 11 10 47 47 H 0.97005 * 119.99658 * 6.70001 * 15 13 4 48 48 H 1.08992 * 110.96190 * 328.34240 * 20 18 16 49 49 H 1.09006 * 109.85152 * 205.91548 * 20 18 16 50 50 H 0.97005 * 119.99315 * 180.02562 * 25 24 22 51 51 H 1.09007 * 110.41077 * 280.80353 * 30 21 20 52 52 H 1.09003 * 110.50795 * 158.42566 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6439 1.2954 6 6 1.6359 -2.1957 1.1875 7 6 2.3753 -2.8725 0.0623 8 6 1.7693 -3.0233 -1.1710 9 6 2.4495 -3.6399 -2.2044 10 6 3.7318 -4.1148 -2.0018 11 6 4.3356 -3.9692 -0.7668 12 6 3.6574 -3.3479 0.2651 13 6 1.4386 -0.0865 2.4765 14 8 0.5638 -0.6608 3.0895 15 7 1.8728 1.1195 2.8930 16 6 1.3960 1.6710 4.1637 17 1 0.8224 0.9853 4.7874 18 6 0.9949 3.1472 4.1854 19 1 1.0081 3.7215 3.2591 20 6 0.0835 3.6006 5.3905 21 7 1.0370 3.9539 6.4680 22 6 0.9655 5.0063 7.3411 23 1 0.3954 5.8860 7.0811 24 6 1.6258 4.9426 8.5605 25 7 2.3895 3.9083 8.8420 26 14 1.4305 6.3248 9.8017 27 1 -0.0008 6.4561 10.1752 28 1 2.2328 6.0190 11.0134 29 1 1.9048 7.5984 9.2032 30 6 2.0852 2.9103 6.3865 31 6 2.2947 2.6857 4.8734 32 1 3.2765 2.9159 4.4596 33 1 -0.3633 0.5912 0.8405 34 1 -0.3633 0.4324 -0.9324 35 1 -0.3634 -1.0235 0.0917 36 1 1.8933 -0.5138 -0.8900 37 1 3.1290 1.4429 0.0481 38 1 1.7165 1.9423 -0.9131 39 1 1.6380 1.9700 0.8651 40 1 1.8865 -2.6809 2.1308 41 1 0.5624 -2.2711 1.0141 42 1 0.7661 -2.6556 -1.3282 43 1 1.9775 -3.7539 -3.1692 44 1 4.2618 -4.5998 -2.8082 45 1 5.3373 -4.3406 -0.6083 46 1 4.1293 -3.2338 1.2299 47 1 2.5011 1.6223 2.3514 48 1 -0.5698 2.7896 5.7120 49 1 -0.5045 4.4721 5.1025 50 1 2.8506 3.8636 9.6943 51 1 1.7445 1.9912 6.8635 52 1 3.0080 3.2588 6.8504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114831592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:20 Heat of formation + Delta-G solvation = 19.403719 kcal Electronic energy + Delta-G solvation = -29733.045898 eV Core-core repulsion = 25890.922489 eV Total energy + Delta-G solvation = -3842.123409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.64154 -40.34677 -39.66594 -37.18371 -36.12085 -34.36754 -33.43243 -32.10567 -31.70407 -29.95287 -28.79807 -28.16925 -27.57578 -25.73624 -23.71971 -23.40465 -22.42706 -22.03175 -21.86943 -20.90095 -20.23480 -18.85614 -18.00159 -17.63692 -17.35981 -16.82025 -16.75090 -16.09465 -15.94574 -15.69488 -15.42730 -15.02128 -14.71250 -14.66019 -14.61418 -14.50924 -14.14236 -13.86268 -13.65084 -13.50642 -13.29724 -13.20736 -13.04977 -12.86921 -12.82665 -12.69415 -12.62352 -12.17488 -12.00948 -11.96567 -11.89543 -11.86242 -11.83906 -11.70949 -11.65438 -11.45829 -10.92670 -10.75903 -10.61853 -9.74318 -9.67044 -9.53822 -8.85227 -7.95339 -5.36318 0.49089 0.56695 1.45661 1.49374 1.55827 1.56389 2.00122 2.46790 2.86665 2.94001 3.26613 3.50599 3.63836 3.73396 3.80722 3.85135 3.95427 4.03697 4.07813 4.08472 4.17619 4.23306 4.30468 4.37329 4.39575 4.48595 4.52634 4.57781 4.71230 4.73564 4.77651 4.83541 4.90135 4.94739 4.97060 4.97665 5.03285 5.06716 5.17995 5.24828 5.26145 5.26681 5.40221 5.42341 5.45241 5.48322 5.55794 5.63338 5.65074 5.70169 5.79480 6.18445 6.18835 6.53238 6.98995 7.23902 7.64278 8.46507 9.18537 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002002 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.938250 B =13981.938440 C =14441.828980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 C -0.166 4.166 4 C -0.087 4.087 5 H 0.112 0.888 6 C -0.061 4.061 7 C -0.084 4.084 8 C -0.122 4.122 9 C -0.124 4.124 10 C -0.131 4.131 11 C -0.126 4.126 12 C -0.130 4.130 13 C 0.523 3.477 14 O -0.578 6.578 15 N -0.687 5.687 16 C 0.114 3.886 17 H 0.102 0.898 18 C -0.167 4.167 19 H 0.138 0.862 20 C 0.150 3.850 21 N -0.616 5.616 22 C -0.247 4.247 23 H 0.080 0.920 24 C -0.057 4.057 25 N -0.943 5.943 26 Si 0.981 3.019 27 H -0.277 1.277 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.191 3.809 31 C -0.181 4.181 32 H 0.124 0.876 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.124 0.876 47 H 0.415 0.585 48 H 0.020 0.980 49 H 0.060 0.940 50 H 0.252 0.748 51 H -0.006 1.006 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -13.173 -27.295 30.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.097 4.097 3 C -0.224 4.224 4 C -0.109 4.109 5 H 0.130 0.870 6 C -0.099 4.099 7 C -0.084 4.084 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.149 4.149 11 C -0.144 4.144 12 C -0.148 4.148 13 C 0.312 3.688 14 O -0.457 6.457 15 N -0.339 5.339 16 C 0.007 3.993 17 H 0.120 0.880 18 C -0.188 4.188 19 H 0.155 0.845 20 C 0.024 3.976 21 N -0.340 5.340 22 C -0.376 4.376 23 H 0.098 0.902 24 C -0.251 4.251 25 N -0.590 5.590 26 Si 0.808 3.192 27 H -0.203 1.203 28 H -0.219 1.219 29 H -0.198 1.198 30 C 0.065 3.935 31 C -0.202 4.202 32 H 0.142 0.858 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.142 0.858 47 H 0.254 0.746 48 H 0.038 0.962 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.012 0.988 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.159 -13.491 -26.610 30.001 hybrid contribution 0.189 0.774 1.201 1.441 sum 3.348 -12.717 -25.409 28.611 Atomic orbital electron populations 1.21952 0.95323 1.01944 1.01758 1.21079 0.95808 0.96556 0.96219 1.22166 1.02096 0.95164 1.02929 1.21447 1.02137 0.95235 0.92041 0.87023 1.20379 1.00420 0.92374 0.96699 1.19799 0.94787 0.98862 0.94917 1.21247 1.00485 0.99633 0.92585 1.21426 0.95160 0.98038 0.99578 1.21455 0.95677 1.00068 0.97703 1.21395 1.00645 0.99003 0.93310 1.21243 0.94600 0.99096 0.99842 1.21159 0.81479 0.80246 0.85916 1.90691 1.32216 1.63906 1.58928 1.45601 1.47492 1.19765 1.21009 1.21411 1.00307 0.90286 0.87341 0.88004 1.24974 0.97921 0.96271 0.99622 0.84482 1.21832 0.91284 0.97389 0.87106 1.45329 1.22614 1.29134 1.36924 1.19289 1.29392 0.94112 0.94792 0.90222 1.25954 0.99971 1.00373 0.98835 1.70069 1.33409 1.32005 1.23501 0.85131 0.77674 0.78399 0.77960 1.20253 1.21904 1.19767 1.20801 0.93318 0.89657 0.89769 1.24323 0.95959 1.03686 0.96204 0.85831 0.94776 0.90892 0.92338 0.88243 0.90794 0.90845 0.92889 0.91798 0.90484 0.85276 0.84313 0.84379 0.84674 0.85837 0.74552 0.96201 0.92142 0.93941 0.98777 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.63 71.98 0.62 -1.99 16 2 C -0.08 -1.13 2.53 -10.79 -0.03 -1.15 16 3 C -0.17 -2.10 8.15 71.98 0.59 -1.52 16 4 C -0.09 -1.58 1.99 -11.54 -0.02 -1.60 16 5 H 0.11 1.67 8.13 -2.38 -0.02 1.65 16 6 C -0.06 -1.17 4.03 29.85 0.12 -1.05 16 7 C -0.08 -1.36 4.59 -19.86 -0.09 -1.45 16 8 C -0.12 -1.71 8.36 22.27 0.19 -1.52 16 9 C -0.12 -1.50 10.05 22.27 0.22 -1.27 16 10 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 11 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 12 C -0.13 -2.01 9.73 22.27 0.22 -1.79 16 13 C 0.52 13.81 5.40 87.66 0.47 14.29 16 14 O -0.58 -20.50 15.68 -3.03 -0.05 -20.55 16 15 N -0.69 -17.33 4.64 -442.55 -2.05 -19.38 16 16 C 0.11 3.81 5.91 44.99 0.27 4.08 16 17 H 0.10 4.09 7.45 -2.39 -0.02 4.07 16 18 C -0.17 -5.73 7.34 -8.73 -0.06 -5.80 16 19 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 20 C 0.15 6.44 7.10 87.74 0.62 7.07 16 21 N -0.62 -32.47 3.38 -681.30 -2.30 -34.77 16 22 C -0.25 -13.99 10.33 84.04 0.87 -13.12 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 24 C -0.06 -3.25 5.48 84.86 0.47 -2.78 16 25 N -0.94 -57.05 10.85 21.65 0.24 -56.81 16 26 Si 0.98 45.47 29.56 68.60 2.03 47.50 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 30 C 0.19 9.56 5.66 86.54 0.49 10.05 16 31 C -0.18 -6.73 6.97 -9.94 -0.07 -6.80 16 32 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 33 H 0.03 0.76 7.28 -2.39 -0.02 0.74 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 1.03 6.21 -2.39 -0.01 1.01 16 36 H 0.10 1.23 6.35 -2.39 -0.02 1.22 16 37 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.81 5.61 -2.38 -0.01 0.80 16 40 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 41 H 0.08 1.60 6.06 -2.38 -0.01 1.58 16 42 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 47 H 0.41 7.93 6.56 -92.70 -0.61 7.32 16 48 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 50 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 51 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 52 H 0.06 3.27 6.64 -2.39 -0.02 3.26 16 Total: -1.00 -71.39 407.69 3.47 -67.91 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.30 Total: 25.24 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 5.31 Total: -9.14 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.12 Total: -110.97 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.39 3.47 -67.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114831592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.316 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds