Wall clock time and date at job start Wed Apr 1 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 H 1.08998 * 109.47160 * 303.14829 * 3 2 1 5 5 C 1.53004 * 109.47187 * 63.14483 * 3 2 1 6 6 C 1.50701 * 109.47453 * 187.49446 * 5 3 2 7 7 C 1.38260 * 119.99569 * 261.81107 * 6 5 3 8 8 C 1.38214 * 119.99449 * 179.74487 * 7 6 5 9 9 C 1.38257 * 120.00273 * 0.52447 * 8 7 6 10 10 C 1.38220 * 119.99584 * 359.75088 * 9 8 7 11 11 C 1.50706 * 119.99643 * 180.02562 * 10 9 8 12 12 C 1.38211 * 119.99995 * 82.07652 * 6 5 3 13 13 C 1.50703 * 109.47515 * 183.14574 * 3 2 1 14 14 O 1.21275 * 119.99810 * 239.99999 * 13 3 2 15 15 N 1.34773 * 119.99531 * 60.00110 * 13 3 2 16 16 C 1.46499 * 119.99718 * 180.02562 * 15 13 3 17 17 H 1.08998 * 115.51766 * 9.41387 * 16 15 13 18 18 C 1.52997 * 117.44215 * 224.00069 * 16 15 13 19 19 H 1.09004 * 119.54425 * 4.11896 * 18 16 15 20 20 C 1.54392 * 118.12278 * 160.80793 * 18 16 15 21 21 N 1.48146 * 104.61939 * 87.19260 * 20 18 16 22 22 C 1.36936 * 127.84409 * 140.41579 * 21 20 18 23 23 H 1.07999 * 119.99606 * 343.61971 * 22 21 20 24 24 C 1.38812 * 120.00383 * 163.62041 * 22 21 20 25 25 N 1.31616 * 119.99722 * 351.43674 * 24 22 21 26 26 Si 1.86794 * 119.99916 * 171.43342 * 24 22 21 27 27 H 1.48508 * 109.47076 * 94.98035 * 26 24 22 28 28 H 1.48495 * 109.47286 * 214.98067 * 26 24 22 29 29 H 1.48506 * 109.47555 * 334.98225 * 26 24 22 30 30 C 1.51698 * 104.54520 * 320.18713 * 21 20 18 31 31 C 1.53002 * 117.44526 * 154.83148 * 16 15 13 32 32 H 1.09003 * 119.53805 * 355.88364 * 31 16 15 33 33 H 1.09000 * 109.47289 * 293.76375 * 1 2 3 34 34 H 1.09001 * 109.47432 * 173.76597 * 1 2 3 35 35 H 1.09004 * 109.47372 * 53.76056 * 1 2 3 36 36 H 1.09006 * 109.47125 * 119.99671 * 2 1 3 37 37 H 1.09000 * 109.47541 * 240.00169 * 2 1 3 38 38 H 1.09000 * 109.46963 * 307.49888 * 5 3 2 39 39 H 1.08998 * 109.46679 * 67.49297 * 5 3 2 40 40 H 1.07994 * 120.00428 * 359.97438 * 7 6 5 41 41 H 1.07998 * 120.00039 * 180.29233 * 8 7 6 42 42 H 1.08003 * 120.00320 * 179.76960 * 9 8 7 43 43 H 1.09002 * 109.46798 * 269.97403 * 11 10 9 44 44 H 1.08994 * 109.47361 * 29.97969 * 11 10 9 45 45 H 1.09000 * 109.46719 * 149.97491 * 11 10 9 46 46 H 1.08000 * 119.99775 * 0.02562 * 12 6 5 47 47 H 0.96996 * 120.00568 * 359.97438 * 15 13 3 48 48 H 1.09002 * 110.40932 * 205.97601 * 20 18 16 49 49 H 1.09003 * 110.40750 * 328.40515 * 20 18 16 50 50 H 0.97003 * 119.99699 * 180.02562 * 25 24 22 51 51 H 1.08992 * 111.96549 * 281.12897 * 30 21 20 52 52 H 1.09001 * 110.48794 * 157.55462 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6313 1.9723 -0.8604 5 6 1.5956 2.1406 1.2870 6 6 1.9366 3.6063 1.2069 7 6 3.0857 4.0826 1.8104 8 6 3.4011 5.4260 1.7325 9 6 2.5620 6.2953 1.0604 10 6 1.4103 5.8200 0.4619 11 6 0.4960 6.7674 -0.2712 12 6 1.0978 4.4752 0.5349 13 6 3.5450 1.4432 -0.0780 14 8 4.1978 1.9519 0.8085 15 7 4.1653 0.8786 -1.1328 16 6 5.6283 0.8788 -1.2084 17 1 6.1450 1.2076 -0.3067 18 6 6.2648 1.2317 -2.5542 19 1 5.6293 1.5347 -3.3864 20 6 7.7428 1.6780 -2.5655 21 7 8.5135 0.4165 -2.6618 22 6 9.6442 0.1768 -3.3961 23 1 9.9257 0.8526 -4.1901 24 6 10.4285 -0.9347 -3.1201 25 7 10.1843 -1.6634 -2.0516 26 14 11.8303 -1.3963 -4.2651 27 1 13.0982 -0.8154 -3.7546 28 1 11.9528 -2.8749 -4.3267 29 1 11.5547 -0.8654 -5.6243 30 6 7.7733 -0.5521 -1.7590 31 6 6.2917 -0.2211 -2.0398 32 1 5.6760 -1.0006 -2.4887 33 1 -0.3634 0.4141 0.9405 34 1 -0.3634 -1.0216 -0.1116 35 1 -0.3634 0.6075 -0.8289 36 1 1.8932 -0.5138 0.8901 37 1 1.8933 -0.5138 -0.8900 38 1 0.5189 2.0241 1.4103 39 1 2.1092 1.6940 2.1384 40 1 3.7387 3.4045 2.3395 41 1 4.3011 5.7974 2.1999 42 1 2.8066 7.3457 1.0027 43 1 -0.2462 7.1648 0.4212 44 1 1.0807 7.5878 -0.6872 45 1 -0.0079 6.2349 -1.0778 46 1 0.1977 4.1038 0.0675 47 1 3.6431 0.4714 -1.8416 48 1 7.9418 2.3119 -3.4296 49 1 7.9881 2.2039 -1.6427 50 1 10.7327 -2.4399 -1.8585 51 1 8.0065 -0.3883 -0.7070 52 1 7.9930 -1.5815 -2.0422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114935034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:30 Heat of formation + Delta-G solvation = 30.350032 kcal Electronic energy + Delta-G solvation = -29655.457665 eV Core-core repulsion = 25813.808924 eV Total energy + Delta-G solvation = -3841.648741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.36631 -39.23032 -38.26056 -35.81109 -34.40447 -33.13553 -32.45860 -31.75905 -30.20129 -28.73543 -27.13207 -26.98233 -25.97401 -25.10286 -22.49452 -22.17964 -21.37040 -20.72453 -20.41303 -19.56417 -19.18900 -17.21822 -16.85568 -16.66201 -16.13892 -15.53861 -15.32318 -14.75451 -14.59332 -14.50755 -14.25033 -13.95810 -13.70748 -13.45004 -13.18374 -13.14227 -12.86426 -12.79048 -12.71751 -12.43801 -12.17260 -12.15605 -11.99834 -11.65133 -11.49979 -11.44930 -11.39242 -11.01289 -10.98850 -10.85907 -10.83123 -10.78138 -10.41861 -10.17998 -10.13281 -9.69977 -9.58157 -9.17692 -8.78269 -8.73358 -8.49465 -8.27689 -6.85461 -5.78690 -3.11938 1.35977 1.43582 2.70866 3.18222 3.38864 3.44259 3.46262 3.75251 4.32449 4.46237 4.50084 4.52086 4.60738 4.75694 4.82487 4.92726 5.06100 5.13210 5.15752 5.18127 5.23703 5.25257 5.36574 5.38977 5.40168 5.43077 5.50539 5.57298 5.58320 5.65170 5.69250 5.73094 5.73449 5.81230 5.87956 5.91568 5.96867 6.10446 6.16561 6.17844 6.27297 6.52899 6.54919 6.59333 6.70883 6.72707 6.84908 6.91258 7.07118 7.31339 7.51840 7.64056 7.70500 8.15854 8.37152 9.07288 9.73749 10.51286 11.36663 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002347 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.287864 B =11927.458915 C =13027.903135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.101 4.101 4 H 0.096 0.904 5 C -0.062 4.062 6 C -0.083 4.083 7 C -0.083 4.083 8 C -0.123 4.123 9 C -0.124 4.124 10 C -0.099 4.099 11 C -0.111 4.111 12 C -0.120 4.120 13 C 0.518 3.482 14 O -0.530 6.530 15 N -0.698 5.698 16 C 0.098 3.902 17 H 0.131 0.869 18 C -0.183 4.183 19 H 0.101 0.899 20 C 0.159 3.841 21 N -0.598 5.598 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.916 5.916 26 Si 0.912 3.088 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.187 3.813 31 C -0.179 4.179 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.050 0.950 49 H 0.025 0.975 50 H 0.254 0.746 51 H 0.032 0.968 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.378 9.230 5.398 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.123 4.123 4 H 0.114 0.886 5 C -0.100 4.100 6 C -0.083 4.083 7 C -0.101 4.101 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.138 4.138 13 C 0.305 3.695 14 O -0.406 6.406 15 N -0.347 5.347 16 C -0.008 4.008 17 H 0.148 0.852 18 C -0.205 4.205 19 H 0.119 0.881 20 C 0.032 3.968 21 N -0.323 5.323 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.563 5.563 26 Si 0.742 3.258 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.206 1.206 30 C 0.062 3.938 31 C -0.200 4.200 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.230 0.770 48 H 0.069 0.931 49 H 0.043 0.957 50 H 0.064 0.936 51 H 0.050 0.950 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.677 9.437 5.999 26.185 hybrid contribution 0.525 -0.483 -1.149 1.353 sum -23.152 8.954 4.849 25.293 Atomic orbital electron populations 1.21830 0.95010 1.02010 1.02144 1.21531 0.96570 0.94231 1.03166 1.21422 0.92370 0.97998 1.00493 0.88615 1.20488 1.01187 0.91260 0.97021 1.19767 0.95302 0.95027 0.98174 1.21297 0.95644 0.94956 0.98194 1.21191 0.99365 0.93898 0.99676 1.20993 0.94834 0.99416 0.98976 1.19804 0.96245 0.94411 0.99405 1.20748 0.98417 0.98221 0.99390 1.20834 0.99623 0.92762 1.00630 1.20525 0.89937 0.77445 0.81617 1.90654 1.67332 1.44282 1.38349 1.45426 1.06533 1.58944 1.23785 1.21836 0.79074 1.03418 0.96484 0.85184 1.24344 0.99079 1.00270 0.96779 0.88097 1.21053 0.87269 0.90004 0.98477 1.46025 1.28117 1.05397 1.52731 1.19007 0.98326 1.08713 1.09211 0.90617 1.24891 0.98569 0.99496 0.97433 1.69891 1.41330 1.19279 1.25793 0.86110 0.82031 0.77569 0.80089 1.21523 1.21605 1.20561 1.21640 0.82391 0.96650 0.93094 1.24554 1.00490 0.91611 1.03334 0.88183 0.92224 0.92347 0.92496 0.91020 0.91267 0.90216 0.90095 0.84853 0.86363 0.86652 0.91547 0.91785 0.91827 0.86653 0.76987 0.93105 0.95693 0.93597 0.95010 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.47 37.15 0.35 -0.54 16 2 C -0.12 -0.88 5.35 -26.74 -0.14 -1.03 16 3 C -0.10 -0.94 2.19 -91.77 -0.20 -1.15 16 4 H 0.10 0.81 8.13 -51.93 -0.42 0.39 16 5 C -0.06 -0.59 4.43 -27.88 -0.12 -0.71 16 6 C -0.08 -0.94 4.72 -104.62 -0.49 -1.44 16 7 C -0.08 -1.08 8.01 -39.58 -0.32 -1.40 16 8 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 9 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 10 C -0.10 -1.02 5.88 -104.62 -0.62 -1.64 16 11 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 12 C -0.12 -1.25 9.39 -39.59 -0.37 -1.62 16 13 C 0.52 6.88 6.92 -10.99 -0.08 6.81 16 14 O -0.53 -8.76 12.02 5.56 0.07 -8.69 16 15 N -0.70 -9.21 5.44 -53.81 -0.29 -9.50 16 16 C 0.10 1.65 5.97 -67.93 -0.41 1.24 16 17 H 0.13 2.51 7.40 -51.93 -0.38 2.12 16 18 C -0.18 -3.32 7.05 -89.29 -0.63 -3.94 16 19 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 20 C 0.16 3.42 7.05 -2.41 -0.02 3.41 16 21 N -0.60 -15.48 3.45 -165.82 -0.57 -16.05 16 22 C -0.22 -6.30 10.36 -15.06 -0.16 -6.45 16 23 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 24 C -0.01 -0.20 5.42 -17.43 -0.09 -0.29 16 25 N -0.92 -26.95 10.88 55.49 0.60 -26.35 16 26 Si 0.91 22.03 29.56 -169.99 -5.03 17.00 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 C 0.19 4.49 5.89 -0.37 0.00 4.49 16 31 C -0.18 -3.36 6.96 -89.29 -0.62 -3.98 16 32 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.06 0.33 6.67 -51.93 -0.35 -0.02 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.49 7.48 -51.93 -0.39 0.11 16 38 H 0.08 0.59 6.30 -51.93 -0.33 0.26 16 39 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 40 H 0.13 1.88 6.67 -52.49 -0.35 1.53 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 45 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.40 4.18 8.20 -40.82 -0.33 3.85 16 48 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 51 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.09 2.37 6.65 -51.93 -0.35 2.03 16 LS Contribution 412.52 15.07 6.22 6.22 Total: -1.00 -32.11 412.52 -12.10 -44.21 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.76 Total: 5.54 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -4.34 Total: -12.37 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.26 Total: -51.90 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.11 -12.10 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114935034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.556 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds