Wall clock time and date at job start Wed Apr 1 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 H 1.08998 * 109.47160 * 303.14829 * 3 2 1 5 5 C 1.53004 * 109.47187 * 63.14483 * 3 2 1 6 6 C 1.50701 * 109.47453 * 187.49446 * 5 3 2 7 7 C 1.38260 * 119.99569 * 261.81107 * 6 5 3 8 8 C 1.38214 * 119.99449 * 179.74487 * 7 6 5 9 9 C 1.38257 * 120.00273 * 0.52447 * 8 7 6 10 10 C 1.38220 * 119.99584 * 359.75088 * 9 8 7 11 11 C 1.50706 * 119.99643 * 180.02562 * 10 9 8 12 12 C 1.38211 * 119.99995 * 82.07652 * 6 5 3 13 13 C 1.50703 * 109.47515 * 183.14574 * 3 2 1 14 14 O 1.21275 * 119.99810 * 239.99999 * 13 3 2 15 15 N 1.34773 * 119.99531 * 60.00110 * 13 3 2 16 16 C 1.46499 * 119.99718 * 180.02562 * 15 13 3 17 17 H 1.08998 * 115.51766 * 9.41387 * 16 15 13 18 18 C 1.52997 * 117.44215 * 224.00069 * 16 15 13 19 19 H 1.09004 * 119.54425 * 4.11896 * 18 16 15 20 20 C 1.54392 * 118.12278 * 160.80793 * 18 16 15 21 21 N 1.48146 * 104.61939 * 87.19260 * 20 18 16 22 22 C 1.36936 * 127.84409 * 140.41579 * 21 20 18 23 23 H 1.07999 * 119.99606 * 343.61971 * 22 21 20 24 24 C 1.38812 * 120.00383 * 163.62041 * 22 21 20 25 25 N 1.31616 * 119.99722 * 351.43674 * 24 22 21 26 26 Si 1.86794 * 119.99916 * 171.43342 * 24 22 21 27 27 H 1.48508 * 109.47076 * 94.98035 * 26 24 22 28 28 H 1.48495 * 109.47286 * 214.98067 * 26 24 22 29 29 H 1.48506 * 109.47555 * 334.98225 * 26 24 22 30 30 C 1.51698 * 104.54520 * 320.18713 * 21 20 18 31 31 C 1.53002 * 117.44526 * 154.83148 * 16 15 13 32 32 H 1.09003 * 119.53805 * 355.88364 * 31 16 15 33 33 H 1.09000 * 109.47289 * 293.76375 * 1 2 3 34 34 H 1.09001 * 109.47432 * 173.76597 * 1 2 3 35 35 H 1.09004 * 109.47372 * 53.76056 * 1 2 3 36 36 H 1.09006 * 109.47125 * 119.99671 * 2 1 3 37 37 H 1.09000 * 109.47541 * 240.00169 * 2 1 3 38 38 H 1.09000 * 109.46963 * 307.49888 * 5 3 2 39 39 H 1.08998 * 109.46679 * 67.49297 * 5 3 2 40 40 H 1.07994 * 120.00428 * 359.97438 * 7 6 5 41 41 H 1.07998 * 120.00039 * 180.29233 * 8 7 6 42 42 H 1.08003 * 120.00320 * 179.76960 * 9 8 7 43 43 H 1.09002 * 109.46798 * 269.97403 * 11 10 9 44 44 H 1.08994 * 109.47361 * 29.97969 * 11 10 9 45 45 H 1.09000 * 109.46719 * 149.97491 * 11 10 9 46 46 H 1.08000 * 119.99775 * 0.02562 * 12 6 5 47 47 H 0.96996 * 120.00568 * 359.97438 * 15 13 3 48 48 H 1.09002 * 110.40932 * 205.97601 * 20 18 16 49 49 H 1.09003 * 110.40750 * 328.40515 * 20 18 16 50 50 H 0.97003 * 119.99699 * 180.02562 * 25 24 22 51 51 H 1.08992 * 111.96549 * 281.12897 * 30 21 20 52 52 H 1.09001 * 110.48794 * 157.55462 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6313 1.9723 -0.8604 5 6 1.5956 2.1406 1.2870 6 6 1.9366 3.6063 1.2069 7 6 3.0857 4.0826 1.8104 8 6 3.4011 5.4260 1.7325 9 6 2.5620 6.2953 1.0604 10 6 1.4103 5.8200 0.4619 11 6 0.4960 6.7674 -0.2712 12 6 1.0978 4.4752 0.5349 13 6 3.5450 1.4432 -0.0780 14 8 4.1978 1.9519 0.8085 15 7 4.1653 0.8786 -1.1328 16 6 5.6283 0.8788 -1.2084 17 1 6.1450 1.2076 -0.3067 18 6 6.2648 1.2317 -2.5542 19 1 5.6293 1.5347 -3.3864 20 6 7.7428 1.6780 -2.5655 21 7 8.5135 0.4165 -2.6618 22 6 9.6442 0.1768 -3.3961 23 1 9.9257 0.8526 -4.1901 24 6 10.4285 -0.9347 -3.1201 25 7 10.1843 -1.6634 -2.0516 26 14 11.8303 -1.3963 -4.2651 27 1 13.0982 -0.8154 -3.7546 28 1 11.9528 -2.8749 -4.3267 29 1 11.5547 -0.8654 -5.6243 30 6 7.7733 -0.5521 -1.7590 31 6 6.2917 -0.2211 -2.0398 32 1 5.6760 -1.0006 -2.4887 33 1 -0.3634 0.4141 0.9405 34 1 -0.3634 -1.0216 -0.1116 35 1 -0.3634 0.6075 -0.8289 36 1 1.8932 -0.5138 0.8901 37 1 1.8933 -0.5138 -0.8900 38 1 0.5189 2.0241 1.4103 39 1 2.1092 1.6940 2.1384 40 1 3.7387 3.4045 2.3395 41 1 4.3011 5.7974 2.1999 42 1 2.8066 7.3457 1.0027 43 1 -0.2462 7.1648 0.4212 44 1 1.0807 7.5878 -0.6872 45 1 -0.0079 6.2349 -1.0778 46 1 0.1977 4.1038 0.0675 47 1 3.6431 0.4714 -1.8416 48 1 7.9418 2.3119 -3.4296 49 1 7.9881 2.2039 -1.6427 50 1 10.7327 -2.4399 -1.8585 51 1 8.0065 -0.3883 -0.7070 52 1 7.9930 -1.5815 -2.0422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114935034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:29 Heat of formation + Delta-G solvation = 13.612748 kcal Electronic energy + Delta-G solvation = -29656.183449 eV Core-core repulsion = 25813.808924 eV Total energy + Delta-G solvation = -3842.374524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.41674 -40.35506 -39.56556 -36.63913 -35.97495 -34.39822 -33.65404 -32.55697 -31.98575 -29.47903 -28.93144 -27.79811 -27.54514 -26.19019 -23.75567 -23.00128 -22.58036 -21.94920 -21.61277 -20.82178 -20.55155 -18.86829 -18.19276 -17.74421 -17.29564 -16.72165 -16.33761 -16.16746 -15.73059 -15.53275 -15.32053 -15.04393 -14.82823 -14.63782 -14.63082 -14.23878 -13.93566 -13.71045 -13.64374 -13.41951 -13.30872 -13.20540 -13.03858 -12.87990 -12.79382 -12.74053 -12.70226 -12.36588 -12.14725 -12.07796 -12.04067 -11.84299 -11.67237 -11.63951 -11.60084 -11.50942 -10.88968 -10.75936 -10.60280 -9.66653 -9.61038 -9.31768 -8.93745 -7.92936 -5.29005 0.51940 0.58261 1.45859 1.47199 1.57298 1.64220 2.03884 2.47854 2.85828 2.91358 3.28420 3.50648 3.66571 3.75842 3.83610 3.91364 3.92642 4.04878 4.09499 4.12531 4.23480 4.34374 4.36910 4.41536 4.49694 4.51823 4.56685 4.63900 4.70929 4.79346 4.83658 4.88564 4.90966 4.92462 4.94744 4.95914 5.07174 5.10026 5.24182 5.25652 5.26885 5.36218 5.37986 5.39422 5.44189 5.51741 5.56004 5.62034 5.70495 5.75844 5.87866 6.10913 6.24191 6.59850 6.93987 7.33264 7.63334 8.43905 9.22038 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.002347 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.287864 B =11927.458915 C =13027.903135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.087 4.087 4 H 0.117 0.883 5 C -0.059 4.059 6 C -0.089 4.089 7 C -0.109 4.109 8 C -0.142 4.142 9 C -0.136 4.136 10 C -0.102 4.102 11 C -0.109 4.109 12 C -0.122 4.122 13 C 0.511 3.489 14 O -0.567 6.567 15 N -0.686 5.686 16 C 0.121 3.879 17 H 0.101 0.899 18 C -0.169 4.169 19 H 0.133 0.867 20 C 0.152 3.848 21 N -0.622 5.622 22 C -0.240 4.240 23 H 0.081 0.919 24 C -0.064 4.064 25 N -0.949 5.949 26 Si 0.982 3.018 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.266 1.266 30 C 0.189 3.811 31 C -0.176 4.176 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.145 0.855 47 H 0.415 0.585 48 H 0.061 0.939 49 H 0.013 0.987 50 H 0.250 0.750 51 H 0.003 0.997 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.782 9.888 3.224 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.109 4.109 4 H 0.135 0.865 5 C -0.097 4.097 6 C -0.089 4.089 7 C -0.128 4.128 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.102 4.102 11 C -0.166 4.166 12 C -0.139 4.139 13 C 0.299 3.701 14 O -0.445 6.445 15 N -0.337 5.337 16 C 0.013 3.987 17 H 0.119 0.881 18 C -0.190 4.190 19 H 0.151 0.849 20 C 0.026 3.974 21 N -0.347 5.347 22 C -0.368 4.368 23 H 0.099 0.901 24 C -0.258 4.258 25 N -0.597 5.597 26 Si 0.809 3.191 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.191 1.191 30 C 0.065 3.935 31 C -0.197 4.197 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.163 0.837 47 H 0.252 0.748 48 H 0.079 0.921 49 H 0.031 0.969 50 H 0.059 0.941 51 H 0.021 0.979 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.130 10.113 3.809 29.203 hybrid contribution 1.597 -0.601 -0.374 1.747 sum -25.533 9.512 3.435 27.463 Atomic orbital electron populations 1.21816 0.93198 1.02749 1.02904 1.21538 0.98037 0.92582 1.03043 1.21418 0.88767 0.99568 1.01099 0.86502 1.20525 1.02672 0.89989 0.96495 1.19991 0.94778 0.96266 0.97870 1.21250 0.96716 0.95055 0.99736 1.21336 1.00031 0.94110 1.00571 1.21239 0.95151 1.00035 0.98954 1.20231 0.96122 0.95203 0.98693 1.20796 0.98187 0.97854 0.99725 1.21155 1.00158 0.92570 1.00066 1.21406 0.91744 0.76252 0.80659 1.90674 1.68535 1.45632 1.39625 1.45266 1.04603 1.59156 1.24641 1.21317 0.81293 1.01276 0.94796 0.88086 1.24242 0.97377 0.98953 0.98401 0.84944 1.21171 0.89197 0.88761 0.98275 1.46349 1.28364 1.07360 1.52624 1.19408 0.99163 1.08802 1.09473 0.90115 1.25764 1.01320 0.99634 0.99047 1.70092 1.42429 1.19619 1.27567 0.85028 0.78613 0.76843 0.78599 1.21445 1.21767 1.19071 1.21376 0.85983 0.94920 0.91252 1.24237 0.97758 0.92811 1.04850 0.85629 0.91822 0.91814 0.91245 0.92225 0.90451 0.87277 0.91935 0.87315 0.86471 0.85154 0.90300 0.91341 0.90473 0.83742 0.74835 0.92056 0.96929 0.94096 0.97920 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.47 71.98 0.68 -0.50 16 2 C -0.11 -1.39 5.35 30.59 0.16 -1.22 16 3 C -0.09 -1.41 2.19 -11.54 -0.03 -1.43 16 4 H 0.12 1.47 8.13 -2.39 -0.02 1.45 16 5 C -0.06 -1.03 4.43 29.85 0.13 -0.90 16 6 C -0.09 -1.94 4.72 -19.87 -0.09 -2.03 16 7 C -0.11 -2.97 8.01 22.27 0.18 -2.80 16 8 C -0.14 -3.61 10.05 22.27 0.22 -3.39 16 9 C -0.14 -2.91 9.70 22.27 0.22 -2.69 16 10 C -0.10 -1.90 5.88 -19.86 -0.12 -2.02 16 11 C -0.11 -1.30 10.01 71.24 0.71 -0.59 16 12 C -0.12 -2.19 9.39 22.27 0.21 -1.98 16 13 C 0.51 13.04 6.92 87.66 0.61 13.65 16 14 O -0.57 -19.28 12.02 -3.02 -0.04 -19.32 16 15 N -0.69 -16.81 5.44 -442.55 -2.41 -19.21 16 16 C 0.12 4.02 5.97 44.99 0.27 4.29 16 17 H 0.10 4.06 7.40 -2.39 -0.02 4.04 16 18 C -0.17 -5.86 7.05 -9.93 -0.07 -5.93 16 19 H 0.13 3.85 8.14 -2.38 -0.02 3.83 16 20 C 0.15 6.59 7.05 86.54 0.61 7.20 16 21 N -0.62 -32.96 3.45 -678.53 -2.34 -35.30 16 22 C -0.24 -13.68 10.36 84.03 0.87 -12.81 16 23 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 24 C -0.06 -3.69 5.42 84.86 0.46 -3.23 16 25 N -0.95 -57.86 10.88 21.65 0.24 -57.62 16 26 Si 0.98 45.91 29.56 68.60 2.03 47.94 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 28 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 C 0.19 9.49 5.89 85.82 0.51 9.99 16 31 C -0.18 -6.51 6.96 -9.93 -0.07 -6.58 16 32 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 33 H 0.06 0.46 6.67 -2.39 -0.02 0.44 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 0.83 7.48 -2.39 -0.02 0.82 16 38 H 0.11 1.24 6.30 -2.39 -0.02 1.23 16 39 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 40 H 0.11 3.40 6.67 -2.91 -0.02 3.38 16 41 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 45 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.41 7.31 8.20 -92.71 -0.76 6.55 16 48 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 51 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 52 H 0.06 3.30 6.65 -2.39 -0.02 3.29 16 Total: -1.00 -73.63 412.52 3.09 -70.54 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.14 Total: 25.94 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.46 Total: -12.96 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.51 Total: -112.14 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.04 Total: -19.32 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.63 3.09 -70.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114935034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.148 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds