Wall clock time and date at job start Wed Apr 1 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 C 1.53002 * 109.46786 * 120.00127 * 2 1 3 5 5 C 1.52999 * 109.47316 * 65.82922 * 4 2 1 6 6 H 1.09001 * 109.47112 * 305.57905 * 5 4 2 7 7 C 1.50697 * 109.47118 * 65.57859 * 5 4 2 8 8 O 1.21282 * 119.99933 * 28.11222 * 7 5 4 9 9 N 1.34777 * 120.00259 * 208.11221 * 7 5 4 10 10 C 1.46501 * 120.00119 * 185.15939 * 9 7 5 11 11 H 1.09000 * 115.51309 * 9.41090 * 10 9 7 12 12 C 1.53000 * 117.43939 * 224.00445 * 10 9 7 13 13 H 1.08996 * 119.54419 * 4.11003 * 12 10 9 14 14 C 1.54395 * 118.12044 * 160.80852 * 12 10 9 15 15 N 1.48149 * 104.61538 * 87.18685 * 14 12 10 16 16 C 1.36939 * 127.83554 * 140.41398 * 15 14 12 17 17 H 1.08002 * 120.00153 * 342.44298 * 16 15 14 18 18 C 1.38811 * 120.00158 * 162.44089 * 16 15 14 19 19 N 1.31622 * 119.99727 * 3.06077 * 18 16 15 20 20 Si 1.86796 * 120.00263 * 183.05407 * 18 16 15 21 21 H 1.48500 * 109.46943 * 90.00218 * 20 18 16 22 22 H 1.48501 * 109.47307 * 210.00499 * 20 18 16 23 23 H 1.48500 * 109.46923 * 330.00317 * 20 18 16 24 24 C 1.51689 * 104.54823 * 320.18706 * 15 14 12 25 25 C 1.52997 * 117.44307 * 154.83439 * 10 9 7 26 26 H 1.08995 * 119.53770 * 355.87510 * 25 10 9 27 27 C 1.50695 * 109.47163 * 185.57989 * 5 4 2 28 28 C 1.38239 * 120.00175 * 119.99917 * 27 5 4 29 29 C 1.38232 * 120.00152 * 180.27675 * 28 27 5 30 30 C 1.38242 * 120.00017 * 359.48991 * 29 28 27 31 31 C 1.38237 * 119.99941 * 0.51318 * 30 29 28 32 32 C 1.38236 * 119.99664 * 359.74119 * 31 30 29 33 33 H 1.08991 * 109.47292 * 300.00113 * 1 2 3 34 34 H 1.09002 * 109.46616 * 59.99831 * 1 2 3 35 35 H 1.08996 * 109.47264 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47589 * 239.99570 * 2 1 3 37 37 H 1.09006 * 109.46837 * 179.97438 * 3 2 1 38 38 H 1.08997 * 109.47097 * 299.99925 * 3 2 1 39 39 H 1.09001 * 109.46652 * 60.00069 * 3 2 1 40 40 H 1.09007 * 109.47025 * 305.82740 * 4 2 1 41 41 H 1.09004 * 109.47268 * 185.83072 * 4 2 1 42 42 H 0.96997 * 119.99413 * 5.15403 * 9 7 5 43 43 H 1.09000 * 110.40421 * 205.96635 * 14 12 10 44 44 H 1.08993 * 110.40408 * 328.40065 * 14 12 10 45 45 H 0.97001 * 119.99952 * 179.97438 * 19 18 16 46 46 H 1.08997 * 111.96043 * 281.12911 * 24 15 14 47 47 H 1.09007 * 110.48859 * 157.55662 * 24 15 14 48 48 H 1.07995 * 119.99866 * 0.02562 * 28 27 5 49 49 H 1.08002 * 120.00129 * 179.72960 * 29 28 27 50 50 H 1.07998 * 119.99886 * 180.23473 * 30 29 28 51 51 H 1.07999 * 120.00262 * 179.72310 * 31 30 29 52 52 H 1.08004 * 119.99985 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6531 -2.1999 1.1782 6 1 0.5774 -2.2870 1.0248 7 6 2.3786 -2.8543 0.0309 8 8 3.4524 -2.4232 -0.3325 9 7 1.8344 -3.9188 -0.5913 10 6 2.5885 -4.6246 -1.6302 11 1 3.6339 -4.3330 -1.7315 12 6 1.8379 -5.0126 -2.9057 13 1 0.8017 -4.7004 -3.0355 14 6 2.6663 -5.3339 -4.1684 15 7 2.9811 -6.7769 -4.0517 16 6 2.9966 -7.7165 -5.0478 17 1 2.4982 -7.5180 -5.9852 18 6 3.6529 -8.9240 -4.8528 19 7 4.2087 -9.1906 -3.6898 20 14 3.7472 -10.1706 -6.2407 21 1 4.9687 -9.9216 -7.0475 22 1 3.8004 -11.5414 -5.6720 23 1 2.5473 -10.0399 -7.1058 24 6 3.2890 -6.9819 -2.5806 25 6 2.2384 -6.0926 -1.8814 26 1 1.5006 -6.5850 -1.2480 27 6 2.0335 -2.8812 2.4673 28 6 1.0618 -3.4866 3.2421 29 6 1.4100 -4.1066 4.4275 30 6 2.7314 -4.1305 4.8330 31 6 3.7031 -3.5250 4.0583 32 6 3.3541 -2.9004 2.8755 33 1 -0.3633 0.5138 0.8899 34 1 -0.3632 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8934 -0.5139 -0.8899 37 1 3.1301 1.4424 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.6767 1.9563 0.8900 40 1 1.5938 -0.2712 2.1362 41 1 3.1250 -0.6318 1.3031 42 1 0.9434 -4.2176 -0.3511 43 1 2.0787 -5.1446 -5.0667 44 1 3.5831 -4.7447 -4.1815 45 1 4.6670 -10.0345 -3.5534 46 1 4.2962 -6.6528 -2.3252 47 1 3.1478 -8.0266 -2.3033 48 1 0.0301 -3.4716 2.9233 49 1 0.6502 -4.5758 5.0350 50 1 3.0039 -4.6182 5.7572 51 1 4.7348 -3.5398 4.3772 52 1 4.1132 -2.4270 2.2704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114939862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:13 Heat of formation + Delta-G solvation = 31.189939 kcal Electronic energy + Delta-G solvation = -29899.896691 eV Core-core repulsion = 26058.284370 eV Total energy + Delta-G solvation = -3841.612320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.58404 -39.09599 -38.21790 -36.50474 -34.33844 -33.24193 -32.43409 -31.07478 -30.15726 -28.90909 -27.36238 -27.09584 -25.85405 -24.69803 -22.80730 -22.51494 -21.28235 -20.59526 -20.38374 -19.44089 -19.15607 -17.28147 -16.96936 -16.86651 -16.21414 -15.70173 -15.29210 -14.85258 -14.72297 -14.57942 -14.38166 -13.95171 -13.60614 -13.57454 -13.41199 -13.13892 -12.88362 -12.74370 -12.64706 -12.42994 -12.27969 -12.15776 -11.80633 -11.49937 -11.42013 -11.36165 -11.26474 -11.04066 -10.86357 -10.85201 -10.76811 -10.70824 -10.37609 -10.18396 -10.10392 -9.81081 -9.69815 -9.20310 -9.08668 -8.84046 -8.71450 -8.30057 -6.84087 -5.76892 -3.13741 1.11826 1.23602 2.65817 3.15586 3.39320 3.44430 3.45923 3.61344 4.30401 4.40688 4.47505 4.50782 4.64062 4.78840 4.81602 4.84030 4.89280 4.98492 5.09367 5.17962 5.20031 5.33144 5.35801 5.41118 5.42064 5.45885 5.54393 5.57046 5.60509 5.65907 5.76651 5.77361 5.81881 5.85939 5.88122 5.91990 6.03326 6.14883 6.18589 6.23075 6.27823 6.28487 6.35901 6.40876 6.55872 6.71095 6.81159 6.83913 6.91786 7.33094 7.57608 7.61574 7.73675 8.19795 8.31114 9.08420 9.73814 10.51356 11.35928 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002620 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.975007 B =10682.778924 C =12253.174916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.093 4.093 5 C -0.067 4.067 6 H 0.097 0.903 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.696 5.696 10 C 0.096 3.904 11 H 0.130 0.870 12 C -0.184 4.184 13 H 0.101 0.899 14 C 0.159 3.841 15 N -0.599 5.599 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.181 3.819 25 C -0.177 4.177 26 H 0.100 0.900 27 C -0.077 4.077 28 C -0.112 4.112 29 C -0.121 4.121 30 C -0.120 4.120 31 C -0.118 4.118 32 C -0.103 4.103 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.397 0.603 43 H 0.050 0.950 44 H 0.026 0.974 45 H 0.254 0.746 46 H 0.028 0.972 47 H 0.102 0.898 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 17.004 17.037 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.130 4.130 5 C -0.088 4.088 6 H 0.115 0.885 7 C 0.312 3.688 8 O -0.409 6.409 9 N -0.343 5.343 10 C -0.010 4.010 11 H 0.147 0.853 12 C -0.205 4.205 13 H 0.119 0.881 14 C 0.032 3.968 15 N -0.324 5.324 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.743 3.257 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.056 3.944 25 C -0.198 4.198 26 H 0.118 0.882 27 C -0.077 4.077 28 C -0.130 4.130 29 C -0.139 4.139 30 C -0.138 4.138 31 C -0.136 4.136 32 C -0.121 4.121 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.231 0.769 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.120 0.880 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.599 17.049 16.688 25.038 hybrid contribution -0.557 -0.963 -0.511 1.224 sum -8.156 16.086 16.176 24.227 Atomic orbital electron populations 1.21919 0.95478 1.01566 1.01721 1.21166 0.95481 0.96581 0.98770 1.21781 1.01258 0.95625 1.01414 1.21548 1.02540 0.90895 0.98045 1.20407 1.01165 0.96285 0.90987 0.88512 1.20321 0.86057 0.79692 0.82724 1.90689 1.21976 1.62841 1.65423 1.45431 1.19583 1.30687 1.38640 1.21870 0.96391 0.93962 0.88776 0.85270 1.24358 1.00077 1.04078 0.91996 0.88069 1.21062 0.95342 0.87174 0.93197 1.46005 1.80679 1.01773 1.03909 1.19018 1.27292 0.94952 0.93981 0.90562 1.24936 0.98974 0.98910 0.97416 1.69816 1.40512 1.24234 1.21805 0.86113 0.77878 0.80474 0.81266 1.21448 1.21674 1.20621 1.21834 0.91790 0.98820 0.81942 1.24607 1.04330 0.89763 1.01142 0.88188 1.19432 0.93994 0.99156 0.95134 1.21034 0.98901 0.98066 0.94986 1.21110 0.96433 0.99666 0.96658 1.21189 0.93243 0.99468 0.99883 1.21175 0.99566 0.97931 0.94896 1.21164 0.95901 0.98700 0.96357 0.92693 0.92684 0.92785 0.90591 0.92491 0.92771 0.92919 0.91133 0.90271 0.76927 0.93109 0.95616 0.93541 0.95358 0.88036 0.86002 0.86008 0.86127 0.85946 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.97 37.16 0.33 -0.85 16 2 C -0.10 -0.97 2.79 -90.62 -0.25 -1.22 16 3 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 4 C -0.09 -0.89 3.58 -26.73 -0.10 -0.99 16 5 C -0.07 -0.68 2.25 -92.93 -0.21 -0.89 16 6 H 0.10 0.78 6.09 -51.93 -0.32 0.47 16 7 C 0.53 7.21 5.62 -10.99 -0.06 7.14 16 8 O -0.53 -9.17 15.02 5.56 0.08 -9.09 16 9 N -0.70 -9.48 5.56 -53.81 -0.30 -9.78 16 10 C 0.10 1.64 5.96 -67.93 -0.40 1.24 16 11 H 0.13 2.52 7.43 -51.93 -0.39 2.14 16 12 C -0.18 -3.33 7.05 -89.29 -0.63 -3.95 16 13 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.16 3.42 7.05 -2.40 -0.02 3.40 16 15 N -0.60 -15.52 3.46 -165.82 -0.57 -16.09 16 16 C -0.22 -6.28 10.37 -15.06 -0.16 -6.44 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 19 N -0.92 -26.84 10.57 55.49 0.59 -26.25 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.18 4.39 5.99 -0.37 0.00 4.38 16 25 C -0.18 -3.39 6.96 -89.29 -0.62 -4.01 16 26 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 27 C -0.08 -0.80 4.77 -104.62 -0.50 -1.30 16 28 C -0.11 -1.02 9.67 -39.58 -0.38 -1.40 16 29 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 30 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 31 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 32 C -0.10 -1.17 8.87 -39.58 -0.35 -1.52 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.41 6.48 -51.93 -0.34 0.07 16 36 H 0.08 0.92 6.91 -51.93 -0.36 0.56 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.08 0.88 7.10 -51.93 -0.37 0.51 16 42 H 0.40 4.38 8.83 -40.82 -0.36 4.02 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 2.74 6.31 -51.93 -0.33 2.41 16 48 H 0.12 0.85 7.95 -52.49 -0.42 0.43 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 52 H 0.13 1.54 7.50 -52.48 -0.39 1.15 16 LS Contribution 414.69 15.07 6.25 6.25 Total: -1.00 -31.90 414.69 -12.00 -43.90 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.73 Total: 6.17 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -4.30 Total: -12.10 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.29 Total: -52.12 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.90 -12.00 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114939862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.089 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds