Wall clock time and date at job start Wed Apr 1 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 C 1.53002 * 109.46786 * 120.00127 * 2 1 3 5 5 C 1.52999 * 109.47316 * 65.82922 * 4 2 1 6 6 H 1.09001 * 109.47112 * 305.57905 * 5 4 2 7 7 C 1.50697 * 109.47118 * 65.57859 * 5 4 2 8 8 O 1.21282 * 119.99933 * 28.11222 * 7 5 4 9 9 N 1.34777 * 120.00259 * 208.11221 * 7 5 4 10 10 C 1.46501 * 120.00119 * 185.15939 * 9 7 5 11 11 H 1.09000 * 115.51309 * 9.41090 * 10 9 7 12 12 C 1.53000 * 117.43939 * 224.00445 * 10 9 7 13 13 H 1.08996 * 119.54419 * 4.11003 * 12 10 9 14 14 C 1.54395 * 118.12044 * 160.80852 * 12 10 9 15 15 N 1.48149 * 104.61538 * 87.18685 * 14 12 10 16 16 C 1.36939 * 127.83554 * 140.41398 * 15 14 12 17 17 H 1.08002 * 120.00153 * 342.44298 * 16 15 14 18 18 C 1.38811 * 120.00158 * 162.44089 * 16 15 14 19 19 N 1.31622 * 119.99727 * 3.06077 * 18 16 15 20 20 Si 1.86796 * 120.00263 * 183.05407 * 18 16 15 21 21 H 1.48500 * 109.46943 * 90.00218 * 20 18 16 22 22 H 1.48501 * 109.47307 * 210.00499 * 20 18 16 23 23 H 1.48500 * 109.46923 * 330.00317 * 20 18 16 24 24 C 1.51689 * 104.54823 * 320.18706 * 15 14 12 25 25 C 1.52997 * 117.44307 * 154.83439 * 10 9 7 26 26 H 1.08995 * 119.53770 * 355.87510 * 25 10 9 27 27 C 1.50695 * 109.47163 * 185.57989 * 5 4 2 28 28 C 1.38239 * 120.00175 * 119.99917 * 27 5 4 29 29 C 1.38232 * 120.00152 * 180.27675 * 28 27 5 30 30 C 1.38242 * 120.00017 * 359.48991 * 29 28 27 31 31 C 1.38237 * 119.99941 * 0.51318 * 30 29 28 32 32 C 1.38236 * 119.99664 * 359.74119 * 31 30 29 33 33 H 1.08991 * 109.47292 * 300.00113 * 1 2 3 34 34 H 1.09002 * 109.46616 * 59.99831 * 1 2 3 35 35 H 1.08996 * 109.47264 * 179.97438 * 1 2 3 36 36 H 1.08997 * 109.47589 * 239.99570 * 2 1 3 37 37 H 1.09006 * 109.46837 * 179.97438 * 3 2 1 38 38 H 1.08997 * 109.47097 * 299.99925 * 3 2 1 39 39 H 1.09001 * 109.46652 * 60.00069 * 3 2 1 40 40 H 1.09007 * 109.47025 * 305.82740 * 4 2 1 41 41 H 1.09004 * 109.47268 * 185.83072 * 4 2 1 42 42 H 0.96997 * 119.99413 * 5.15403 * 9 7 5 43 43 H 1.09000 * 110.40421 * 205.96635 * 14 12 10 44 44 H 1.08993 * 110.40408 * 328.40065 * 14 12 10 45 45 H 0.97001 * 119.99952 * 179.97438 * 19 18 16 46 46 H 1.08997 * 111.96043 * 281.12911 * 24 15 14 47 47 H 1.09007 * 110.48859 * 157.55662 * 24 15 14 48 48 H 1.07995 * 119.99866 * 0.02562 * 28 27 5 49 49 H 1.08002 * 120.00129 * 179.72960 * 29 28 27 50 50 H 1.07998 * 119.99886 * 180.23473 * 30 29 28 51 51 H 1.07999 * 120.00262 * 179.72310 * 31 30 29 52 52 H 1.08004 * 119.99985 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6531 -2.1999 1.1782 6 1 0.5774 -2.2870 1.0248 7 6 2.3786 -2.8543 0.0309 8 8 3.4524 -2.4232 -0.3325 9 7 1.8344 -3.9188 -0.5913 10 6 2.5885 -4.6246 -1.6302 11 1 3.6339 -4.3330 -1.7315 12 6 1.8379 -5.0126 -2.9057 13 1 0.8017 -4.7004 -3.0355 14 6 2.6663 -5.3339 -4.1684 15 7 2.9811 -6.7769 -4.0517 16 6 2.9966 -7.7165 -5.0478 17 1 2.4982 -7.5180 -5.9852 18 6 3.6529 -8.9240 -4.8528 19 7 4.2087 -9.1906 -3.6898 20 14 3.7472 -10.1706 -6.2407 21 1 4.9687 -9.9216 -7.0475 22 1 3.8004 -11.5414 -5.6720 23 1 2.5473 -10.0399 -7.1058 24 6 3.2890 -6.9819 -2.5806 25 6 2.2384 -6.0926 -1.8814 26 1 1.5006 -6.5850 -1.2480 27 6 2.0335 -2.8812 2.4673 28 6 1.0618 -3.4866 3.2421 29 6 1.4100 -4.1066 4.4275 30 6 2.7314 -4.1305 4.8330 31 6 3.7031 -3.5250 4.0583 32 6 3.3541 -2.9004 2.8755 33 1 -0.3633 0.5138 0.8899 34 1 -0.3632 0.5139 -0.8900 35 1 -0.3633 -1.0276 -0.0005 36 1 1.8934 -0.5139 -0.8899 37 1 3.1301 1.4424 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 1.6767 1.9563 0.8900 40 1 1.5938 -0.2712 2.1362 41 1 3.1250 -0.6318 1.3031 42 1 0.9434 -4.2176 -0.3511 43 1 2.0787 -5.1446 -5.0667 44 1 3.5831 -4.7447 -4.1815 45 1 4.6670 -10.0345 -3.5534 46 1 4.2962 -6.6528 -2.3252 47 1 3.1478 -8.0266 -2.3033 48 1 0.0301 -3.4716 2.9233 49 1 0.6502 -4.5758 5.0350 50 1 3.0039 -4.6182 5.7572 51 1 4.7348 -3.5398 4.3772 52 1 4.1132 -2.4270 2.2704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114939862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:12 Heat of formation + Delta-G solvation = 14.444784 kcal Electronic energy + Delta-G solvation = -29900.622815 eV Core-core repulsion = 26058.284370 eV Total energy + Delta-G solvation = -3842.338445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.61009 -40.32225 -39.40281 -37.35989 -35.96008 -34.45037 -33.75225 -31.97665 -31.77626 -29.68522 -28.90187 -27.98875 -27.67917 -25.72782 -23.83556 -23.47245 -22.64040 -21.96275 -21.40416 -20.81525 -20.42392 -18.87728 -18.21697 -17.85395 -17.52748 -16.73754 -16.48989 -16.10858 -15.83288 -15.54173 -15.46546 -15.15042 -14.89555 -14.81461 -14.62161 -14.26482 -14.13315 -13.78577 -13.63223 -13.38425 -13.27867 -13.17900 -13.06422 -12.96206 -12.91213 -12.74625 -12.53905 -12.15029 -12.13008 -12.02093 -11.95538 -11.87341 -11.66698 -11.59402 -11.53148 -11.43430 -10.96104 -10.85334 -10.66364 -9.80929 -9.70318 -9.61734 -8.91343 -7.89947 -5.29693 0.37662 0.51132 1.46120 1.48562 1.55236 1.57134 1.99275 2.47863 2.84624 2.87572 3.29357 3.51612 3.60302 3.68915 3.79772 3.84016 3.91903 4.07209 4.10245 4.13031 4.14194 4.18322 4.31704 4.35706 4.38182 4.47520 4.52170 4.64374 4.71076 4.79401 4.80599 4.84666 4.88314 4.91338 4.97570 5.02080 5.08887 5.10805 5.16209 5.17203 5.26745 5.33803 5.39282 5.45379 5.48057 5.51866 5.54718 5.58270 5.64389 5.66642 5.67107 6.11325 6.15268 6.53244 6.95769 7.23017 7.64276 8.44754 9.22173 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002620 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.975007 B =10682.778924 C =12253.174916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.054 4.054 6 H 0.128 0.872 7 C 0.525 3.475 8 O -0.574 6.574 9 N -0.684 5.684 10 C 0.117 3.883 11 H 0.101 0.899 12 C -0.166 4.166 13 H 0.135 0.865 14 C 0.152 3.848 15 N -0.623 5.623 16 C -0.240 4.240 17 H 0.083 0.917 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.266 1.266 24 C 0.183 3.817 25 C -0.177 4.177 26 H 0.123 0.877 27 C -0.088 4.088 28 C -0.110 4.110 29 C -0.123 4.123 30 C -0.125 4.125 31 C -0.133 4.133 32 C -0.126 4.126 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.415 0.585 43 H 0.063 0.937 44 H 0.016 0.984 45 H 0.250 0.750 46 H 0.000 1.000 47 H 0.071 0.929 48 H 0.151 0.849 49 H 0.148 0.852 50 H 0.141 0.859 51 H 0.129 0.871 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 17.669 18.197 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.200 4.200 4 C -0.126 4.126 5 C -0.075 4.075 6 H 0.146 0.854 7 C 0.313 3.687 8 O -0.452 6.452 9 N -0.333 5.333 10 C 0.010 3.990 11 H 0.119 0.881 12 C -0.187 4.187 13 H 0.152 0.848 14 C 0.026 3.974 15 N -0.348 5.348 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.191 1.191 24 C 0.058 3.942 25 C -0.198 4.198 26 H 0.141 0.859 27 C -0.088 4.088 28 C -0.128 4.128 29 C -0.141 4.141 30 C -0.143 4.143 31 C -0.151 4.151 32 C -0.145 4.145 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.059 0.941 46 H 0.018 0.982 47 H 0.089 0.911 48 H 0.169 0.831 49 H 0.166 0.834 50 H 0.159 0.841 51 H 0.147 0.853 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.025 17.747 17.860 27.486 hybrid contribution 0.586 -1.107 -0.830 1.503 sum -10.439 16.639 17.029 25.997 Atomic orbital electron populations 1.21902 0.93580 1.02334 1.02556 1.21132 0.97020 0.96554 0.97242 1.21779 1.00430 0.95445 1.02379 1.21516 1.01226 0.90934 0.98924 1.20394 1.02198 0.95838 0.89074 0.85395 1.21054 0.85603 0.79110 0.82966 1.90682 1.23991 1.63949 1.66591 1.45266 1.20078 1.30371 1.37621 1.21360 0.95581 0.92604 0.89442 0.88143 1.24270 1.01033 1.03164 0.90214 0.84755 1.21190 0.95674 0.84905 0.95609 1.46309 1.80882 1.03366 1.04244 1.19419 1.27135 0.95591 0.94735 0.89974 1.25791 0.99077 1.00999 0.99727 1.70036 1.41447 1.24476 1.23598 0.85044 0.78097 0.77607 0.78364 1.21450 1.21884 1.19068 1.21541 0.92101 0.98138 0.82381 1.24280 1.03378 0.89925 1.02216 0.85908 1.19490 0.93902 0.99975 0.95465 1.21367 0.99873 0.96903 0.94668 1.21502 0.96788 0.99043 0.96767 1.21505 0.93417 0.98955 1.00385 1.21362 1.00519 0.98307 0.94889 1.21166 0.96329 0.99922 0.97048 0.91114 0.92640 0.92019 0.93694 0.93885 0.92406 0.91310 0.89130 0.92713 0.74754 0.91896 0.96638 0.94100 0.98184 0.91082 0.83095 0.83388 0.84142 0.85342 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.97 71.98 0.65 -1.24 16 2 C -0.10 -1.82 2.79 -10.79 -0.03 -1.85 16 3 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 4 C -0.09 -1.61 3.58 30.59 0.11 -1.50 16 5 C -0.05 -0.99 2.25 -12.29 -0.03 -1.02 16 6 H 0.13 1.54 6.09 -2.39 -0.01 1.53 16 7 C 0.52 14.05 5.62 87.66 0.49 14.55 16 8 O -0.57 -20.48 15.02 -3.04 -0.05 -20.53 16 9 N -0.68 -17.45 5.56 -442.54 -2.46 -19.91 16 10 C 0.12 3.98 5.96 44.99 0.27 4.25 16 11 H 0.10 4.09 7.43 -2.39 -0.02 4.07 16 12 C -0.17 -5.75 7.05 -9.93 -0.07 -5.82 16 13 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 14 C 0.15 6.53 7.05 86.54 0.61 7.15 16 15 N -0.62 -32.92 3.46 -678.54 -2.34 -35.26 16 16 C -0.24 -13.64 10.37 84.03 0.87 -12.77 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 19 N -0.95 -57.35 10.57 21.65 0.23 -57.12 16 20 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.18 9.23 5.99 85.82 0.51 9.74 16 25 C -0.18 -6.68 6.96 -9.93 -0.07 -6.75 16 26 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 27 C -0.09 -1.69 4.77 -19.87 -0.09 -1.78 16 28 C -0.11 -1.63 9.67 22.27 0.22 -1.41 16 29 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 30 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 31 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 32 C -0.13 -2.90 8.87 22.27 0.20 -2.70 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.69 6.48 -2.39 -0.02 0.68 16 36 H 0.04 1.09 6.91 -2.39 -0.02 1.07 16 37 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.05 1.27 7.10 -2.39 -0.02 1.25 16 42 H 0.42 7.70 8.83 -92.71 -0.82 6.88 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.07 4.01 6.31 -2.38 -0.02 3.99 16 48 H 0.15 1.31 7.95 -2.91 -0.02 1.29 16 49 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 51 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 52 H 0.11 2.79 7.50 -2.91 -0.02 2.77 16 Total: -1.00 -72.93 414.69 2.92 -70.01 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.08 Total: 26.71 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.43 Total: -11.72 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.58 Total: -112.29 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.93 2.92 -70.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114939862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.452 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds