Wall clock time and date at job start Wed Apr 1 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 C 1.52999 * 109.47052 * 119.99689 * 2 1 3 5 5 H 1.08998 * 109.47251 * 296.84181 * 4 2 1 6 6 C 1.53001 * 109.46802 * 176.83804 * 4 2 1 7 7 C 1.50702 * 109.46716 * 174.09799 * 6 4 2 8 8 O 1.21273 * 120.00330 * 354.59884 * 7 6 4 9 9 N 1.34775 * 119.99808 * 174.60141 * 7 6 4 10 10 C 1.46502 * 120.00455 * 179.97438 * 9 7 6 11 11 H 1.08998 * 115.50792 * 9.41642 * 10 9 7 12 12 C 1.52994 * 117.44668 * 224.00457 * 10 9 7 13 13 H 1.09004 * 119.54029 * 4.11491 * 12 10 9 14 14 C 1.57744 * 116.08501 * 161.57643 * 12 10 9 15 15 N 1.48144 * 104.61764 * 87.40281 * 14 12 10 16 16 C 1.36937 * 127.83480 * 139.76214 * 15 14 12 17 17 H 1.07992 * 120.00233 * 344.66242 * 16 15 14 18 18 C 1.38816 * 119.99721 * 164.65673 * 16 15 14 19 19 N 1.31616 * 119.99722 * 359.06712 * 18 16 15 20 20 Si 1.86801 * 120.00016 * 179.06916 * 18 16 15 21 21 H 1.48501 * 109.46992 * 89.99765 * 20 18 16 22 22 H 1.48496 * 109.46855 * 210.00128 * 20 18 16 23 23 H 1.48505 * 109.46753 * 329.99817 * 20 18 16 24 24 C 1.48150 * 104.32272 * 319.76377 * 15 14 12 25 25 C 1.52997 * 117.44625 * 154.83276 * 10 9 7 26 26 H 1.09001 * 119.53855 * 355.87975 * 25 10 9 27 27 C 1.50698 * 109.46910 * 56.83890 * 4 2 1 28 28 C 1.38239 * 120.00006 * 59.72782 * 27 4 2 29 29 C 1.38239 * 120.00001 * 179.78481 * 28 27 4 30 30 C 1.38233 * 119.99792 * 0.46343 * 29 28 27 31 31 C 1.38235 * 119.99876 * 359.76707 * 30 29 28 32 32 C 1.38227 * 120.00586 * 0.02562 * 31 30 29 33 33 H 1.08998 * 109.47208 * 299.99912 * 1 2 3 34 34 H 1.09000 * 109.46818 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.46955 * 60.00084 * 1 2 3 36 36 H 1.08998 * 109.47208 * 240.00088 * 2 1 3 37 37 H 1.08999 * 109.47463 * 66.88163 * 3 2 1 38 38 H 1.08999 * 109.47259 * 186.88444 * 3 2 1 39 39 H 1.09000 * 109.47264 * 306.88322 * 3 2 1 40 40 H 1.08994 * 109.47323 * 294.09586 * 6 4 2 41 41 H 1.09001 * 109.47042 * 54.09903 * 6 4 2 42 42 H 0.97003 * 120.00119 * 0.02562 * 9 7 6 43 43 H 1.09002 * 110.95688 * 328.33753 * 14 12 10 44 44 H 1.09002 * 109.95303 * 205.96542 * 14 12 10 45 45 H 0.97009 * 119.99732 * 179.97438 * 19 18 16 46 46 H 1.08994 * 110.40758 * 280.79777 * 24 15 14 47 47 H 1.09005 * 110.50240 * 158.41738 * 24 15 14 48 48 H 1.08000 * 120.00162 * 359.97438 * 28 27 4 49 49 H 1.07995 * 119.99703 * 180.25098 * 29 28 27 50 50 H 1.07999 * 120.00087 * 179.79030 * 30 29 28 51 51 H 1.08006 * 119.99511 * 180.02562 * 31 30 29 52 52 H 1.07999 * 120.00449 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7237 -0.1757 2.1383 6 6 3.5680 -0.7904 1.2101 7 6 4.0779 -1.3694 2.5046 8 8 3.3058 -1.6034 3.4100 9 7 5.3920 -1.6272 2.6561 10 6 5.8880 -2.1896 3.9147 11 1 5.1213 -2.5192 4.6159 12 6 7.1674 -1.5885 4.5000 13 1 7.6297 -0.7301 4.0127 14 6 7.4319 -1.8746 6.0286 15 7 8.1571 -3.1663 6.0472 16 6 9.2143 -3.5247 6.8403 17 1 9.7701 -2.7679 7.3737 18 6 9.5714 -4.8609 6.9587 19 7 8.8824 -5.7850 6.3232 20 14 11.0296 -5.3475 8.0200 21 1 10.5678 -5.6050 9.4077 22 1 11.6537 -6.5774 7.4696 23 1 12.0264 -4.2467 8.0261 24 6 7.4790 -3.9822 5.0131 25 6 7.1893 -2.9925 3.8641 26 1 7.6679 -3.1801 2.9029 27 6 1.4747 -2.1175 1.2891 28 6 1.7381 -2.9995 0.2577 29 6 1.2232 -4.2819 0.2964 30 6 0.4371 -4.6791 1.3618 31 6 0.1698 -3.7956 2.3908 32 6 0.6882 -2.5147 2.3542 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.7807 1.9196 0.9451 38 1 3.1230 1.4451 -0.1232 39 1 1.5796 1.9907 -0.8220 40 1 3.8818 -1.4236 0.3803 41 1 3.9738 0.2123 1.0757 42 1 6.0097 -1.4397 1.9321 43 1 6.4940 -1.9573 6.5778 44 1 8.0516 -1.0846 6.4530 45 1 9.1322 -6.7187 6.4057 46 1 6.5485 -4.3941 5.4037 47 1 8.1334 -4.7831 4.6689 48 1 2.3486 -2.6878 -0.5768 49 1 1.4323 -4.9721 -0.5074 50 1 0.0320 -5.6798 1.3904 51 1 -0.4441 -4.1062 3.2234 52 1 0.4790 -1.8243 3.1580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115110768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:41 Heat of formation + Delta-G solvation = 16.154019 kcal Electronic energy + Delta-G solvation = -29767.200691 eV Core-core repulsion = 25924.936365 eV Total energy + Delta-G solvation = -3842.264327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.37318 -40.45823 -39.43208 -37.43796 -36.03405 -34.28764 -32.76645 -32.14618 -31.70057 -30.56970 -28.78279 -27.79687 -27.58876 -25.76231 -23.60769 -23.39529 -22.52085 -21.94721 -21.34235 -20.88291 -20.24760 -18.88231 -17.93445 -17.87353 -17.55671 -16.74892 -16.55519 -15.90551 -15.81326 -15.58055 -15.23440 -15.20307 -14.92844 -14.74912 -14.62057 -14.31841 -14.09258 -13.75736 -13.56934 -13.27913 -13.23899 -13.19570 -13.04297 -12.92757 -12.86712 -12.73750 -12.37699 -12.16629 -12.09238 -11.97357 -11.87594 -11.85531 -11.72562 -11.65444 -11.39412 -11.26463 -10.94897 -10.80178 -10.64880 -9.72144 -9.64394 -9.43856 -8.93986 -7.90118 -5.31125 0.55286 0.60673 1.45938 1.48306 1.57239 1.68373 2.06998 2.47553 2.89478 2.96696 3.28468 3.58893 3.71717 3.74393 3.82629 3.85600 3.98371 4.08507 4.15435 4.17648 4.22564 4.29510 4.33213 4.35870 4.49599 4.52518 4.56914 4.67375 4.70748 4.78820 4.83470 4.88188 4.93713 4.96315 4.98228 5.01380 5.12484 5.14245 5.23866 5.26406 5.27713 5.34797 5.42169 5.45407 5.50696 5.55772 5.59493 5.66187 5.67319 5.70641 5.86768 6.18306 6.22370 6.63466 6.99647 7.36152 7.65908 8.44028 9.21002 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.002300 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.350735 B =12170.279465 C =13224.958129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.026 4.026 5 H 0.067 0.933 6 C -0.127 4.127 7 C 0.508 3.492 8 O -0.573 6.573 9 N -0.689 5.689 10 C 0.117 3.883 11 H 0.098 0.902 12 C -0.166 4.166 13 H 0.140 0.860 14 C 0.149 3.851 15 N -0.618 5.618 16 C -0.240 4.240 17 H 0.084 0.916 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.265 1.265 24 C 0.183 3.817 25 C -0.182 4.182 26 H 0.123 0.877 27 C -0.066 4.066 28 C -0.127 4.127 29 C -0.130 4.130 30 C -0.141 4.141 31 C -0.140 4.140 32 C -0.114 4.114 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.417 0.583 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.250 0.750 46 H -0.011 1.011 47 H 0.070 0.930 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.131 0.869 51 H 0.122 0.878 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.477 12.960 -20.036 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.045 4.045 5 H 0.086 0.914 6 C -0.166 4.166 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.339 5.339 10 C 0.010 3.990 11 H 0.116 0.884 12 C -0.187 4.187 13 H 0.158 0.842 14 C 0.023 3.977 15 N -0.341 5.341 16 C -0.368 4.368 17 H 0.102 0.898 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.812 3.188 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.190 1.190 24 C 0.057 3.943 25 C -0.203 4.203 26 H 0.141 0.859 27 C -0.066 4.066 28 C -0.144 4.144 29 C -0.148 4.148 30 C -0.159 4.159 31 C -0.158 4.158 32 C -0.132 4.132 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.254 0.746 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.007 0.993 47 H 0.088 0.912 48 H 0.160 0.840 49 H 0.156 0.844 50 H 0.149 0.851 51 H 0.140 0.860 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.888 12.619 -19.300 28.003 hybrid contribution 0.789 -0.890 0.968 1.533 sum -15.100 11.730 -18.332 26.489 Atomic orbital electron populations 1.21819 0.95392 1.01295 1.01751 1.21117 0.95732 0.96500 0.96450 1.21929 1.01931 0.94858 1.02050 1.20036 0.92759 0.92068 0.99606 0.91441 1.21907 0.96084 1.04558 0.94044 1.21444 0.81270 0.77038 0.90597 1.90705 1.56467 1.53406 1.44590 1.45279 1.08815 1.64237 1.15587 1.21323 0.89742 0.99418 0.88557 0.88439 1.24987 1.00806 0.97159 0.95742 0.84200 1.21841 0.94551 0.88539 0.92792 1.45415 1.35204 1.12107 1.41409 1.19425 1.04821 0.92002 1.20601 0.89801 1.25813 1.02718 0.95559 1.01731 1.70051 1.42642 1.00075 1.46966 0.84999 0.78494 0.77482 0.77845 1.21356 1.21835 1.18985 1.20935 0.93891 0.93003 0.86428 1.24301 1.00546 0.94954 1.00513 0.85927 1.19847 0.96547 0.96223 0.93974 1.21228 1.00764 0.93557 0.98890 1.21408 0.97759 0.96803 0.98824 1.21360 0.99707 1.00020 0.94787 1.21338 1.00902 0.94321 0.99218 1.21088 0.97926 0.96387 0.97826 0.93493 0.93690 0.91580 0.89503 0.93253 0.91095 0.91638 0.86464 0.85313 0.74638 0.96286 0.91985 0.94081 0.99350 0.91153 0.83959 0.84352 0.85110 0.86039 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.90 71.98 0.64 -1.29 16 2 C -0.08 -0.91 2.28 -10.79 -0.02 -0.94 16 3 C -0.15 -1.36 8.74 71.98 0.63 -0.73 16 4 C -0.03 -0.44 1.28 -11.54 -0.01 -0.45 16 5 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 6 C -0.13 -1.84 4.93 29.85 0.15 -1.70 16 7 C 0.51 12.70 7.52 87.66 0.66 13.36 16 8 O -0.57 -19.83 14.02 -3.01 -0.04 -19.87 16 9 N -0.69 -16.59 5.56 -442.55 -2.46 -19.06 16 10 C 0.12 3.93 5.93 44.99 0.27 4.19 16 11 H 0.10 4.00 7.40 -2.39 -0.02 3.98 16 12 C -0.17 -5.68 7.33 -8.73 -0.06 -5.74 16 13 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 14 C 0.15 6.39 7.10 87.74 0.62 7.02 16 15 N -0.62 -32.75 3.39 -681.30 -2.31 -35.06 16 16 C -0.24 -13.63 10.37 84.03 0.87 -12.75 16 17 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 18 C -0.07 -3.73 5.47 84.86 0.46 -3.26 16 19 N -0.95 -57.76 10.56 21.65 0.23 -57.53 16 20 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 C 0.18 9.35 5.79 86.53 0.50 9.86 16 25 C -0.18 -6.88 6.97 -9.94 -0.07 -6.95 16 26 H 0.12 4.07 8.14 -2.39 -0.02 4.06 16 27 C -0.07 -1.40 2.43 -19.86 -0.05 -1.45 16 28 C -0.13 -2.36 8.68 22.27 0.19 -2.17 16 29 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 30 C -0.14 -3.08 10.05 22.27 0.22 -2.86 16 31 C -0.14 -3.43 10.05 22.27 0.22 -3.21 16 32 C -0.11 -2.93 8.81 22.27 0.20 -2.73 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.04 0.72 7.12 -2.39 -0.02 0.71 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.78 7.49 -2.39 -0.02 0.77 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.46 6.74 -2.39 -0.02 0.44 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.12 1.19 7.22 -2.39 -0.02 1.17 16 41 H 0.13 1.17 6.39 -2.39 -0.02 1.15 16 42 H 0.42 6.90 8.83 -92.71 -0.82 6.08 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 46 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 47 H 0.07 4.02 6.20 -2.38 -0.01 4.01 16 48 H 0.14 1.81 7.11 -2.91 -0.02 1.79 16 49 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 50 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 51 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 52 H 0.11 2.86 7.95 -2.91 -0.02 2.84 16 Total: -1.00 -74.56 410.68 3.17 -71.38 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.09 Total: 26.46 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 5.64 Total: -14.13 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.54 Total: -111.65 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.56 3.17 -71.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115110768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.539 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds