Wall clock time and date at job start Wed Apr 1 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47382 * 120.00081 * 2 1 3 5 5 H 1.08997 * 109.47253 * 58.75878 * 4 2 1 6 6 C 1.52999 * 109.47086 * 178.75542 * 4 2 1 7 7 C 1.50693 * 109.47460 * 295.36362 * 6 4 2 8 8 O 1.21280 * 119.99776 * 0.20783 * 7 6 4 9 9 N 1.34772 * 120.00366 * 180.20230 * 7 6 4 10 10 C 1.46505 * 120.00395 * 180.02562 * 9 7 6 11 11 H 1.08996 * 115.51237 * 9.41856 * 10 9 7 12 12 C 1.52998 * 117.44319 * 224.00627 * 10 9 7 13 13 H 1.09000 * 119.54274 * 4.11810 * 12 10 9 14 14 C 1.54390 * 118.12189 * 160.80767 * 12 10 9 15 15 N 1.48145 * 104.61795 * 87.18658 * 14 12 10 16 16 C 1.36939 * 127.83564 * 140.41313 * 15 14 12 17 17 H 1.07996 * 120.00057 * 338.88200 * 16 15 14 18 18 C 1.38809 * 119.99949 * 158.88582 * 16 15 14 19 19 N 1.31621 * 120.00015 * 3.46246 * 18 16 15 20 20 Si 1.86796 * 120.00172 * 183.46380 * 18 16 15 21 21 H 1.48498 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47317 * 119.99675 * 20 18 16 23 23 H 1.48506 * 109.47273 * 239.99791 * 20 18 16 24 24 C 1.51687 * 104.55054 * 320.19298 * 15 14 12 25 25 C 1.52991 * 117.44363 * 154.83528 * 10 9 7 26 26 H 1.08995 * 119.54362 * 355.88362 * 25 10 9 27 27 C 1.50701 * 109.47236 * 298.75832 * 4 2 1 28 28 C 1.38240 * 119.99519 * 286.33495 * 27 4 2 29 29 C 1.38239 * 119.99558 * 179.78682 * 28 27 4 30 30 C 1.38239 * 119.99855 * 0.46450 * 29 28 27 31 31 C 1.38235 * 120.00074 * 359.76284 * 30 29 28 32 32 C 1.38229 * 120.00093 * 0.03031 * 31 30 29 33 33 H 1.09001 * 109.47058 * 295.68270 * 1 2 3 34 34 H 1.08993 * 109.47677 * 55.68620 * 1 2 3 35 35 H 1.09002 * 109.47417 * 175.69135 * 1 2 3 36 36 H 1.08997 * 109.46890 * 240.00026 * 2 1 3 37 37 H 1.09000 * 109.46920 * 294.48674 * 3 2 1 38 38 H 1.09004 * 109.47045 * 54.48275 * 3 2 1 39 39 H 1.09004 * 109.47302 * 174.48344 * 3 2 1 40 40 H 1.08996 * 109.47253 * 55.36635 * 6 4 2 41 41 H 1.09001 * 109.47179 * 175.36179 * 6 4 2 42 42 H 0.97001 * 120.00131 * 0.02562 * 9 7 6 43 43 H 1.09003 * 110.40883 * 205.97638 * 14 12 10 44 44 H 1.09007 * 110.40591 * 328.40733 * 14 12 10 45 45 H 0.96997 * 119.99973 * 180.02562 * 19 18 16 46 46 H 1.08999 * 111.96219 * 281.12336 * 24 15 14 47 47 H 1.09000 * 110.49751 * 157.55313 * 24 15 14 48 48 H 1.07998 * 120.00474 * 359.97438 * 28 27 4 49 49 H 1.07995 * 119.99749 * 180.25467 * 29 28 27 50 50 H 1.08004 * 119.99726 * 179.79285 * 30 29 28 51 51 H 1.07995 * 119.99580 * 179.97438 * 31 30 29 52 52 H 1.07995 * 120.00188 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6587 -1.7423 1.2604 6 6 3.5697 -0.7484 1.2336 7 6 4.0456 -1.5730 0.0655 8 8 3.2406 -2.0852 -0.6832 9 7 5.3658 -1.7413 -0.1473 10 6 5.8285 -2.5425 -1.2832 11 1 5.0580 -2.8339 -1.9970 12 6 6.9663 -3.5335 -1.0301 13 1 7.3492 -3.6652 -0.0181 14 6 7.1696 -4.6819 -2.0417 15 7 8.0532 -4.1099 -3.0842 16 6 9.0909 -4.7226 -3.7345 17 1 9.5674 -5.5872 -3.2967 18 6 9.5306 -4.2322 -4.9564 19 7 8.9961 -3.1388 -5.4575 20 14 10.8807 -5.1241 -5.8896 21 1 11.3112 -6.3172 -5.1173 22 1 10.3668 -5.5513 -7.2158 23 1 12.0380 -4.2126 -6.0774 24 6 7.5482 -2.6925 -3.2760 25 6 7.2240 -2.2441 -1.8346 26 1 7.7990 -1.4152 -1.4219 27 6 1.5630 0.0067 2.4795 28 6 2.1371 1.2130 2.8349 29 6 1.6966 1.8828 3.9611 30 6 0.6886 1.3417 4.7370 31 6 0.1178 0.1332 4.3842 32 6 0.5554 -0.5346 3.2558 33 1 -0.3633 0.4454 0.9262 34 1 -0.3634 0.5793 -0.8487 35 1 -0.3634 -1.0248 -0.0772 36 1 1.8932 -0.5138 -0.8900 37 1 1.7595 1.9270 -0.9352 38 1 1.5982 1.9841 0.8365 39 1 3.1255 1.4441 0.0988 40 1 3.9502 0.2686 1.1394 41 1 3.9348 -1.1883 2.1616 42 1 6.0096 -1.3319 0.4517 43 1 7.6517 -5.5324 -1.5595 44 1 6.2148 -4.9804 -2.4748 45 1 9.3030 -2.7964 -6.3116 46 1 6.6517 -2.6594 -3.8950 47 1 8.3293 -2.0635 -3.7030 48 1 2.9277 1.6335 2.2312 49 1 2.1422 2.8272 4.2364 50 1 0.3467 1.8635 5.6187 51 1 -0.6694 -0.2897 4.9907 52 1 0.1097 -1.4790 2.9803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115110770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:45 Heat of formation + Delta-G solvation = 38.530511 kcal Electronic energy + Delta-G solvation = -29468.170533 eV Core-core repulsion = 25626.876523 eV Total energy + Delta-G solvation = -3841.294009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.64223 -39.48478 -38.27753 -36.47656 -34.33327 -32.70683 -31.78803 -31.29216 -30.43945 -29.61029 -27.38158 -27.12068 -25.85999 -24.80335 -22.78597 -22.10094 -21.73445 -20.53570 -20.26575 -19.36721 -19.16110 -17.22125 -16.90100 -16.60079 -16.23782 -15.83632 -15.51511 -15.12411 -14.95922 -14.68393 -14.18154 -13.90684 -13.64458 -13.61046 -13.45816 -13.15983 -12.91779 -12.73129 -12.70449 -12.23764 -12.18839 -12.12857 -11.97720 -11.57707 -11.45727 -11.33668 -11.20520 -11.03277 -10.89955 -10.85949 -10.72837 -10.51366 -10.36930 -10.15683 -10.11076 -9.78451 -9.61779 -9.20515 -9.13398 -8.90090 -8.69971 -8.31332 -6.81719 -5.80713 -3.17237 1.10572 1.14460 2.65635 3.14411 3.37645 3.43864 3.46017 3.53461 4.32006 4.38815 4.44872 4.46955 4.73208 4.74225 4.75369 4.84102 4.89049 5.03333 5.11137 5.18055 5.22468 5.25597 5.33907 5.34624 5.37781 5.41504 5.55769 5.57151 5.67258 5.73526 5.74167 5.79024 5.80741 5.84355 5.87277 5.90918 6.09768 6.16134 6.18141 6.21768 6.24219 6.26108 6.43283 6.44910 6.54768 6.70733 6.75332 6.82557 6.90959 7.31484 7.56095 7.60379 7.71746 8.17830 8.31480 9.06558 9.71879 10.51216 11.33813 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.001876 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.739940 B =14925.531962 C =15138.054632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.158 4.158 4 C -0.027 4.027 5 H 0.087 0.913 6 C -0.139 4.139 7 C 0.515 3.485 8 O -0.535 6.535 9 N -0.699 5.699 10 C 0.095 3.905 11 H 0.131 0.869 12 C -0.184 4.184 13 H 0.101 0.899 14 C 0.158 3.842 15 N -0.599 5.599 16 C -0.226 4.226 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.914 5.914 20 Si 0.911 3.089 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.184 3.816 25 C -0.179 4.179 26 H 0.100 0.900 27 C -0.066 4.066 28 C -0.117 4.117 29 C -0.122 4.122 30 C -0.128 4.128 31 C -0.120 4.120 32 C -0.115 4.115 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.398 0.602 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.254 0.746 46 H 0.031 0.969 47 H 0.094 0.906 48 H 0.125 0.875 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 11.321 20.287 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.215 4.215 4 C -0.046 4.046 5 H 0.105 0.895 6 C -0.178 4.178 7 C 0.302 3.698 8 O -0.411 6.411 9 N -0.348 5.348 10 C -0.011 4.011 11 H 0.149 0.851 12 C -0.205 4.205 13 H 0.119 0.881 14 C 0.032 3.968 15 N -0.323 5.323 16 C -0.354 4.354 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.560 5.560 20 Si 0.741 3.259 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.059 3.941 25 C -0.200 4.200 26 H 0.118 0.882 27 C -0.067 4.067 28 C -0.134 4.134 29 C -0.140 4.140 30 C -0.146 4.146 31 C -0.138 4.138 32 C -0.133 4.133 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.231 0.769 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.112 0.888 48 H 0.143 0.857 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.755 10.938 19.513 27.948 hybrid contribution 1.135 -0.104 -0.004 1.139 sum -15.620 10.833 19.509 27.239 Atomic orbital electron populations 1.21812 0.95334 1.01599 1.01383 1.21253 0.95835 0.95822 0.98385 1.22176 1.00701 0.96685 1.01907 1.19963 0.92810 0.99795 0.92053 0.89459 1.21851 0.97108 1.01287 0.97593 1.20559 0.82121 0.80873 0.86263 1.90673 1.53548 1.49088 1.47821 1.45452 1.06986 1.52459 1.29878 1.21870 0.92180 0.96595 0.90419 0.85146 1.24364 1.02413 0.94149 0.99615 0.88065 1.21070 0.93949 0.92686 0.89118 1.45983 1.33826 1.08688 1.43835 1.19026 1.06924 1.10689 0.98777 0.90641 1.25018 1.00186 0.98295 0.96568 1.69856 1.44492 1.22038 1.19659 0.86066 0.80862 0.79043 0.79924 1.20360 1.21553 1.21747 1.21739 0.98216 0.86552 0.87552 1.24599 0.96118 0.98580 1.00701 0.88168 1.19834 0.96035 0.95085 0.95698 1.21180 1.00459 0.94997 0.96811 1.21145 0.97520 0.99947 0.95344 1.21122 0.97293 0.96254 0.99898 1.21124 1.00037 0.95526 0.97150 1.21083 0.97138 1.00058 0.94983 0.92871 0.92950 0.92761 0.88389 0.92818 0.92050 0.92769 0.88463 0.88824 0.76855 0.93102 0.95602 0.93555 0.95121 0.88801 0.85731 0.86280 0.86443 0.86305 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.02 37.16 0.34 -1.03 16 2 C -0.09 -0.97 2.49 -90.62 -0.23 -1.19 16 3 C -0.16 -1.40 7.59 37.16 0.28 -1.12 16 4 C -0.03 -0.26 1.61 -91.77 -0.15 -0.41 16 5 H 0.09 0.93 7.76 -51.93 -0.40 0.53 16 6 C -0.14 -1.24 4.52 -27.89 -0.13 -1.37 16 7 C 0.52 6.62 7.54 -10.99 -0.08 6.54 16 8 O -0.53 -8.85 13.51 5.56 0.08 -8.77 16 9 N -0.70 -8.93 5.56 -53.81 -0.30 -9.23 16 10 C 0.10 1.58 5.97 -67.93 -0.41 1.18 16 11 H 0.13 2.48 7.40 -51.93 -0.38 2.10 16 12 C -0.18 -3.27 7.05 -89.29 -0.63 -3.90 16 13 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 14 C 0.16 3.37 7.05 -2.41 -0.02 3.36 16 15 N -0.60 -15.39 3.45 -165.83 -0.57 -15.96 16 16 C -0.23 -6.30 10.35 -15.06 -0.16 -6.45 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 19 N -0.91 -26.67 10.74 55.49 0.60 -26.07 16 20 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 C 0.18 4.40 5.91 -0.37 0.00 4.40 16 25 C -0.18 -3.33 6.96 -89.30 -0.62 -3.95 16 26 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 27 C -0.07 -0.56 3.58 -104.62 -0.38 -0.94 16 28 C -0.12 -0.91 6.90 -39.58 -0.27 -1.18 16 29 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 30 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 31 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 32 C -0.11 -0.95 9.13 -39.59 -0.36 -1.31 16 33 H 0.05 0.49 6.70 -51.93 -0.35 0.14 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 1.28 5.89 -51.93 -0.31 0.98 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.51 5.68 -51.93 -0.30 0.21 16 39 H 0.05 0.45 5.82 -51.93 -0.30 0.15 16 40 H 0.10 0.72 5.03 -51.93 -0.26 0.46 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.40 3.95 8.83 -40.82 -0.36 3.58 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 2.49 6.57 -51.93 -0.34 2.15 16 48 H 0.12 0.84 5.39 -52.49 -0.28 0.56 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 51 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 52 H 0.12 0.90 7.99 -52.49 -0.42 0.48 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -31.72 402.09 -11.58 -43.30 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.32 Total: 5.28 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -4.09 Total: -11.48 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.27 Total: -51.27 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.72 -11.58 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115110770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.832 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds