Wall clock time and date at job start Wed Apr 1 2020 02:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47382 * 120.00081 * 2 1 3 5 5 H 1.08997 * 109.47253 * 58.75878 * 4 2 1 6 6 C 1.52999 * 109.47086 * 178.75542 * 4 2 1 7 7 C 1.50693 * 109.47460 * 295.36362 * 6 4 2 8 8 O 1.21280 * 119.99776 * 0.20783 * 7 6 4 9 9 N 1.34772 * 120.00366 * 180.20230 * 7 6 4 10 10 C 1.46505 * 120.00395 * 180.02562 * 9 7 6 11 11 H 1.08996 * 115.51237 * 9.41856 * 10 9 7 12 12 C 1.52998 * 117.44319 * 224.00627 * 10 9 7 13 13 H 1.09000 * 119.54274 * 4.11810 * 12 10 9 14 14 C 1.54390 * 118.12189 * 160.80767 * 12 10 9 15 15 N 1.48145 * 104.61795 * 87.18658 * 14 12 10 16 16 C 1.36939 * 127.83564 * 140.41313 * 15 14 12 17 17 H 1.07996 * 120.00057 * 338.88200 * 16 15 14 18 18 C 1.38809 * 119.99949 * 158.88582 * 16 15 14 19 19 N 1.31621 * 120.00015 * 3.46246 * 18 16 15 20 20 Si 1.86796 * 120.00172 * 183.46380 * 18 16 15 21 21 H 1.48498 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47317 * 119.99675 * 20 18 16 23 23 H 1.48506 * 109.47273 * 239.99791 * 20 18 16 24 24 C 1.51687 * 104.55054 * 320.19298 * 15 14 12 25 25 C 1.52991 * 117.44363 * 154.83528 * 10 9 7 26 26 H 1.08995 * 119.54362 * 355.88362 * 25 10 9 27 27 C 1.50701 * 109.47236 * 298.75832 * 4 2 1 28 28 C 1.38240 * 119.99519 * 286.33495 * 27 4 2 29 29 C 1.38239 * 119.99558 * 179.78682 * 28 27 4 30 30 C 1.38239 * 119.99855 * 0.46450 * 29 28 27 31 31 C 1.38235 * 120.00074 * 359.76284 * 30 29 28 32 32 C 1.38229 * 120.00093 * 0.03031 * 31 30 29 33 33 H 1.09001 * 109.47058 * 295.68270 * 1 2 3 34 34 H 1.08993 * 109.47677 * 55.68620 * 1 2 3 35 35 H 1.09002 * 109.47417 * 175.69135 * 1 2 3 36 36 H 1.08997 * 109.46890 * 240.00026 * 2 1 3 37 37 H 1.09000 * 109.46920 * 294.48674 * 3 2 1 38 38 H 1.09004 * 109.47045 * 54.48275 * 3 2 1 39 39 H 1.09004 * 109.47302 * 174.48344 * 3 2 1 40 40 H 1.08996 * 109.47253 * 55.36635 * 6 4 2 41 41 H 1.09001 * 109.47179 * 175.36179 * 6 4 2 42 42 H 0.97001 * 120.00131 * 0.02562 * 9 7 6 43 43 H 1.09003 * 110.40883 * 205.97638 * 14 12 10 44 44 H 1.09007 * 110.40591 * 328.40733 * 14 12 10 45 45 H 0.96997 * 119.99973 * 180.02562 * 19 18 16 46 46 H 1.08999 * 111.96219 * 281.12336 * 24 15 14 47 47 H 1.09000 * 110.49751 * 157.55313 * 24 15 14 48 48 H 1.07998 * 120.00474 * 359.97438 * 28 27 4 49 49 H 1.07995 * 119.99749 * 180.25467 * 29 28 27 50 50 H 1.08004 * 119.99726 * 179.79285 * 30 29 28 51 51 H 1.07995 * 119.99580 * 179.97438 * 31 30 29 52 52 H 1.07995 * 120.00188 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6587 -1.7423 1.2604 6 6 3.5697 -0.7484 1.2336 7 6 4.0456 -1.5730 0.0655 8 8 3.2406 -2.0852 -0.6832 9 7 5.3658 -1.7413 -0.1473 10 6 5.8285 -2.5425 -1.2832 11 1 5.0580 -2.8339 -1.9970 12 6 6.9663 -3.5335 -1.0301 13 1 7.3492 -3.6652 -0.0181 14 6 7.1696 -4.6819 -2.0417 15 7 8.0532 -4.1099 -3.0842 16 6 9.0909 -4.7226 -3.7345 17 1 9.5674 -5.5872 -3.2967 18 6 9.5306 -4.2322 -4.9564 19 7 8.9961 -3.1388 -5.4575 20 14 10.8807 -5.1241 -5.8896 21 1 11.3112 -6.3172 -5.1173 22 1 10.3668 -5.5513 -7.2158 23 1 12.0380 -4.2126 -6.0774 24 6 7.5482 -2.6925 -3.2760 25 6 7.2240 -2.2441 -1.8346 26 1 7.7990 -1.4152 -1.4219 27 6 1.5630 0.0067 2.4795 28 6 2.1371 1.2130 2.8349 29 6 1.6966 1.8828 3.9611 30 6 0.6886 1.3417 4.7370 31 6 0.1178 0.1332 4.3842 32 6 0.5554 -0.5346 3.2558 33 1 -0.3633 0.4454 0.9262 34 1 -0.3634 0.5793 -0.8487 35 1 -0.3634 -1.0248 -0.0772 36 1 1.8932 -0.5138 -0.8900 37 1 1.7595 1.9270 -0.9352 38 1 1.5982 1.9841 0.8365 39 1 3.1255 1.4441 0.0988 40 1 3.9502 0.2686 1.1394 41 1 3.9348 -1.1883 2.1616 42 1 6.0096 -1.3319 0.4517 43 1 7.6517 -5.5324 -1.5595 44 1 6.2148 -4.9804 -2.4748 45 1 9.3030 -2.7964 -6.3116 46 1 6.6517 -2.6594 -3.8950 47 1 8.3293 -2.0635 -3.7030 48 1 2.9277 1.6335 2.2312 49 1 2.1422 2.8272 4.2364 50 1 0.3467 1.8635 5.6187 51 1 -0.6694 -0.2897 4.9907 52 1 0.1097 -1.4790 2.9803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115110770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:44 Heat of formation + Delta-G solvation = 21.714659 kcal Electronic energy + Delta-G solvation = -29468.899723 eV Core-core repulsion = 25626.876523 eV Total energy + Delta-G solvation = -3842.023199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.51463 -40.55564 -39.56884 -37.26470 -35.91184 -34.33564 -32.65785 -32.01675 -31.79801 -30.51241 -28.89679 -28.09891 -27.62970 -25.80466 -23.58718 -23.23771 -22.62404 -21.95104 -21.50394 -20.78903 -20.14574 -18.86302 -18.08620 -17.61558 -17.28996 -16.72536 -16.61203 -16.26166 -15.88936 -15.73514 -15.44455 -15.11280 -14.85507 -14.67289 -14.57744 -14.25884 -14.12540 -13.78138 -13.62458 -13.31077 -13.22553 -13.20658 -12.95602 -12.92508 -12.82196 -12.74813 -12.68698 -12.18991 -12.06931 -11.99331 -11.88836 -11.78264 -11.67912 -11.59808 -11.46289 -11.24996 -10.90972 -10.70724 -10.59669 -9.68397 -9.65247 -9.48412 -8.87246 -7.92806 -5.31904 0.54250 0.59971 1.45846 1.47330 1.57876 1.61151 2.03465 2.47512 2.87826 2.97101 3.28759 3.52318 3.62652 3.73917 3.84775 3.95244 3.99868 4.06819 4.15708 4.18965 4.25215 4.27461 4.33996 4.38482 4.44212 4.53447 4.54704 4.63273 4.70748 4.77925 4.83653 4.86226 4.92895 4.94239 4.99363 5.04402 5.09046 5.12635 5.16999 5.26269 5.28386 5.34198 5.40765 5.46469 5.48991 5.55472 5.61691 5.65916 5.70306 5.73293 5.83869 6.15447 6.21755 6.59261 6.95651 7.30858 7.63701 8.45996 9.21338 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.001876 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.739940 B =14925.531962 C =15138.054632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.022 4.022 5 H 0.068 0.932 6 C -0.128 4.128 7 C 0.513 3.487 8 O -0.575 6.575 9 N -0.686 5.686 10 C 0.119 3.881 11 H 0.103 0.897 12 C -0.168 4.168 13 H 0.134 0.866 14 C 0.151 3.849 15 N -0.623 5.623 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.061 4.061 19 N -0.946 5.946 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.186 3.814 25 C -0.178 4.178 26 H 0.125 0.875 27 C -0.073 4.073 28 C -0.121 4.121 29 C -0.127 4.127 30 C -0.133 4.133 31 C -0.128 4.128 32 C -0.128 4.128 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.417 0.583 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.250 0.750 46 H 0.003 0.997 47 H 0.062 0.938 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.133 0.867 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 12.398 23.358 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.211 4.211 4 C -0.041 4.041 5 H 0.087 0.913 6 C -0.167 4.167 7 C 0.302 3.698 8 O -0.454 6.454 9 N -0.337 5.337 10 C 0.011 3.989 11 H 0.121 0.879 12 C -0.190 4.190 13 H 0.152 0.848 14 C 0.026 3.974 15 N -0.349 5.349 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.593 5.593 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.220 1.220 23 H -0.216 1.216 24 C 0.062 3.938 25 C -0.199 4.199 26 H 0.143 0.857 27 C -0.073 4.073 28 C -0.139 4.139 29 C -0.144 4.144 30 C -0.150 4.150 31 C -0.146 4.146 32 C -0.146 4.146 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.255 0.745 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.059 0.941 46 H 0.021 0.979 47 H 0.081 0.919 48 H 0.154 0.846 49 H 0.156 0.844 50 H 0.153 0.847 51 H 0.151 0.849 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.413 12.021 22.642 30.439 hybrid contribution 0.907 -0.459 -0.943 1.387 sum -15.505 11.562 21.699 29.068 Atomic orbital electron populations 1.21769 0.95131 1.01153 1.01673 1.21177 0.96097 0.96542 0.97543 1.22148 1.01220 0.95573 1.02110 1.19835 0.93137 0.98845 0.92278 0.91341 1.21875 0.96645 1.01798 0.96387 1.21298 0.81478 0.80360 0.86641 1.90680 1.54581 1.50693 1.49449 1.45275 1.07619 1.51905 1.28865 1.21352 0.90499 0.96071 0.90955 0.87930 1.24268 1.02885 0.91936 0.99861 0.84823 1.21195 0.92804 0.94425 0.89015 1.46301 1.34100 1.09804 1.44669 1.19403 1.07460 1.10753 0.99268 0.90180 1.25862 1.02947 0.99136 0.97563 1.70060 1.46150 1.23397 1.19736 0.85001 0.77925 0.78186 0.78143 1.18837 1.21968 1.21604 1.21453 0.95888 0.85951 0.90545 1.24276 0.98313 0.99949 0.97356 0.85699 1.19707 0.96651 0.95595 0.95329 1.21326 1.00709 0.94622 0.97200 1.21428 0.97401 1.00603 0.95005 1.21423 0.97054 0.96117 1.00454 1.21352 1.00420 0.95787 0.97024 1.21205 0.97457 1.00397 0.95552 0.92211 0.92937 0.93588 0.91631 0.93330 0.90974 0.91945 0.86090 0.86500 0.74538 0.92043 0.96640 0.94061 0.97933 0.91913 0.84575 0.84415 0.84658 0.84940 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.02 71.98 0.65 -2.02 16 2 C -0.10 -1.91 2.49 -10.80 -0.03 -1.94 16 3 C -0.15 -2.50 7.59 71.98 0.55 -1.95 16 4 C -0.02 -0.39 1.61 -11.54 -0.02 -0.41 16 5 H 0.07 1.47 7.76 -2.39 -0.02 1.45 16 6 C -0.13 -1.97 4.52 29.85 0.13 -1.84 16 7 C 0.51 12.47 7.54 87.66 0.66 13.13 16 8 O -0.57 -19.25 13.51 -3.03 -0.04 -19.30 16 9 N -0.69 -15.93 5.56 -442.56 -2.46 -18.40 16 10 C 0.12 3.84 5.97 44.99 0.27 4.10 16 11 H 0.10 4.00 7.40 -2.39 -0.02 3.99 16 12 C -0.17 -5.70 7.05 -9.93 -0.07 -5.77 16 13 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 14 C 0.15 6.44 7.05 86.53 0.61 7.05 16 15 N -0.62 -32.70 3.45 -678.55 -2.34 -35.04 16 16 C -0.24 -13.57 10.35 84.03 0.87 -12.70 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 19 N -0.95 -57.11 10.74 21.65 0.23 -56.87 16 20 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 C 0.19 9.24 5.91 85.83 0.51 9.75 16 25 C -0.18 -6.49 6.96 -9.94 -0.07 -6.56 16 26 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 27 C -0.07 -1.10 3.58 -19.86 -0.07 -1.17 16 28 C -0.12 -1.52 6.90 22.27 0.15 -1.37 16 29 C -0.13 -1.45 10.05 22.27 0.22 -1.22 16 30 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 31 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 32 C -0.13 -1.94 9.13 22.27 0.20 -1.73 16 33 H 0.06 1.05 6.70 -2.39 -0.02 1.03 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.78 5.89 -2.39 -0.01 1.76 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.02 5.68 -2.39 -0.01 1.01 16 39 H 0.06 0.89 5.82 -2.38 -0.01 0.88 16 40 H 0.12 1.34 5.03 -2.39 -0.01 1.33 16 41 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.42 6.66 8.83 -92.71 -0.82 5.84 16 43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.06 3.48 6.57 -2.39 -0.02 3.46 16 48 H 0.14 1.34 5.39 -2.91 -0.02 1.32 16 49 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 50 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 51 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 52 H 0.12 1.73 7.99 -2.91 -0.02 1.71 16 Total: -1.00 -71.81 402.09 3.01 -68.81 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.10 Total: 23.56 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.49 Total: -10.45 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.57 Total: -110.31 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.04 Total: -19.30 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.81 3.01 -68.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115110770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.522 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds