Wall clock time and date at job start Wed Apr 1 2020 02:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46897 * 2 1 4 4 H 1.09002 * 109.46881 * 305.38173 * 3 2 1 5 5 C 1.53002 * 109.46588 * 185.38808 * 3 2 1 6 6 C 1.50701 * 109.47326 * 64.99945 * 5 3 2 7 7 C 1.38255 * 119.99611 * 264.99577 * 6 5 3 8 8 C 1.38215 * 119.99766 * 180.02562 * 7 6 5 9 9 C 1.38262 * 119.99806 * 359.97438 * 8 7 6 10 10 C 1.38206 * 120.00222 * 359.96197 * 9 8 7 11 11 C 1.38210 * 119.99894 * 84.72514 * 6 5 3 12 12 C 1.50694 * 120.00290 * 359.97438 * 11 6 5 13 13 C 1.50695 * 109.47458 * 65.38757 * 3 2 1 14 14 O 1.21277 * 120.00007 * 35.23847 * 13 3 2 15 15 N 1.34777 * 119.99835 * 215.24159 * 13 3 2 16 16 C 1.46500 * 120.00038 * 174.89891 * 15 13 3 17 17 H 1.09004 * 115.51446 * 9.31243 * 16 15 13 18 18 C 1.52997 * 117.44609 * 223.96473 * 16 15 13 19 19 H 1.08995 * 119.53874 * 4.12143 * 18 16 15 20 20 C 1.57692 * 116.10965 * 161.63995 * 18 16 15 21 21 N 1.48139 * 104.67798 * 87.30969 * 20 18 16 22 22 C 1.36940 * 127.84005 * 139.77070 * 21 20 18 23 23 H 1.07995 * 120.00490 * 343.80544 * 22 21 20 24 24 C 1.38819 * 119.99935 * 163.80756 * 22 21 20 25 25 N 1.31617 * 119.99911 * 0.22208 * 24 22 21 26 26 Si 1.86792 * 119.99897 * 180.22289 * 24 22 21 27 27 H 1.48502 * 109.47340 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47175 * 119.99957 * 26 24 22 29 29 H 1.48503 * 109.47341 * 239.99674 * 26 24 22 30 30 C 1.48147 * 104.32258 * 319.77207 * 21 20 18 31 31 C 1.52997 * 117.44292 * 154.72053 * 16 15 13 32 32 H 1.08999 * 119.53951 * 355.88915 * 31 16 15 33 33 H 1.09004 * 109.46991 * 54.52370 * 1 2 3 34 34 H 1.08997 * 109.47428 * 174.51903 * 1 2 3 35 35 H 1.09004 * 109.47474 * 294.52618 * 1 2 3 36 36 H 1.08999 * 109.47151 * 239.99441 * 2 1 3 37 37 H 1.09002 * 109.46662 * 119.99814 * 2 1 3 38 38 H 1.09003 * 109.46677 * 184.99683 * 5 3 2 39 39 H 1.08998 * 109.47407 * 304.99221 * 5 3 2 40 40 H 1.07993 * 120.00320 * 359.97438 * 7 6 5 41 41 H 1.07997 * 119.99763 * 179.97438 * 8 7 6 42 42 H 1.07998 * 119.99493 * 179.97438 * 9 8 7 43 43 H 1.08003 * 120.00178 * 180.02562 * 10 9 8 44 44 H 1.08999 * 109.47613 * 90.00188 * 12 11 6 45 45 H 1.09001 * 109.47478 * 209.99972 * 12 11 6 46 46 H 1.08995 * 109.47354 * 329.99814 * 12 11 6 47 47 H 0.97001 * 120.00453 * 354.62527 * 15 13 3 48 48 H 1.08999 * 110.92624 * 328.22573 * 20 18 16 49 49 H 1.09002 * 109.83302 * 205.84346 * 20 18 16 50 50 H 0.97002 * 119.99936 * 179.97438 * 25 24 22 51 51 H 1.08999 * 110.41082 * 280.80217 * 30 21 20 52 52 H 1.08999 * 110.50953 * 158.41800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9834 -0.8379 5 6 3.5640 1.4446 -0.1355 6 6 3.9495 0.8854 -1.4807 7 6 4.2703 -0.4535 -1.6065 8 6 4.6244 -0.9663 -2.8402 9 6 4.6573 -0.1404 -3.9485 10 6 4.3354 1.1977 -3.8230 11 6 3.9770 1.7098 -2.5897 12 6 3.6208 3.1677 -2.4538 13 6 1.6495 2.1134 1.2917 14 8 1.6300 1.4769 2.3238 15 7 1.3220 3.4208 1.2998 16 6 0.8353 4.0463 2.5319 17 1 0.9150 3.4360 3.4315 18 6 -0.3709 4.9808 2.4194 19 1 -0.8696 5.1012 1.4577 20 6 -1.1448 5.2795 3.7605 21 7 -0.4359 6.4374 4.3531 22 6 -0.9814 7.5223 4.9861 23 1 -2.0335 7.7396 4.8752 24 6 -0.1822 8.3428 5.7703 25 7 1.1009 8.0805 5.9019 26 14 -0.9276 9.8190 6.6388 27 1 -2.3787 9.8932 6.3319 28 1 -0.7389 9.6782 8.1050 29 1 -0.2581 11.0591 6.1704 30 6 0.9973 6.1555 4.1055 31 6 1.0364 5.5554 2.6835 32 1 1.5861 6.1039 1.9186 33 1 -0.3633 0.5964 -0.8369 34 1 -0.3634 -1.0229 -0.0982 35 1 -0.3634 0.4266 0.9350 36 1 1.8933 -0.5139 -0.8899 37 1 1.8933 -0.5138 0.8900 38 1 3.9352 2.4656 -0.0465 39 1 3.9996 0.8297 0.6521 40 1 4.2450 -1.0986 -0.7407 41 1 4.8754 -2.0121 -2.9384 42 1 4.9344 -0.5411 -4.9124 43 1 4.3606 1.8428 -4.6888 44 1 4.5199 3.7422 -2.2309 45 1 3.1843 3.5237 -3.3870 46 1 2.9006 3.2920 -1.6452 47 1 1.4123 3.9485 0.4909 48 1 -1.1026 4.4231 4.4334 49 1 -2.1800 5.5399 3.5400 50 1 1.6594 8.6541 6.4496 51 1 1.3742 5.4358 4.8322 52 1 1.5801 7.0758 4.1458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115121074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:38 Heat of formation + Delta-G solvation = 28.378579 kcal Electronic energy + Delta-G solvation = -29567.877529 eV Core-core repulsion = 25726.143299 eV Total energy + Delta-G solvation = -3841.734230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.51019 -39.55104 -38.33455 -35.55509 -34.46168 -33.22164 -32.59959 -32.01649 -30.34330 -29.15345 -27.26048 -26.98855 -25.74773 -24.76972 -23.03772 -22.21020 -21.45489 -20.76532 -20.45898 -19.60300 -19.26895 -17.39751 -16.87851 -16.59098 -16.23235 -15.84091 -15.40308 -14.98265 -14.74594 -14.46714 -14.18042 -13.96455 -13.57422 -13.50099 -13.42909 -13.24310 -13.18327 -12.96349 -12.71770 -12.53345 -12.36102 -12.23324 -11.99855 -11.53045 -11.42967 -11.32630 -11.28267 -11.21624 -11.03924 -11.02752 -10.89201 -10.85909 -10.31497 -10.19479 -10.10616 -9.78281 -9.65490 -9.20790 -9.05684 -8.83326 -8.74229 -8.30294 -6.87192 -5.78845 -3.16858 1.04599 1.10353 2.65260 3.13781 3.37182 3.42950 3.45399 3.48128 4.33082 4.35096 4.43822 4.46354 4.58333 4.63185 4.72675 4.81576 4.83564 5.02047 5.09514 5.10981 5.19921 5.27227 5.32984 5.33710 5.36832 5.40210 5.43646 5.46687 5.54571 5.59005 5.63670 5.69277 5.74327 5.82795 5.85561 5.88361 5.92140 6.09270 6.14350 6.19171 6.20548 6.23231 6.27576 6.38644 6.52618 6.68308 6.73379 6.83741 6.89167 7.36453 7.56576 7.60809 7.73253 8.23109 8.31659 9.10938 9.72598 10.49369 11.33116 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.002052 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.405752 B =13641.754491 C =14263.115463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.098 4.098 4 H 0.089 0.911 5 C -0.073 4.073 6 C -0.076 4.076 7 C -0.109 4.109 8 C -0.126 4.126 9 C -0.121 4.121 10 C -0.120 4.120 11 C -0.080 4.080 12 C -0.122 4.122 13 C 0.521 3.479 14 O -0.535 6.535 15 N -0.699 5.699 16 C 0.092 3.908 17 H 0.130 0.870 18 C -0.187 4.187 19 H 0.105 0.895 20 C 0.158 3.842 21 N -0.594 5.594 22 C -0.224 4.224 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.917 5.917 26 Si 0.915 3.085 27 H -0.279 1.279 28 H -0.289 1.289 29 H -0.290 1.290 30 C 0.180 3.820 31 C -0.179 4.179 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.031 0.969 49 H 0.049 0.951 50 H 0.254 0.746 51 H 0.023 0.977 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -16.364 -21.372 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.120 4.120 4 H 0.107 0.893 5 C -0.110 4.110 6 C -0.077 4.077 7 C -0.127 4.127 8 C -0.144 4.144 9 C -0.139 4.139 10 C -0.138 4.138 11 C -0.080 4.080 12 C -0.178 4.178 13 C 0.307 3.693 14 O -0.411 6.411 15 N -0.347 5.347 16 C -0.013 4.013 17 H 0.148 0.852 18 C -0.208 4.208 19 H 0.123 0.877 20 C 0.031 3.969 21 N -0.317 5.317 22 C -0.353 4.353 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.563 5.563 26 Si 0.745 3.255 27 H -0.204 1.204 28 H -0.216 1.216 29 H -0.217 1.217 30 C 0.054 3.946 31 C -0.201 4.201 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.230 0.770 48 H 0.048 0.952 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.041 0.959 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.466 -16.601 -20.426 27.104 hybrid contribution -0.233 1.068 -0.225 1.116 sum 6.233 -15.533 -20.651 26.582 Atomic orbital electron populations 1.21804 0.95569 1.01773 1.02079 1.21485 0.96211 0.93939 1.03055 1.21374 0.96474 0.98376 0.95766 0.89300 1.20541 0.93533 1.02442 0.94511 1.19629 0.99800 0.93675 0.94548 1.21091 0.99188 0.94711 0.97736 1.21122 1.00593 0.99779 0.92872 1.21118 1.00306 0.93893 0.98620 1.21021 1.00333 0.95521 0.96930 1.19798 0.99244 0.96098 0.92907 1.20902 1.02053 0.91985 1.02873 1.20508 0.76434 0.81645 0.90689 1.90694 1.52254 1.64092 1.34078 1.45496 1.66208 1.09947 1.13031 1.21902 0.99812 0.91193 0.88418 0.85194 1.25095 0.91458 1.03799 1.00491 0.87686 1.21694 0.94660 0.90855 0.89685 1.45127 1.01498 1.19257 1.65813 1.19055 0.94125 1.01014 1.21058 0.90433 1.24944 0.96140 1.00203 0.99051 1.69828 1.04164 1.39520 1.42807 0.86006 0.78254 0.81926 0.79334 1.20374 1.21589 1.21697 1.21233 0.87258 0.99451 0.86686 1.24665 0.99426 0.92790 1.03189 0.88212 0.92989 0.92533 0.92244 0.90932 0.90533 0.90191 0.89907 0.85901 0.86204 0.86295 0.86184 0.90849 0.91391 0.91264 0.76969 0.95176 0.93214 0.93545 0.95944 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.64 37.16 0.36 -1.20 16 2 C -0.11 -1.07 4.96 -26.73 -0.13 -1.20 16 3 C -0.10 -0.96 1.92 -91.77 -0.18 -1.14 16 4 H 0.09 0.74 6.99 -51.93 -0.36 0.38 16 5 C -0.07 -0.66 4.11 -27.88 -0.11 -0.77 16 6 C -0.08 -0.66 4.57 -104.63 -0.48 -1.14 16 7 C -0.11 -0.89 8.21 -39.58 -0.33 -1.22 16 8 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 9 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 10 C -0.12 -0.92 9.70 -39.58 -0.38 -1.30 16 11 C -0.08 -0.66 5.88 -104.63 -0.62 -1.27 16 12 C -0.12 -0.82 9.22 36.00 0.33 -0.49 16 13 C 0.52 7.03 5.96 -10.99 -0.07 6.96 16 14 O -0.54 -9.40 15.56 5.56 0.09 -9.31 16 15 N -0.70 -9.18 5.56 -53.81 -0.30 -9.48 16 16 C 0.09 1.56 5.93 -67.93 -0.40 1.15 16 17 H 0.13 2.52 7.39 -51.93 -0.38 2.14 16 18 C -0.19 -3.31 7.34 -87.38 -0.64 -3.95 16 19 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 20 C 0.16 3.35 7.09 -0.58 0.00 3.35 16 21 N -0.59 -15.24 3.39 -166.73 -0.56 -15.81 16 22 C -0.22 -6.23 10.37 -15.06 -0.16 -6.39 16 23 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 24 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 25 N -0.92 -26.70 10.57 55.49 0.59 -26.11 16 26 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 C 0.18 4.34 5.78 -2.41 -0.01 4.32 16 31 C -0.18 -3.37 6.98 -89.22 -0.62 -4.00 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.73 7.43 -51.93 -0.39 0.34 16 36 H 0.07 0.63 6.19 -51.93 -0.32 0.31 16 37 H 0.08 0.85 7.67 -51.93 -0.40 0.45 16 38 H 0.08 0.70 7.01 -51.93 -0.36 0.34 16 39 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 46 H 0.07 0.45 5.46 -51.93 -0.28 0.17 16 47 H 0.40 4.08 8.82 -40.82 -0.36 3.72 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.10 2.74 6.22 -51.93 -0.32 2.41 16 LS Contribution 412.02 15.07 6.21 6.21 Total: -1.00 -32.03 412.02 -11.98 -44.01 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.64 Total: 4.82 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -4.33 Total: -11.17 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.28 Total: -51.40 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.03 -11.98 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115121074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.385 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds