Wall clock time and date at job start Wed Apr 1 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46897 * 2 1 4 4 H 1.09002 * 109.46881 * 305.38173 * 3 2 1 5 5 C 1.53002 * 109.46588 * 185.38808 * 3 2 1 6 6 C 1.50701 * 109.47326 * 64.99945 * 5 3 2 7 7 C 1.38255 * 119.99611 * 264.99577 * 6 5 3 8 8 C 1.38215 * 119.99766 * 180.02562 * 7 6 5 9 9 C 1.38262 * 119.99806 * 359.97438 * 8 7 6 10 10 C 1.38206 * 120.00222 * 359.96197 * 9 8 7 11 11 C 1.38210 * 119.99894 * 84.72514 * 6 5 3 12 12 C 1.50694 * 120.00290 * 359.97438 * 11 6 5 13 13 C 1.50695 * 109.47458 * 65.38757 * 3 2 1 14 14 O 1.21277 * 120.00007 * 35.23847 * 13 3 2 15 15 N 1.34777 * 119.99835 * 215.24159 * 13 3 2 16 16 C 1.46500 * 120.00038 * 174.89891 * 15 13 3 17 17 H 1.09004 * 115.51446 * 9.31243 * 16 15 13 18 18 C 1.52997 * 117.44609 * 223.96473 * 16 15 13 19 19 H 1.08995 * 119.53874 * 4.12143 * 18 16 15 20 20 C 1.57692 * 116.10965 * 161.63995 * 18 16 15 21 21 N 1.48139 * 104.67798 * 87.30969 * 20 18 16 22 22 C 1.36940 * 127.84005 * 139.77070 * 21 20 18 23 23 H 1.07995 * 120.00490 * 343.80544 * 22 21 20 24 24 C 1.38819 * 119.99935 * 163.80756 * 22 21 20 25 25 N 1.31617 * 119.99911 * 0.22208 * 24 22 21 26 26 Si 1.86792 * 119.99897 * 180.22289 * 24 22 21 27 27 H 1.48502 * 109.47340 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47175 * 119.99957 * 26 24 22 29 29 H 1.48503 * 109.47341 * 239.99674 * 26 24 22 30 30 C 1.48147 * 104.32258 * 319.77207 * 21 20 18 31 31 C 1.52997 * 117.44292 * 154.72053 * 16 15 13 32 32 H 1.08999 * 119.53951 * 355.88915 * 31 16 15 33 33 H 1.09004 * 109.46991 * 54.52370 * 1 2 3 34 34 H 1.08997 * 109.47428 * 174.51903 * 1 2 3 35 35 H 1.09004 * 109.47474 * 294.52618 * 1 2 3 36 36 H 1.08999 * 109.47151 * 239.99441 * 2 1 3 37 37 H 1.09002 * 109.46662 * 119.99814 * 2 1 3 38 38 H 1.09003 * 109.46677 * 184.99683 * 5 3 2 39 39 H 1.08998 * 109.47407 * 304.99221 * 5 3 2 40 40 H 1.07993 * 120.00320 * 359.97438 * 7 6 5 41 41 H 1.07997 * 119.99763 * 179.97438 * 8 7 6 42 42 H 1.07998 * 119.99493 * 179.97438 * 9 8 7 43 43 H 1.08003 * 120.00178 * 180.02562 * 10 9 8 44 44 H 1.08999 * 109.47613 * 90.00188 * 12 11 6 45 45 H 1.09001 * 109.47478 * 209.99972 * 12 11 6 46 46 H 1.08995 * 109.47354 * 329.99814 * 12 11 6 47 47 H 0.97001 * 120.00453 * 354.62527 * 15 13 3 48 48 H 1.08999 * 110.92624 * 328.22573 * 20 18 16 49 49 H 1.09002 * 109.83302 * 205.84346 * 20 18 16 50 50 H 0.97002 * 119.99936 * 179.97438 * 25 24 22 51 51 H 1.08999 * 110.41082 * 280.80217 * 30 21 20 52 52 H 1.08999 * 110.50953 * 158.41800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9834 -0.8379 5 6 3.5640 1.4446 -0.1355 6 6 3.9495 0.8854 -1.4807 7 6 4.2703 -0.4535 -1.6065 8 6 4.6244 -0.9663 -2.8402 9 6 4.6573 -0.1404 -3.9485 10 6 4.3354 1.1977 -3.8230 11 6 3.9770 1.7098 -2.5897 12 6 3.6208 3.1677 -2.4538 13 6 1.6495 2.1134 1.2917 14 8 1.6300 1.4769 2.3238 15 7 1.3220 3.4208 1.2998 16 6 0.8353 4.0463 2.5319 17 1 0.9150 3.4360 3.4315 18 6 -0.3709 4.9808 2.4194 19 1 -0.8696 5.1012 1.4577 20 6 -1.1448 5.2795 3.7605 21 7 -0.4359 6.4374 4.3531 22 6 -0.9814 7.5223 4.9861 23 1 -2.0335 7.7396 4.8752 24 6 -0.1822 8.3428 5.7703 25 7 1.1009 8.0805 5.9019 26 14 -0.9276 9.8190 6.6388 27 1 -2.3787 9.8932 6.3319 28 1 -0.7389 9.6782 8.1050 29 1 -0.2581 11.0591 6.1704 30 6 0.9973 6.1555 4.1055 31 6 1.0364 5.5554 2.6835 32 1 1.5861 6.1039 1.9186 33 1 -0.3633 0.5964 -0.8369 34 1 -0.3634 -1.0229 -0.0982 35 1 -0.3634 0.4266 0.9350 36 1 1.8933 -0.5139 -0.8899 37 1 1.8933 -0.5138 0.8900 38 1 3.9352 2.4656 -0.0465 39 1 3.9996 0.8297 0.6521 40 1 4.2450 -1.0986 -0.7407 41 1 4.8754 -2.0121 -2.9384 42 1 4.9344 -0.5411 -4.9124 43 1 4.3606 1.8428 -4.6888 44 1 4.5199 3.7422 -2.2309 45 1 3.1843 3.5237 -3.3870 46 1 2.9006 3.2920 -1.6452 47 1 1.4123 3.9485 0.4909 48 1 -1.1026 4.4231 4.4334 49 1 -2.1800 5.5399 3.5400 50 1 1.6594 8.6541 6.4496 51 1 1.3742 5.4358 4.8322 52 1 1.5801 7.0758 4.1458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115121074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:35 Heat of formation + Delta-G solvation = 11.596603 kcal Electronic energy + Delta-G solvation = -29568.605250 eV Core-core repulsion = 25726.143299 eV Total energy + Delta-G solvation = -3842.461951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.47929 -40.48494 -39.73139 -36.46050 -36.03544 -34.28733 -33.79145 -32.64736 -32.13666 -29.93097 -28.77954 -27.88515 -27.51484 -25.61898 -24.18380 -22.87761 -22.77429 -21.96876 -21.54001 -20.90021 -20.62355 -18.87815 -18.38568 -17.59655 -17.17166 -16.75891 -16.45493 -16.19419 -15.91085 -15.57853 -15.37188 -14.96709 -14.87939 -14.64655 -14.60193 -14.15348 -14.00640 -13.97341 -13.78428 -13.67460 -13.24292 -13.15621 -13.03925 -12.95848 -12.94014 -12.74995 -12.67339 -12.15844 -12.06377 -11.96113 -11.93653 -11.88455 -11.81206 -11.78760 -11.68092 -11.61359 -10.95652 -10.79159 -10.63352 -9.70096 -9.61585 -9.40002 -8.92451 -7.90021 -5.30946 0.47391 0.54871 1.46531 1.47824 1.54587 1.58586 1.98827 2.47560 2.85966 2.91483 3.28610 3.49933 3.63026 3.71958 3.83511 3.95488 4.01146 4.02051 4.04207 4.08850 4.16752 4.24868 4.28627 4.32953 4.44636 4.51108 4.53673 4.56201 4.63760 4.75839 4.82538 4.85985 4.87479 4.91412 4.97320 4.97499 4.98655 5.04335 5.11958 5.24569 5.27756 5.28475 5.35053 5.41362 5.43109 5.46363 5.56121 5.66312 5.68262 5.69464 5.81245 6.19378 6.19763 6.54193 7.00553 7.24244 7.66479 8.44672 9.21331 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.002052 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.405752 B =13641.754491 C =14263.115463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.085 4.085 4 H 0.113 0.887 5 C -0.067 4.067 6 C -0.087 4.087 7 C -0.121 4.121 8 C -0.133 4.133 9 C -0.126 4.126 10 C -0.129 4.129 11 C -0.089 4.089 12 C -0.123 4.123 13 C 0.521 3.479 14 O -0.579 6.579 15 N -0.684 5.684 16 C 0.113 3.887 17 H 0.102 0.898 18 C -0.165 4.165 19 H 0.140 0.860 20 C 0.149 3.851 21 N -0.618 5.618 22 C -0.238 4.238 23 H 0.084 0.916 24 C -0.065 4.065 25 N -0.948 5.948 26 Si 0.983 3.017 27 H -0.263 1.263 28 H -0.293 1.293 29 H -0.289 1.289 30 C 0.183 3.817 31 C -0.180 4.180 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.416 0.584 48 H 0.021 0.979 49 H 0.062 0.938 50 H 0.250 0.750 51 H -0.009 1.009 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -16.557 -24.577 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.107 4.107 4 H 0.131 0.869 5 C -0.105 4.105 6 C -0.087 4.087 7 C -0.139 4.139 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.089 4.089 12 C -0.180 4.180 13 C 0.310 3.690 14 O -0.458 6.458 15 N -0.334 5.334 16 C 0.006 3.994 17 H 0.119 0.881 18 C -0.187 4.187 19 H 0.158 0.842 20 C 0.023 3.977 21 N -0.341 5.341 22 C -0.367 4.367 23 H 0.102 0.898 24 C -0.258 4.258 25 N -0.596 5.596 26 Si 0.811 3.189 27 H -0.188 1.188 28 H -0.220 1.220 29 H -0.216 1.216 30 C 0.057 3.943 31 C -0.201 4.201 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.253 0.747 48 H 0.039 0.961 49 H 0.080 0.920 50 H 0.059 0.941 51 H 0.009 0.991 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.842 -16.808 -23.688 29.627 hybrid contribution -0.018 1.017 0.774 1.278 sum 5.824 -15.791 -22.913 28.431 Atomic orbital electron populations 1.21796 0.95572 1.02523 1.01184 1.21463 0.96132 0.93844 1.02912 1.21351 0.97168 0.98139 0.93996 0.86891 1.20463 0.92723 1.02513 0.94779 1.19583 1.00896 0.94009 0.94218 1.21239 0.99492 0.94802 0.98318 1.21369 1.00326 1.00755 0.92671 1.21423 0.99621 0.93911 0.99414 1.21292 1.00062 0.96001 0.97324 1.20003 0.99173 0.96748 0.92933 1.20950 1.02257 0.91152 1.03620 1.21210 0.75115 0.81282 0.91426 1.90687 1.53983 1.65036 1.36073 1.45316 1.65690 1.10079 1.12342 1.21404 0.99042 0.89719 0.89230 0.88060 1.25007 0.90480 1.03220 0.99944 0.84215 1.21828 0.95578 0.89193 0.91071 1.45415 1.02445 1.20029 1.66259 1.19446 0.94553 1.01606 1.21062 0.89829 1.25814 0.96594 1.03277 1.00121 1.70048 1.05396 1.40633 1.43564 0.84942 0.78168 0.78285 0.77493 1.18763 1.22046 1.21580 1.20945 0.86479 0.97500 0.89369 1.24337 1.01164 0.94307 1.00320 0.85784 0.91493 0.91570 0.94889 0.89302 0.92381 0.89826 0.91166 0.85664 0.84675 0.84460 0.84643 0.90771 0.90248 0.90975 0.74660 0.96109 0.92002 0.94081 0.99094 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.64 71.98 0.69 -2.14 16 2 C -0.11 -1.93 4.96 30.60 0.15 -1.78 16 3 C -0.09 -1.51 1.92 -11.54 -0.02 -1.53 16 4 H 0.11 1.50 6.99 -2.39 -0.02 1.48 16 5 C -0.07 -1.13 4.11 29.85 0.12 -1.00 16 6 C -0.09 -1.34 4.57 -19.87 -0.09 -1.43 16 7 C -0.12 -1.79 8.21 22.27 0.18 -1.60 16 8 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 9 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 10 C -0.13 -1.63 9.70 22.27 0.22 -1.42 16 11 C -0.09 -1.23 5.88 -19.87 -0.12 -1.35 16 12 C -0.12 -1.32 9.22 71.23 0.66 -0.67 16 13 C 0.52 13.52 5.96 87.66 0.52 14.04 16 14 O -0.58 -20.61 15.56 -3.02 -0.05 -20.66 16 15 N -0.68 -16.61 5.56 -442.54 -2.46 -19.07 16 16 C 0.11 3.73 5.93 44.99 0.27 3.99 16 17 H 0.10 4.04 7.39 -2.38 -0.02 4.02 16 18 C -0.17 -5.56 7.34 -8.70 -0.06 -5.62 16 19 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 20 C 0.15 6.31 7.09 87.73 0.62 6.93 16 21 N -0.62 -32.30 3.39 -681.42 -2.31 -34.61 16 22 C -0.24 -13.38 10.37 84.03 0.87 -12.51 16 23 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 24 C -0.06 -3.69 5.48 84.86 0.46 -3.22 16 25 N -0.95 -57.19 10.57 21.65 0.23 -56.96 16 26 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 27 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 30 C 0.18 9.17 5.78 86.54 0.50 9.67 16 31 C -0.18 -6.65 6.98 -9.88 -0.07 -6.72 16 32 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.03 0.78 7.43 -2.38 -0.02 0.76 16 36 H 0.09 1.36 6.19 -2.39 -0.01 1.34 16 37 H 0.06 1.28 7.67 -2.39 -0.02 1.27 16 38 H 0.08 1.33 7.01 -2.39 -0.02 1.32 16 39 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 40 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 43 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 46 H 0.07 0.70 5.46 -2.39 -0.01 0.69 16 47 H 0.42 7.09 8.82 -92.71 -0.82 6.27 16 48 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 51 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 52 H 0.07 3.95 6.22 -2.39 -0.01 3.93 16 Total: -1.00 -72.16 412.02 2.89 -69.27 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.09 Total: 23.65 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.36 Total: -9.16 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -4.54 Total: -110.64 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.16 2.89 -69.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115121074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.863 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds