Wall clock time and date at job start Wed Apr 1 2020 02:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 H 1.08996 * 109.47222 * 305.08312 * 3 2 1 5 5 C 1.53008 * 109.46794 * 65.08315 * 3 2 1 6 6 C 1.50693 * 109.46961 * 186.72937 * 5 3 2 7 7 C 1.38253 * 119.99914 * 259.18420 * 6 5 3 8 8 C 1.38214 * 120.00216 * 180.02562 * 7 6 5 9 9 C 1.38264 * 119.99826 * 359.95372 * 8 7 6 10 10 C 1.38210 * 119.99867 * 0.02562 * 9 8 7 11 11 C 1.38220 * 120.00433 * 78.90976 * 6 5 3 12 12 C 1.50697 * 119.99601 * 359.97438 * 11 6 5 13 13 C 1.50690 * 109.47330 * 185.07983 * 3 2 1 14 14 O 1.21283 * 120.00223 * 240.00343 * 13 3 2 15 15 N 1.34779 * 120.00090 * 60.00426 * 13 3 2 16 16 C 1.46494 * 120.00248 * 180.02562 * 15 13 3 17 17 H 1.08999 * 115.51910 * 9.41353 * 16 15 13 18 18 C 1.53000 * 117.40960 * 224.05629 * 16 15 13 19 19 H 1.09009 * 119.53453 * 4.10425 * 18 16 15 20 20 C 1.57688 * 116.11474 * 161.62031 * 18 16 15 21 21 N 1.48143 * 104.67313 * 87.31202 * 20 18 16 22 22 C 1.36939 * 127.83604 * 139.77793 * 21 20 18 23 23 H 1.07998 * 120.00195 * 345.09586 * 22 21 20 24 24 C 1.38812 * 119.99617 * 165.10541 * 22 21 20 25 25 N 1.31620 * 120.00151 * 350.41584 * 24 22 21 26 26 Si 1.86803 * 119.99902 * 170.41841 * 24 22 21 27 27 H 1.48503 * 109.47173 * 59.99612 * 26 24 22 28 28 H 1.48501 * 109.47153 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47181 * 300.00048 * 26 24 22 30 30 C 1.48144 * 104.32597 * 319.77273 * 21 20 18 31 31 C 1.53007 * 117.44384 * 154.82906 * 16 15 13 32 32 H 1.08994 * 119.53576 * 355.83642 * 31 16 15 33 33 H 1.09005 * 109.46885 * 176.82923 * 1 2 3 34 34 H 1.08990 * 109.47133 * 296.83319 * 1 2 3 35 35 H 1.09003 * 109.46743 * 56.83579 * 1 2 3 36 36 H 1.08999 * 109.47075 * 240.00001 * 2 1 3 37 37 H 1.09003 * 109.46856 * 120.00566 * 2 1 3 38 38 H 1.09003 * 109.47041 * 306.72647 * 5 3 2 39 39 H 1.09000 * 109.47445 * 66.72493 * 5 3 2 40 40 H 1.08003 * 120.00519 * 359.97438 * 7 6 5 41 41 H 1.08001 * 120.00343 * 179.97438 * 8 7 6 42 42 H 1.08004 * 119.99396 * 180.02562 * 9 8 7 43 43 H 1.07998 * 119.99744 * 179.97438 * 10 9 8 44 44 H 1.09001 * 109.47250 * 93.72984 * 12 11 6 45 45 H 1.09007 * 109.47108 * 213.72736 * 12 11 6 46 46 H 1.09004 * 109.47283 * 333.72901 * 12 11 6 47 47 H 0.97004 * 119.99565 * 359.97438 * 15 13 3 48 48 H 1.08996 * 110.92258 * 328.23332 * 20 18 16 49 49 H 1.09008 * 109.93627 * 205.89409 * 20 18 16 50 50 H 0.97000 * 119.99629 * 180.02562 * 25 24 22 51 51 H 1.08996 * 110.40830 * 280.80435 * 30 21 20 52 52 H 1.08997 * 110.40874 * 158.36930 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6043 1.9819 -0.8409 5 6 1.6371 2.1259 1.3083 6 6 1.9927 3.5887 1.2412 7 6 3.1345 4.0520 1.8681 8 6 3.4604 5.3937 1.8070 9 6 2.6451 6.2725 1.1181 10 6 1.5038 5.8093 0.4910 11 6 1.1804 4.4664 0.5481 12 6 -0.0606 3.9602 -0.1409 13 6 3.5417 1.4443 -0.1258 14 8 4.2226 1.9431 0.7451 15 7 4.1282 0.8917 -1.2062 16 6 5.5880 0.8930 -1.3282 17 1 6.1332 1.2117 -0.4398 18 6 6.1807 1.2627 -2.6895 19 1 5.5184 1.5754 -3.4969 20 6 7.6977 1.6930 -2.6923 21 7 8.4478 0.4228 -2.8285 22 6 9.5657 0.1842 -3.5826 23 1 9.8611 0.8868 -4.3477 24 6 10.3189 -0.9611 -3.3637 25 7 10.0743 -1.7194 -2.3161 26 14 11.6798 -1.4259 -4.5560 27 1 12.6884 -0.3370 -4.6049 28 1 12.3293 -2.6814 -4.1007 29 1 11.1041 -1.6285 -5.9098 30 6 7.7144 -0.5305 -1.9637 31 6 6.2243 -0.1973 -2.1927 32 1 5.5947 -0.9722 -2.6298 33 1 -0.3633 -1.0261 -0.0568 34 1 -0.3633 0.4638 0.9169 35 1 -0.3633 0.5622 -0.8603 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 0.5626 2.0197 1.4577 39 1 2.1671 1.6608 2.1395 40 1 3.7714 3.3656 2.4063 41 1 4.3522 5.7557 2.2971 42 1 2.9000 7.3209 1.0700 43 1 0.8667 6.4958 -0.0467 44 1 -0.9166 4.0710 0.5247 45 1 -0.2312 4.5356 -1.0510 46 1 0.0684 2.9081 -0.3951 47 1 3.5836 0.4925 -1.9026 48 1 7.9623 2.1927 -1.7605 49 1 7.8974 2.3454 -3.5425 50 1 10.6010 -2.5195 -2.1630 51 1 7.9816 -0.3781 -0.9180 52 1 7.9251 -1.5566 -2.2651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115121076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:44 Heat of formation + Delta-G solvation = 32.729401 kcal Electronic energy + Delta-G solvation = -29994.647668 eV Core-core repulsion = 26153.102104 eV Total energy + Delta-G solvation = -3841.545564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.47352 -39.25265 -38.22276 -35.83065 -34.46768 -32.97575 -32.55640 -31.82414 -30.28217 -28.78076 -27.06856 -26.98633 -25.88206 -25.07057 -22.51309 -22.05239 -21.40272 -20.72751 -20.42058 -19.65408 -19.27790 -17.32649 -16.84175 -16.62078 -16.14114 -15.49253 -15.29889 -14.77836 -14.62931 -14.48280 -14.33431 -14.00332 -13.66289 -13.27057 -13.20914 -13.05507 -12.98463 -12.77605 -12.72096 -12.40451 -12.20540 -12.16211 -12.06472 -11.76086 -11.50098 -11.46085 -11.36513 -11.00874 -10.97295 -10.84293 -10.81529 -10.66615 -10.34807 -10.19500 -10.14965 -9.73147 -9.59491 -9.18511 -8.73601 -8.67104 -8.55712 -8.26433 -6.87668 -5.79715 -3.13667 1.34441 1.46788 2.71944 3.19006 3.39113 3.43248 3.44558 3.76314 4.33955 4.45488 4.50542 4.52656 4.59195 4.75876 4.84929 4.98045 4.98655 5.09460 5.16010 5.18660 5.20638 5.26079 5.38604 5.39338 5.39947 5.42338 5.50310 5.56370 5.59237 5.67266 5.69340 5.72394 5.75700 5.80870 5.86734 5.88568 5.97043 6.10966 6.17748 6.20408 6.29079 6.49809 6.53185 6.60228 6.69884 6.72650 6.86160 6.90039 7.07627 7.35488 7.52788 7.64923 7.71325 8.20399 8.37920 9.10794 9.73604 10.50661 11.34531 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.002404 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.269660 B =11645.607440 C =12650.224245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.104 4.104 4 H 0.098 0.902 5 C -0.062 4.062 6 C -0.085 4.085 7 C -0.073 4.073 8 C -0.132 4.132 9 C -0.121 4.121 10 C -0.131 4.131 11 C -0.088 4.088 12 C -0.120 4.120 13 C 0.518 3.482 14 O -0.530 6.530 15 N -0.699 5.699 16 C 0.097 3.903 17 H 0.130 0.870 18 C -0.186 4.186 19 H 0.105 0.895 20 C 0.158 3.842 21 N -0.593 5.593 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.915 5.915 26 Si 0.913 3.087 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.186 3.814 31 C -0.181 4.181 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.396 0.604 48 H 0.030 0.970 49 H 0.049 0.951 50 H 0.255 0.745 51 H 0.025 0.975 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.167 8.480 6.053 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.126 4.126 4 H 0.116 0.884 5 C -0.099 4.099 6 C -0.085 4.085 7 C -0.091 4.091 8 C -0.150 4.150 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.088 4.088 12 C -0.177 4.177 13 C 0.305 3.695 14 O -0.406 6.406 15 N -0.348 5.348 16 C -0.009 4.009 17 H 0.148 0.852 18 C -0.208 4.208 19 H 0.123 0.877 20 C 0.031 3.969 21 N -0.316 5.316 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.562 5.562 26 Si 0.743 3.257 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.211 1.211 30 C 0.060 3.940 31 C -0.202 4.202 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.230 0.770 48 H 0.047 0.953 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.043 0.957 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.432 8.659 6.654 25.852 hybrid contribution 0.465 -0.403 -1.175 1.327 sum -22.967 8.256 5.479 25.013 Atomic orbital electron populations 1.21850 0.95020 1.02093 1.02125 1.21544 0.96550 0.94235 1.03227 1.21472 0.92616 0.98036 1.00432 0.88411 1.20473 1.01312 0.91421 0.96711 1.19617 0.95453 0.94845 0.98577 1.21225 0.95184 0.95001 0.97714 1.21178 0.99713 0.93858 1.00269 1.21088 0.95181 0.99440 0.98148 1.20893 0.97796 0.94924 1.01269 1.19725 0.96916 0.93484 0.98713 1.20914 0.95110 1.01790 0.99837 1.20504 0.90067 0.77425 0.81536 1.90666 1.65406 1.44429 1.40057 1.45438 1.06762 1.59602 1.22950 1.21851 0.79411 1.03497 0.96154 0.85214 1.25074 0.98976 1.00054 0.96699 0.87734 1.21680 0.86839 0.89927 0.98445 1.45117 1.29018 1.04497 1.52975 1.18954 0.99794 1.06223 1.10602 0.90558 1.24887 0.98746 0.99012 0.97619 1.69889 1.42454 1.16755 1.27059 0.86184 0.81467 0.77690 0.80320 1.20964 1.21531 1.21103 1.21064 0.82610 0.96957 0.93412 1.24624 1.00727 0.91647 1.03199 0.88246 0.92279 0.92186 0.92484 0.91241 0.90983 0.90152 0.90170 0.85102 0.86439 0.86607 0.86641 0.91380 0.91773 0.91128 0.77033 0.95256 0.93229 0.93481 0.95697 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.60 37.16 0.36 -0.52 16 2 C -0.12 -0.88 5.35 -26.73 -0.14 -1.03 16 3 C -0.10 -0.97 1.81 -91.77 -0.17 -1.14 16 4 H 0.10 0.83 6.45 -51.93 -0.33 0.50 16 5 C -0.06 -0.59 3.74 -27.88 -0.10 -0.69 16 6 C -0.08 -0.98 4.66 -104.63 -0.49 -1.46 16 7 C -0.07 -0.96 7.96 -39.58 -0.32 -1.27 16 8 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 9 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 10 C -0.13 -1.37 9.72 -39.59 -0.38 -1.76 16 11 C -0.09 -0.92 5.84 -104.63 -0.61 -1.53 16 12 C -0.12 -0.89 9.25 36.00 0.33 -0.56 16 13 C 0.52 6.94 6.91 -10.99 -0.08 6.86 16 14 O -0.53 -8.84 12.21 5.56 0.07 -8.77 16 15 N -0.70 -9.29 5.42 -53.81 -0.29 -9.58 16 16 C 0.10 1.64 5.92 -67.93 -0.40 1.24 16 17 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 18 C -0.19 -3.37 7.34 -87.38 -0.64 -4.01 16 19 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 20 C 0.16 3.41 7.10 -0.58 0.00 3.41 16 21 N -0.59 -15.35 3.38 -166.74 -0.56 -15.92 16 22 C -0.23 -6.38 10.35 -15.06 -0.16 -6.54 16 23 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 24 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 25 N -0.92 -26.88 10.85 55.49 0.60 -26.28 16 26 Si 0.91 21.96 29.56 -169.99 -5.03 16.94 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 C 0.19 4.50 5.71 -2.41 -0.01 4.48 16 31 C -0.18 -3.42 6.98 -89.21 -0.62 -4.04 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.32 6.58 -51.93 -0.34 -0.02 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.50 7.42 -51.93 -0.39 0.11 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.60 5.49 -51.93 -0.28 0.31 16 39 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 40 H 0.13 1.83 6.92 -52.48 -0.36 1.46 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 46 H 0.07 0.47 4.94 -51.93 -0.26 0.21 16 47 H 0.40 4.21 8.18 -40.82 -0.33 3.87 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 50 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.09 2.45 6.48 -51.93 -0.34 2.12 16 LS Contribution 405.81 15.07 6.12 6.12 Total: -1.00 -32.09 405.81 -11.89 -43.98 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.47 Total: 6.05 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -4.33 Total: -12.53 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.25 Total: -51.77 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.09 -11.89 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115121076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.707 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds