Wall clock time and date at job start Wed Apr 1 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 H 1.08996 * 109.47222 * 305.08312 * 3 2 1 5 5 C 1.53008 * 109.46794 * 65.08315 * 3 2 1 6 6 C 1.50693 * 109.46961 * 186.72937 * 5 3 2 7 7 C 1.38253 * 119.99914 * 259.18420 * 6 5 3 8 8 C 1.38214 * 120.00216 * 180.02562 * 7 6 5 9 9 C 1.38264 * 119.99826 * 359.95372 * 8 7 6 10 10 C 1.38210 * 119.99867 * 0.02562 * 9 8 7 11 11 C 1.38220 * 120.00433 * 78.90976 * 6 5 3 12 12 C 1.50697 * 119.99601 * 359.97438 * 11 6 5 13 13 C 1.50690 * 109.47330 * 185.07983 * 3 2 1 14 14 O 1.21283 * 120.00223 * 240.00343 * 13 3 2 15 15 N 1.34779 * 120.00090 * 60.00426 * 13 3 2 16 16 C 1.46494 * 120.00248 * 180.02562 * 15 13 3 17 17 H 1.08999 * 115.51910 * 9.41353 * 16 15 13 18 18 C 1.53000 * 117.40960 * 224.05629 * 16 15 13 19 19 H 1.09009 * 119.53453 * 4.10425 * 18 16 15 20 20 C 1.57688 * 116.11474 * 161.62031 * 18 16 15 21 21 N 1.48143 * 104.67313 * 87.31202 * 20 18 16 22 22 C 1.36939 * 127.83604 * 139.77793 * 21 20 18 23 23 H 1.07998 * 120.00195 * 345.09586 * 22 21 20 24 24 C 1.38812 * 119.99617 * 165.10541 * 22 21 20 25 25 N 1.31620 * 120.00151 * 350.41584 * 24 22 21 26 26 Si 1.86803 * 119.99902 * 170.41841 * 24 22 21 27 27 H 1.48503 * 109.47173 * 59.99612 * 26 24 22 28 28 H 1.48501 * 109.47153 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47181 * 300.00048 * 26 24 22 30 30 C 1.48144 * 104.32597 * 319.77273 * 21 20 18 31 31 C 1.53007 * 117.44384 * 154.82906 * 16 15 13 32 32 H 1.08994 * 119.53576 * 355.83642 * 31 16 15 33 33 H 1.09005 * 109.46885 * 176.82923 * 1 2 3 34 34 H 1.08990 * 109.47133 * 296.83319 * 1 2 3 35 35 H 1.09003 * 109.46743 * 56.83579 * 1 2 3 36 36 H 1.08999 * 109.47075 * 240.00001 * 2 1 3 37 37 H 1.09003 * 109.46856 * 120.00566 * 2 1 3 38 38 H 1.09003 * 109.47041 * 306.72647 * 5 3 2 39 39 H 1.09000 * 109.47445 * 66.72493 * 5 3 2 40 40 H 1.08003 * 120.00519 * 359.97438 * 7 6 5 41 41 H 1.08001 * 120.00343 * 179.97438 * 8 7 6 42 42 H 1.08004 * 119.99396 * 180.02562 * 9 8 7 43 43 H 1.07998 * 119.99744 * 179.97438 * 10 9 8 44 44 H 1.09001 * 109.47250 * 93.72984 * 12 11 6 45 45 H 1.09007 * 109.47108 * 213.72736 * 12 11 6 46 46 H 1.09004 * 109.47283 * 333.72901 * 12 11 6 47 47 H 0.97004 * 119.99565 * 359.97438 * 15 13 3 48 48 H 1.08996 * 110.92258 * 328.23332 * 20 18 16 49 49 H 1.09008 * 109.93627 * 205.89409 * 20 18 16 50 50 H 0.97000 * 119.99629 * 180.02562 * 25 24 22 51 51 H 1.08996 * 110.40830 * 280.80435 * 30 21 20 52 52 H 1.08997 * 110.40874 * 158.36930 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6043 1.9819 -0.8409 5 6 1.6371 2.1259 1.3083 6 6 1.9927 3.5887 1.2412 7 6 3.1345 4.0520 1.8681 8 6 3.4604 5.3937 1.8070 9 6 2.6451 6.2725 1.1181 10 6 1.5038 5.8093 0.4910 11 6 1.1804 4.4664 0.5481 12 6 -0.0606 3.9602 -0.1409 13 6 3.5417 1.4443 -0.1258 14 8 4.2226 1.9431 0.7451 15 7 4.1282 0.8917 -1.2062 16 6 5.5880 0.8930 -1.3282 17 1 6.1332 1.2117 -0.4398 18 6 6.1807 1.2627 -2.6895 19 1 5.5184 1.5754 -3.4969 20 6 7.6977 1.6930 -2.6923 21 7 8.4478 0.4228 -2.8285 22 6 9.5657 0.1842 -3.5826 23 1 9.8611 0.8868 -4.3477 24 6 10.3189 -0.9611 -3.3637 25 7 10.0743 -1.7194 -2.3161 26 14 11.6798 -1.4259 -4.5560 27 1 12.6884 -0.3370 -4.6049 28 1 12.3293 -2.6814 -4.1007 29 1 11.1041 -1.6285 -5.9098 30 6 7.7144 -0.5305 -1.9637 31 6 6.2243 -0.1973 -2.1927 32 1 5.5947 -0.9722 -2.6298 33 1 -0.3633 -1.0261 -0.0568 34 1 -0.3633 0.4638 0.9169 35 1 -0.3633 0.5622 -0.8603 36 1 1.8934 -0.5138 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 0.5626 2.0197 1.4577 39 1 2.1671 1.6608 2.1395 40 1 3.7714 3.3656 2.4063 41 1 4.3522 5.7557 2.2971 42 1 2.9000 7.3209 1.0700 43 1 0.8667 6.4958 -0.0467 44 1 -0.9166 4.0710 0.5247 45 1 -0.2312 4.5356 -1.0510 46 1 0.0684 2.9081 -0.3951 47 1 3.5836 0.4925 -1.9026 48 1 7.9623 2.1927 -1.7605 49 1 7.8974 2.3454 -3.5425 50 1 10.6010 -2.5195 -2.1630 51 1 7.9816 -0.3781 -0.9180 52 1 7.9251 -1.5566 -2.2651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115121076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:41 Heat of formation + Delta-G solvation = 15.731441 kcal Electronic energy + Delta-G solvation = -29995.384755 eV Core-core repulsion = 26153.102104 eV Total energy + Delta-G solvation = -3842.282651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.49030 -40.43012 -39.54496 -36.66200 -36.07347 -34.32217 -33.59382 -32.66051 -32.04914 -29.53469 -28.81973 -27.87379 -27.49628 -26.10002 -23.74115 -22.85887 -22.61636 -21.99411 -21.59912 -20.92775 -20.67001 -18.87473 -18.29098 -17.69796 -17.26388 -16.74330 -16.36624 -16.11322 -15.70211 -15.58466 -15.30873 -15.13086 -14.88162 -14.69576 -14.65093 -13.98955 -13.92735 -13.77286 -13.65935 -13.41519 -13.30340 -13.19206 -12.97722 -12.86425 -12.79547 -12.78432 -12.68568 -12.46804 -12.15746 -12.06692 -12.01593 -11.87014 -11.68140 -11.65028 -11.56582 -11.39448 -10.89774 -10.74574 -10.61883 -9.67604 -9.51623 -9.36781 -8.95708 -7.93408 -5.30476 0.51089 0.60202 1.45768 1.49202 1.56070 1.64190 2.03670 2.47575 2.86674 2.92019 3.26728 3.56280 3.68005 3.76769 3.83538 3.88952 3.95535 4.05424 4.06884 4.14353 4.24148 4.27179 4.30301 4.38408 4.47114 4.50540 4.57742 4.62291 4.69200 4.80074 4.84470 4.87666 4.92160 4.94500 4.95262 5.03667 5.07925 5.09443 5.24187 5.25381 5.26063 5.31778 5.40276 5.43691 5.45456 5.54498 5.57096 5.62645 5.67840 5.74365 5.88354 6.14182 6.24974 6.59647 6.97966 7.32916 7.64895 8.43483 9.20255 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.002404 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.269660 B =11645.607440 C =12650.224245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.090 4.090 4 H 0.118 0.882 5 C -0.059 4.059 6 C -0.095 4.095 7 C -0.098 4.098 8 C -0.154 4.154 9 C -0.129 4.129 10 C -0.137 4.137 11 C -0.090 4.090 12 C -0.119 4.119 13 C 0.511 3.489 14 O -0.567 6.567 15 N -0.687 5.687 16 C 0.119 3.881 17 H 0.100 0.900 18 C -0.168 4.168 19 H 0.138 0.862 20 C 0.150 3.850 21 N -0.616 5.616 22 C -0.245 4.245 23 H 0.083 0.917 24 C -0.062 4.062 25 N -0.948 5.948 26 Si 0.984 3.016 27 H -0.276 1.276 28 H -0.293 1.293 29 H -0.274 1.274 30 C 0.190 3.810 31 C -0.179 4.179 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.414 0.586 48 H 0.017 0.983 49 H 0.060 0.940 50 H 0.251 0.749 51 H -0.007 1.007 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.623 9.067 3.859 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.136 0.864 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.117 4.117 8 C -0.172 4.172 9 C -0.147 4.147 10 C -0.155 4.155 11 C -0.090 4.090 12 C -0.175 4.175 13 C 0.299 3.701 14 O -0.445 6.445 15 N -0.337 5.337 16 C 0.011 3.989 17 H 0.118 0.882 18 C -0.189 4.189 19 H 0.156 0.844 20 C 0.024 3.976 21 N -0.340 5.340 22 C -0.373 4.373 23 H 0.100 0.900 24 C -0.256 4.256 25 N -0.596 5.596 26 Si 0.811 3.189 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.200 1.200 30 C 0.064 3.936 31 C -0.200 4.200 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.135 0.865 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.252 0.748 48 H 0.035 0.965 49 H 0.079 0.921 50 H 0.060 0.940 51 H 0.011 0.989 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.939 9.265 4.444 28.833 hybrid contribution 1.558 -0.500 -0.388 1.682 sum -25.381 8.765 4.056 27.157 Atomic orbital electron populations 1.21843 0.93064 1.02868 1.03019 1.21558 0.98154 0.92502 1.03089 1.21463 0.89025 0.99668 1.00921 0.86389 1.20503 1.02686 0.90163 0.96254 1.19842 0.95056 0.96103 0.98529 1.21206 0.96246 0.95129 0.99074 1.21327 1.00469 0.94070 1.01351 1.21354 0.95333 1.00166 0.97828 1.21278 0.97668 0.95637 1.00873 1.20112 0.97633 0.93303 0.97977 1.20990 0.93803 1.02463 1.00276 1.21390 0.91880 0.76219 0.80588 1.90684 1.66672 1.45814 1.41314 1.45272 1.04860 1.59795 1.23784 1.21332 0.81608 1.01403 0.94533 0.88204 1.24978 0.97152 0.98581 0.98217 0.84428 1.21799 0.88935 0.88672 0.98242 1.45413 1.29302 1.06418 1.52871 1.19373 1.00623 1.06432 1.10866 0.89958 1.25778 1.01391 0.99086 0.99347 1.70098 1.43583 1.17021 1.28876 0.85091 0.78497 0.77058 0.78284 1.20154 1.21915 1.19971 1.20795 0.86232 0.95255 0.91356 1.24299 0.97862 0.92925 1.04910 0.85705 0.91728 0.91721 0.91068 0.90479 0.92180 0.87323 0.92026 0.87491 0.86491 0.84843 0.84196 0.89872 0.90579 0.90074 0.74848 0.96472 0.92145 0.94026 0.98947 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.60 71.98 0.69 -0.43 16 2 C -0.12 -1.39 5.35 30.60 0.16 -1.23 16 3 C -0.09 -1.45 1.81 -11.54 -0.02 -1.47 16 4 H 0.12 1.50 6.45 -2.39 -0.02 1.49 16 5 C -0.06 -1.03 3.74 29.85 0.11 -0.92 16 6 C -0.10 -2.11 4.66 -19.87 -0.09 -2.20 16 7 C -0.10 -2.70 7.96 22.27 0.18 -2.52 16 8 C -0.15 -3.92 10.05 22.27 0.22 -3.70 16 9 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 10 C -0.14 -2.57 9.72 22.27 0.22 -2.35 16 11 C -0.09 -1.65 5.84 -19.87 -0.12 -1.77 16 12 C -0.12 -1.26 9.25 71.24 0.66 -0.60 16 13 C 0.51 13.17 6.91 87.65 0.61 13.78 16 14 O -0.57 -19.52 12.21 -3.04 -0.04 -19.55 16 15 N -0.69 -16.96 5.42 -442.54 -2.40 -19.36 16 16 C 0.12 3.98 5.92 44.99 0.27 4.25 16 17 H 0.10 4.06 7.40 -2.39 -0.02 4.04 16 18 C -0.17 -5.83 7.34 -8.70 -0.06 -5.90 16 19 H 0.14 3.95 8.14 -2.38 -0.02 3.93 16 20 C 0.15 6.50 7.10 87.72 0.62 7.13 16 21 N -0.62 -32.73 3.38 -681.44 -2.30 -35.04 16 22 C -0.24 -13.94 10.35 84.03 0.87 -13.07 16 23 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 24 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 25 N -0.95 -57.77 10.85 21.65 0.23 -57.54 16 26 Si 0.98 45.73 29.56 68.60 2.03 47.76 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 30 C 0.19 9.59 5.71 86.54 0.49 10.08 16 31 C -0.18 -6.69 6.98 -9.88 -0.07 -6.76 16 32 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.06 0.43 6.58 -2.39 -0.02 0.42 16 35 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.84 7.42 -2.39 -0.02 0.82 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 1.28 5.49 -2.39 -0.01 1.27 16 39 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 40 H 0.11 3.33 6.92 -2.91 -0.02 3.31 16 41 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.66 8.11 -2.38 -0.02 0.64 16 46 H 0.08 0.67 4.94 -2.39 -0.01 0.66 16 47 H 0.41 7.34 8.18 -92.71 -0.76 6.59 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 50 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 51 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 52 H 0.06 3.41 6.48 -2.39 -0.02 3.40 16 Total: -1.00 -74.00 405.81 3.10 -70.90 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.16 Total: 26.16 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.42 Total: -13.33 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.47 Total: -111.93 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.04 Total: -19.55 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.00 3.10 -70.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115121076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.631 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds