Wall clock time and date at job start Wed Apr 1 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 N 1.46894 * 109.47365 * 120.00430 * 2 1 3 5 5 C 1.47016 * 110.99844 * 56.04086 * 4 2 1 6 6 C 1.53103 * 109.29298 * 182.37346 * 5 4 2 7 7 O 1.43027 * 109.25318 * 303.22227 * 6 5 4 8 8 C 1.43015 * 113.77765 * 58.59866 * 7 6 5 9 9 H 1.09003 * 109.53636 * 61.31228 * 8 7 6 10 10 C 1.50700 * 109.50511 * 181.41601 * 8 7 6 11 11 O 1.21279 * 119.99986 * 4.78827 * 10 8 7 12 12 N 1.34772 * 119.99628 * 184.78517 * 10 8 7 13 13 C 1.46508 * 119.99849 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47046 * 180.02562 * 13 12 10 15 15 N 1.46899 * 109.46753 * 179.97438 * 14 13 12 16 16 C 1.46906 * 110.99762 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47082 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00012 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99831 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99623 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00325 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99829 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99966 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00147 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47285 * 89.99340 * 24 22 20 26 26 H 1.48495 * 109.47238 * 209.99963 * 24 22 20 27 27 H 1.48503 * 109.46955 * 329.99509 * 24 22 20 28 28 C 1.47009 * 111.00295 * 179.67810 * 4 2 1 29 29 H 1.09005 * 109.47199 * 299.99697 * 1 2 3 30 30 H 1.09005 * 109.47617 * 59.99429 * 1 2 3 31 31 H 1.08992 * 109.47603 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46710 * 240.00320 * 2 1 3 33 33 H 1.09001 * 109.47491 * 300.00319 * 3 2 1 34 34 H 1.09005 * 109.46761 * 60.00035 * 3 2 1 35 35 H 1.09000 * 109.47410 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.50934 * 302.33071 * 5 4 2 37 37 H 1.09003 * 109.50733 * 62.41665 * 5 4 2 38 38 H 1.08998 * 109.50917 * 63.10882 * 6 5 4 39 39 H 1.08998 * 109.50376 * 183.24332 * 6 5 4 40 40 H 0.97002 * 120.00359 * 0.02562 * 12 10 8 41 41 H 1.09003 * 109.46618 * 300.00097 * 13 12 10 42 42 H 1.08994 * 109.47285 * 59.99864 * 13 12 10 43 43 H 1.09003 * 109.47340 * 299.99470 * 14 13 12 44 44 H 1.08994 * 109.47340 * 59.99713 * 14 13 12 45 45 H 1.00892 * 111.00382 * 303.95085 * 15 14 13 46 46 H 1.08997 * 109.47679 * 300.00415 * 16 15 14 47 47 H 1.09002 * 109.46616 * 60.00180 * 16 15 14 48 48 H 0.96993 * 120.00290 * 0.02562 * 19 17 16 49 49 H 0.97003 * 120.00392 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.50528 * 297.54402 * 28 4 2 51 51 H 1.09003 * 109.50599 * 57.67193 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4725 -2.0546 1.2815 6 6 1.9592 -2.7183 2.5725 7 8 3.3892 -2.7057 2.5991 8 6 3.9558 -1.3949 2.5213 9 1 3.6303 -0.8056 3.3786 10 6 5.4595 -1.4958 2.5219 11 8 5.9942 -2.5841 2.4951 12 7 6.2099 -0.3768 2.5521 13 6 7.6717 -0.4749 2.5520 14 6 8.2771 0.9297 2.5900 15 7 9.7428 0.8313 2.5906 16 6 10.3599 2.1640 2.6261 17 6 11.8603 2.0230 2.6263 18 8 12.3658 0.9208 2.5990 19 7 12.6404 3.1216 2.6557 20 6 14.0053 2.9933 2.6554 21 1 14.4554 2.0119 2.6311 22 6 14.8096 4.1260 2.6863 23 7 14.2619 5.3201 2.7153 24 14 16.6694 3.9512 2.6850 25 1 17.1648 3.9412 1.2851 26 1 17.2744 5.0935 3.4161 27 1 17.0476 2.6800 3.3531 28 6 3.4892 -0.7188 1.2294 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 0.3834 -2.0098 1.2835 37 1 1.8113 -2.6354 0.4235 38 1 1.5750 -2.1685 3.4317 39 1 1.6029 -3.7477 2.6092 40 1 5.7822 0.4936 2.5739 41 1 7.9982 -1.0347 3.4285 42 1 8.0014 -0.9887 1.6491 43 1 7.9506 1.4900 1.7138 44 1 7.9474 1.4432 3.4931 45 1 10.0667 0.2620 3.3580 46 1 10.0481 2.7323 1.7498 47 1 10.0443 2.6865 3.5292 48 1 12.2361 4.0030 2.6772 49 1 14.8233 6.1109 2.7365 50 1 3.8609 -1.2784 0.3710 51 1 3.8723 0.3010 1.1934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132859180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:30 Heat of formation + Delta-G solvation = -135.356269 kcal Electronic energy + Delta-G solvation = -29389.468034 eV Core-core repulsion = 25129.784466 eV Total energy + Delta-G solvation = -4259.683569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54008 -40.20428 -39.98623 -37.81579 -37.37162 -36.00399 -35.30126 -33.28755 -33.09775 -32.80750 -30.56243 -28.53859 -27.99986 -27.29136 -25.64759 -24.99013 -23.21579 -22.66863 -21.41570 -21.09463 -21.05399 -19.91820 -18.68252 -17.90014 -17.77217 -17.33975 -17.26789 -16.75897 -16.59689 -16.46418 -16.16046 -15.90311 -15.82335 -15.49755 -15.29025 -15.19828 -14.84534 -14.61206 -14.53775 -14.16057 -13.96656 -13.52006 -13.33181 -13.32349 -13.20816 -12.93924 -12.81804 -12.76426 -12.62321 -12.59285 -12.41954 -12.39264 -12.11928 -12.09983 -11.76343 -11.53571 -11.50711 -10.93381 -10.76078 -10.36022 -10.22961 -10.01127 -9.49837 -9.37139 -8.46634 -5.95138 1.38428 1.41362 1.42516 1.54801 1.65882 2.05942 2.30029 2.60775 2.84304 3.12291 3.20957 3.52851 3.62808 3.69265 3.86607 3.88195 3.93045 4.00399 4.06904 4.12173 4.26284 4.32786 4.38607 4.43251 4.45756 4.47326 4.51930 4.61567 4.62679 4.70312 4.84738 4.86950 4.89281 4.93907 4.94334 4.96999 5.07546 5.25893 5.30390 5.39700 5.41490 5.84028 5.85291 5.95637 5.98778 6.07796 6.32866 6.45039 6.60729 7.12012 7.13232 7.56816 8.12682 8.70582 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.001516 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.922008 B =18462.724378 C =19482.573378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 C -0.147 4.147 4 N -0.528 5.528 5 C 0.012 3.988 6 C 0.059 3.941 7 O -0.392 6.392 8 C 0.085 3.915 9 H 0.117 0.883 10 C 0.517 3.483 11 O -0.571 6.571 12 N -0.704 5.704 13 C 0.128 3.872 14 C 0.059 3.941 15 N -0.687 5.687 16 C 0.069 3.931 17 C 0.434 3.566 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.033 3.967 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.420 0.580 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.346 0.654 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.398 0.602 49 H 0.278 0.722 50 H 0.029 0.971 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.183 -4.136 -2.326 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.204 4.204 4 N -0.254 5.254 5 C -0.116 4.116 6 C -0.017 4.017 7 O -0.311 6.311 8 C 0.024 3.976 9 H 0.134 0.866 10 C 0.302 3.698 11 O -0.449 6.449 12 N -0.359 5.359 13 C 0.004 3.996 14 C -0.070 4.070 15 N -0.320 5.320 16 C -0.063 4.063 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.096 4.096 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.164 0.836 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.232 0.768 49 H 0.087 0.913 50 H 0.047 0.953 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -33.396 -5.395 -2.623 33.930 hybrid contribution 0.885 0.510 0.090 1.025 sum -32.511 -4.885 -2.533 32.974 Atomic orbital electron populations 1.21891 0.92833 1.02415 1.03011 1.21753 0.96805 0.95483 0.89554 1.21902 1.01172 0.94271 1.03083 1.62361 1.05985 1.16723 1.40346 1.22941 1.02336 0.88611 0.97713 1.22979 0.78648 1.02838 0.97238 1.88094 1.21932 1.26200 1.94827 1.21947 0.88983 0.86226 1.00476 0.86564 1.20603 0.89443 0.84047 0.75676 1.90737 1.74837 1.29332 1.49993 1.45571 1.06462 1.09126 1.74724 1.21088 0.78832 0.97713 1.02009 1.22069 0.86491 0.95313 1.03097 1.59886 1.06080 1.13195 1.52880 1.21525 0.89580 0.91640 1.03595 1.20967 0.90357 0.84269 0.82208 1.90507 1.76672 1.27431 1.56655 1.41909 1.06093 1.07951 1.64970 1.19665 0.82594 0.94302 1.50017 0.90484 1.26005 1.04795 0.94056 0.96233 1.69658 1.38026 0.98038 1.50196 0.84944 0.76936 0.77951 0.78602 1.19719 1.19430 1.19932 1.22674 0.89597 1.02214 0.95130 0.91422 0.91152 0.92215 0.94971 0.91194 0.91237 0.92465 0.86817 0.95055 0.90692 0.86683 0.74201 0.92479 0.92328 0.88536 0.92178 0.83567 0.87184 0.90824 0.76819 0.91268 0.95294 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.84 71.98 0.64 -0.30 16 2 C 0.07 0.67 2.67 44.92 0.12 0.79 16 3 C -0.15 -1.09 8.97 71.98 0.65 -0.44 16 4 N -0.53 -5.89 4.60 -869.98 -4.00 -9.89 16 5 C 0.01 0.13 5.24 86.32 0.45 0.58 16 6 C 0.06 0.75 7.01 72.02 0.51 1.25 16 7 O -0.39 -8.46 10.01 -130.02 -1.30 -9.76 16 8 C 0.09 1.43 3.22 29.88 0.10 1.53 16 9 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 10 C 0.52 11.81 7.18 87.66 0.63 12.44 16 11 O -0.57 -19.66 16.51 15.94 0.26 -19.40 16 12 N -0.70 -11.55 5.52 -463.06 -2.56 -14.11 16 13 C 0.13 2.76 5.93 86.38 0.51 3.27 16 14 C 0.06 1.13 5.80 86.30 0.50 1.63 16 15 N -0.69 -20.39 6.13 -517.92 -3.17 -23.56 16 16 C 0.07 2.18 6.17 85.56 0.53 2.71 16 17 C 0.43 20.35 7.82 87.66 0.69 21.04 16 18 O -0.63 -34.90 15.78 -3.06 -0.05 -34.94 16 19 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 20 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 23 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 24 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.03 0.43 4.58 86.31 0.40 0.82 16 29 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.35 6.29 -2.39 -0.02 0.34 16 32 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.06 0.43 6.36 -2.39 -0.02 0.41 16 36 H 0.11 0.77 6.11 -2.39 -0.01 0.76 16 37 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.42 3.49 8.34 -92.71 -0.77 2.72 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.35 11.09 8.43 -89.70 -0.76 10.33 16 46 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 49 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 50 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.12 1.00 6.06 -2.39 -0.01 0.98 16 Total: -1.00 -79.08 411.58 -4.44 -83.52 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -1.30 Total: 35.50 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 6.99 Total: 26.94 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -11.07 Total: -126.75 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -1.09 Total: -64.10 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -79.08 -4.44 -83.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132859180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.839 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds