Wall clock time and date at job start Wed Apr 1 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47028 * 2 1 4 4 N 1.46896 * 109.47141 * 120.00357 * 2 1 3 5 5 C 1.47010 * 111.00312 * 298.63058 * 4 2 1 6 6 C 1.53092 * 109.26202 * 177.61043 * 5 4 2 7 7 O 1.43015 * 109.25900 * 56.85244 * 6 5 4 8 8 C 1.43018 * 113.73639 * 301.33235 * 7 6 5 9 9 H 1.09000 * 109.54022 * 298.71300 * 8 7 6 10 10 C 1.50703 * 109.50641 * 178.60516 * 8 7 6 11 11 O 1.21273 * 119.99963 * 355.21611 * 10 8 7 12 12 N 1.34779 * 119.99944 * 175.21450 * 10 8 7 13 13 C 1.46499 * 119.99872 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46840 * 179.97438 * 13 12 10 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.46906 * 110.99793 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47183 * 180.02562 * 16 15 14 18 18 O 1.21298 * 119.99556 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00297 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00235 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00174 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99846 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99973 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00170 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47524 * 89.99660 * 24 22 20 26 26 H 1.48505 * 109.46910 * 209.99760 * 24 22 20 27 27 H 1.48502 * 109.46948 * 329.99402 * 24 22 20 28 28 C 1.47020 * 110.99728 * 174.99934 * 4 2 1 29 29 H 1.08999 * 109.47398 * 59.99503 * 1 2 3 30 30 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47042 * 299.99323 * 1 2 3 32 32 H 1.08997 * 109.46738 * 240.00716 * 2 1 3 33 33 H 1.08995 * 109.46994 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47437 * 300.00474 * 3 2 1 35 35 H 1.09005 * 109.46656 * 60.00441 * 3 2 1 36 36 H 1.09005 * 109.50828 * 297.55167 * 5 4 2 37 37 H 1.09001 * 109.50603 * 57.63170 * 5 4 2 38 38 H 1.09004 * 109.51134 * 176.78622 * 6 5 4 39 39 H 1.09001 * 109.50960 * 296.91558 * 6 5 4 40 40 H 0.97005 * 119.99680 * 359.97438 * 12 10 8 41 41 H 1.09001 * 109.46813 * 60.00258 * 13 12 10 42 42 H 1.08992 * 109.47397 * 300.00319 * 13 12 10 43 43 H 1.09002 * 109.47398 * 300.00326 * 14 13 12 44 44 H 1.09001 * 109.47194 * 60.00507 * 14 13 12 45 45 H 1.00899 * 111.00283 * 303.95539 * 15 14 13 46 46 H 1.08995 * 109.47087 * 299.99901 * 16 15 14 47 47 H 1.09002 * 109.46903 * 59.99922 * 16 15 14 48 48 H 0.97000 * 119.99683 * 0.02562 * 19 17 16 49 49 H 0.96999 * 120.00403 * 179.97438 * 23 22 20 50 50 H 1.09006 * 109.50318 * 62.45686 * 28 4 2 51 51 H 1.08998 * 109.54005 * 302.35017 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5753 -0.0074 2.4218 6 6 2.0559 -0.7934 3.6444 7 8 3.4783 -0.9309 3.5875 8 6 3.9460 -1.5945 2.4101 9 1 3.5402 -2.6056 2.3760 10 6 5.4515 -1.6569 2.4320 11 8 6.0684 -1.1053 3.3185 12 7 6.1124 -2.3258 1.4664 13 6 7.5760 -2.3860 1.4874 14 6 8.0701 -3.1999 0.2897 15 7 9.5377 -3.2608 0.3111 16 6 10.0490 -4.0358 -0.8272 17 6 11.5545 -4.0767 -0.7714 18 8 12.1434 -3.5150 0.1280 19 7 12.2464 -4.7365 -1.7213 20 6 13.6159 -4.7733 -1.6708 21 1 14.1404 -4.2732 -0.8700 22 6 14.3292 -5.4540 -2.6499 23 7 15.6420 -5.4888 -2.6018 24 14 13.4221 -6.3184 -4.0353 25 1 13.2419 -5.3788 -5.1711 26 1 14.2104 -7.4937 -4.4855 27 1 12.0930 -6.7700 -3.5507 28 6 3.4844 -0.8166 1.1749 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.9943 0.9986 2.4480 37 1 0.4869 0.0514 2.4309 38 1 1.7780 -0.2592 4.5530 39 1 1.5946 -1.7810 3.6467 40 1 5.6188 -2.7674 0.7575 41 1 7.9068 -2.8615 2.4107 42 1 7.9820 -1.3760 1.4331 43 1 7.6640 -4.2100 0.3444 44 1 7.7392 -2.7249 -0.6338 45 1 9.9378 -2.3347 0.3266 46 1 9.6564 -5.0516 -0.7809 47 1 9.7322 -3.5659 -1.7583 48 1 11.7754 -5.1847 -2.4411 49 1 16.1400 -5.9643 -3.2850 50 1 3.9339 0.1764 1.1813 51 1 3.7902 -1.3488 0.2742 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132859226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:32 Heat of formation + Delta-G solvation = -130.462953 kcal Electronic energy + Delta-G solvation = -29456.957147 eV Core-core repulsion = 25197.485768 eV Total energy + Delta-G solvation = -4259.471379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56715 -40.33306 -40.07411 -37.88020 -37.39366 -36.03791 -35.32169 -33.74716 -33.12620 -32.46148 -30.60014 -28.42888 -28.12161 -27.31728 -25.59921 -25.17229 -23.35703 -22.90150 -21.46982 -21.28810 -20.53491 -20.28899 -18.62147 -17.93945 -17.70991 -17.34802 -17.03213 -16.88403 -16.62109 -16.60442 -16.06001 -15.85134 -15.77798 -15.46850 -15.27668 -15.10151 -14.96849 -14.71937 -14.61392 -14.19433 -13.96058 -13.91812 -13.81505 -13.38306 -13.12399 -12.98175 -12.95272 -12.78281 -12.59148 -12.42407 -12.37589 -12.36613 -12.07989 -11.96632 -11.80815 -11.59091 -11.50327 -10.92522 -10.75397 -10.44841 -10.24560 -10.21979 -9.42494 -9.36779 -8.40452 -6.02053 1.31544 1.37348 1.42802 1.46660 1.66815 1.96795 2.24621 2.65095 2.73096 3.03856 3.16077 3.46335 3.64202 3.70855 3.86971 3.88406 3.95119 3.97812 4.10898 4.15699 4.18265 4.23027 4.31221 4.41852 4.46544 4.48290 4.49712 4.60714 4.64529 4.67181 4.74560 4.86587 4.88906 4.90632 4.94960 4.99731 5.04923 5.26564 5.27411 5.37652 5.53094 5.86249 5.88571 5.96819 6.00041 6.01792 6.31333 6.46633 6.60329 6.88859 7.13775 7.40388 7.97803 8.77307 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.001572 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.271953 B =17812.302979 C =18728.707916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 C -0.188 4.188 4 N -0.526 5.526 5 C 0.010 3.990 6 C 0.058 3.942 7 O -0.392 6.392 8 C 0.084 3.916 9 H 0.116 0.884 10 C 0.517 3.483 11 O -0.572 6.572 12 N -0.703 5.703 13 C 0.126 3.874 14 C 0.061 3.939 15 N -0.692 5.692 16 C 0.066 3.934 17 C 0.445 3.555 18 O -0.618 6.618 19 N -0.589 5.589 20 C -0.332 4.332 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.228 1.228 28 C 0.032 3.968 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.421 0.579 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.346 0.654 46 H 0.120 0.880 47 H 0.085 0.915 48 H 0.391 0.609 49 H 0.279 0.721 50 H 0.035 0.965 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.705 7.099 -0.628 41.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.246 4.246 4 N -0.251 5.251 5 C -0.118 4.118 6 C -0.018 4.018 7 O -0.311 6.311 8 C 0.023 3.977 9 H 0.133 0.867 10 C 0.302 3.698 11 O -0.450 6.450 12 N -0.358 5.358 13 C 0.002 3.998 14 C -0.068 4.068 15 N -0.325 5.325 16 C -0.066 4.066 17 C 0.233 3.767 18 O -0.502 6.502 19 N -0.231 5.231 20 C -0.461 4.461 21 H 0.070 0.930 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.151 1.151 28 C -0.096 4.096 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.082 0.918 45 H 0.164 0.836 46 H 0.137 0.863 47 H 0.103 0.897 48 H 0.227 0.773 49 H 0.088 0.912 50 H 0.053 0.947 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -39.738 6.863 1.106 40.342 hybrid contribution 0.633 0.928 -1.514 1.886 sum -39.105 7.791 -0.409 39.876 Atomic orbital electron populations 1.21841 0.92905 1.02756 1.02391 1.21826 0.96776 0.92188 0.92530 1.22478 1.00910 0.98378 1.02870 1.62544 1.08814 1.51004 1.02739 1.22930 1.02661 0.96135 0.90052 1.22970 0.79003 1.01173 0.98656 1.88100 1.23672 1.79139 1.40158 1.21957 0.89742 0.99162 0.86856 0.86661 1.20623 0.89901 0.77969 0.81314 1.90740 1.70241 1.46496 1.37545 1.45556 1.07088 1.54567 1.28621 1.21096 0.79174 1.00106 0.99438 1.22071 0.86752 1.01617 0.96403 1.59885 1.06473 1.21722 1.44428 1.21626 0.89148 1.01882 0.93959 1.21094 0.91101 0.81851 0.82677 1.90563 1.72449 1.49554 1.37649 1.42002 1.05774 1.49518 1.25815 1.19012 0.81732 1.33645 1.11700 0.92954 1.26175 0.96328 0.97881 1.01138 1.69815 1.07802 1.43379 1.36617 0.85325 0.79680 0.78465 0.77769 1.18042 1.20195 1.15075 1.22651 0.89392 0.99685 0.97905 0.91154 0.91623 0.92429 0.88799 0.93569 0.90845 0.92708 0.94423 0.87172 0.86912 0.90833 0.74109 0.92493 0.92651 0.88301 0.91818 0.83583 0.86256 0.89683 0.77304 0.91155 0.94675 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.00 71.98 0.65 -0.07 16 2 C 0.07 0.54 2.96 44.92 0.13 0.67 16 3 C -0.19 -1.63 8.49 71.98 0.61 -1.02 16 4 N -0.53 -5.04 4.72 -869.98 -4.10 -9.14 16 5 C 0.01 0.10 4.86 86.31 0.42 0.52 16 6 C 0.06 0.70 7.01 72.01 0.50 1.21 16 7 O -0.39 -8.19 10.01 -130.02 -1.30 -9.49 16 8 C 0.08 1.32 3.22 29.88 0.10 1.42 16 9 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 10 C 0.52 11.25 7.18 87.66 0.63 11.88 16 11 O -0.57 -19.30 16.51 15.96 0.26 -19.03 16 12 N -0.70 -10.52 5.52 -463.07 -2.56 -13.07 16 13 C 0.13 2.54 5.93 86.38 0.51 3.05 16 14 C 0.06 1.00 5.80 86.30 0.50 1.50 16 15 N -0.69 -18.86 6.13 -517.91 -3.17 -22.03 16 16 C 0.07 1.82 6.17 85.56 0.53 2.35 16 17 C 0.44 19.64 7.82 87.66 0.69 20.33 16 18 O -0.62 -34.40 15.78 -3.08 -0.05 -34.45 16 19 N -0.59 -27.21 5.09 -306.99 -1.56 -28.77 16 20 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 23 N -0.94 -56.45 13.96 21.66 0.30 -56.15 16 24 Si 0.97 37.91 27.74 68.60 1.90 39.81 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 28 C 0.03 0.37 4.55 86.31 0.39 0.76 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.29 6.38 -2.38 -0.02 0.27 16 32 H 0.09 0.57 8.12 -2.39 -0.02 0.55 16 33 H 0.05 0.52 6.58 -2.39 -0.02 0.50 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.54 6.44 -2.38 -0.02 0.52 16 36 H 0.04 0.48 6.42 -2.38 -0.02 0.46 16 37 H 0.11 0.68 6.22 -2.39 -0.01 0.67 16 38 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.42 2.73 8.34 -92.70 -0.77 1.96 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.35 10.41 8.43 -89.69 -0.76 9.65 16 46 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.39 14.58 5.76 -92.71 -0.53 14.05 16 49 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.03 0.55 6.56 -2.38 -0.02 0.53 16 51 H 0.12 0.71 8.00 -2.39 -0.02 0.69 16 Total: -1.00 -88.55 405.46 -4.45 -93.00 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -1.16 Total: 35.73 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.98 Total: 23.59 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -11.09 Total: -129.16 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -1.09 Total: -62.96 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -88.55 -4.45 -93.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132859226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.464 kcal (2) G-P(sol) polarization free energy of solvation -88.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds