Wall clock time and date at job start Wed Apr 1 2020 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 C 1.50702 * 109.47188 * 119.99898 * 2 1 3 5 5 O 1.21283 * 120.00262 * 265.00211 * 4 2 1 6 6 N 1.34777 * 119.99928 * 84.72117 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.47411 * 180.02562 * 8 7 6 10 10 C 1.46897 * 111.00010 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.47255 * 179.97438 * 10 9 8 12 12 O 1.21292 * 119.99883 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00438 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00492 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99603 * 0.02562 * 14 13 11 16 16 C 1.38947 * 120.00433 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99624 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47368 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47601 * 119.99853 * 18 16 14 21 21 H 1.48499 * 109.47147 * 239.99819 * 18 16 14 22 22 N 1.46898 * 109.47370 * 239.99924 * 2 1 3 23 23 C 1.47015 * 111.00402 * 183.63878 * 22 2 1 24 24 C 1.53099 * 109.26057 * 177.60685 * 23 22 2 25 25 O 1.43019 * 109.25805 * 56.84528 * 24 23 22 26 26 C 1.43012 * 113.73715 * 301.33248 * 25 24 23 27 27 C 1.47010 * 111.00041 * 59.99606 * 22 2 1 28 28 H 1.08995 * 109.47098 * 300.00268 * 1 2 3 29 29 H 1.08994 * 109.47074 * 60.00188 * 1 2 3 30 30 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47301 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47146 * 300.00027 * 3 2 1 33 33 H 1.08995 * 109.47275 * 59.99840 * 3 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 35 35 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 36 36 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 37 37 H 1.08998 * 109.47382 * 300.00439 * 8 7 6 38 38 H 1.09005 * 109.46800 * 60.00640 * 8 7 6 39 39 H 1.00894 * 110.99896 * 56.04275 * 9 8 7 40 40 H 1.09005 * 109.47234 * 300.00081 * 10 9 8 41 41 H 1.09004 * 109.47341 * 59.99928 * 10 9 8 42 42 H 0.97000 * 120.00179 * 0.02562 * 13 11 10 43 43 H 0.97002 * 119.99947 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.50209 * 297.53931 * 23 22 2 45 45 H 1.08996 * 109.50752 * 57.66954 * 23 22 2 46 46 H 1.08999 * 109.50677 * 296.91624 * 24 23 22 47 47 H 1.08990 * 109.54292 * 176.80108 * 24 23 22 48 48 H 1.09005 * 109.50847 * 298.73304 * 26 25 24 49 49 H 1.08998 * 109.54441 * 178.62651 * 26 25 24 50 50 H 1.08999 * 109.50821 * 302.33260 * 27 22 2 51 51 H 1.09005 * 109.50447 * 62.41916 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3208 -0.0749 2.2224 6 7 2.1557 -2.0525 1.2306 7 6 2.6384 -2.7437 2.4287 8 6 2.6851 -4.2500 2.1647 9 7 3.1685 -4.9430 3.3664 10 6 3.2272 -6.3947 3.1490 11 6 3.7268 -7.0701 4.4000 12 8 4.0060 -6.4074 5.3768 13 7 3.8624 -8.4106 4.4340 14 6 4.3174 -9.0250 5.5720 15 1 4.5669 -8.4348 6.4414 16 6 4.4577 -10.4069 5.6068 17 7 4.1538 -11.1250 4.5490 18 14 5.0771 -11.2441 7.1575 19 1 5.3466 -10.2204 8.1989 20 1 4.0485 -12.1945 7.6516 21 1 6.3291 -11.9831 6.8548 22 7 2.0197 -0.6925 -1.1994 23 6 3.4867 -0.7880 -1.1906 24 6 3.9495 -1.5668 -2.4249 25 8 3.4559 -0.9218 -3.6020 26 6 2.0306 -0.8123 -3.6438 27 6 1.5483 -0.0260 -2.4220 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.9251 -2.5609 0.4373 35 1 3.6383 -2.3872 2.6758 36 1 1.9645 -2.5411 3.2612 37 1 1.6853 -4.6067 1.9174 38 1 3.3593 -4.4521 1.3323 39 1 2.5968 -4.7198 4.1671 40 1 2.2313 -6.7665 2.9079 41 1 3.9056 -6.6114 2.3239 42 1 3.6387 -8.9406 3.6530 43 1 4.2513 -12.0898 4.5734 44 1 3.9167 0.2134 -1.2098 45 1 3.8123 -1.3074 -0.2894 46 1 3.5632 -2.5850 -2.3787 47 1 5.0387 -1.5916 -2.4531 48 1 1.5885 -1.8087 -3.6331 49 1 1.7314 -0.2913 -4.5533 50 1 0.4589 0.0109 -2.4195 51 1 1.9467 0.9879 -2.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135347255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:56 Heat of formation + Delta-G solvation = -102.474906 kcal Electronic energy + Delta-G solvation = -30304.576576 eV Core-core repulsion = 26046.318850 eV Total energy + Delta-G solvation = -4258.257726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18176 -39.35395 -38.33988 -36.98496 -36.26349 -34.38765 -33.74569 -32.45220 -31.70004 -31.24593 -29.47433 -27.84737 -27.09160 -26.18708 -24.73505 -23.93840 -22.95567 -22.00806 -21.06407 -19.56685 -19.27594 -18.06179 -17.89816 -16.77401 -16.36791 -16.23445 -16.22884 -15.81075 -15.52422 -15.48993 -15.09002 -14.89646 -14.72587 -14.53139 -14.35225 -14.00286 -13.96993 -13.49069 -13.20868 -13.14355 -12.96494 -12.62010 -12.43493 -12.39895 -12.34907 -11.95013 -11.92707 -11.78775 -11.53229 -11.52997 -11.47004 -11.42386 -11.05886 -10.94729 -10.34857 -10.23871 -10.20863 -9.95994 -9.53418 -9.22292 -8.97704 -8.51581 -8.14121 -7.97785 -6.43169 -3.83918 2.32174 2.84162 3.11020 3.15781 3.26602 3.34139 3.43432 3.88606 4.05477 4.16639 4.35481 4.39366 4.42218 4.53215 4.58179 4.64245 4.74648 4.81575 4.87124 4.97892 5.00095 5.11095 5.14700 5.16899 5.20039 5.24050 5.24976 5.31635 5.35016 5.38349 5.41768 5.49210 5.65065 5.71331 5.76855 5.82226 5.88684 5.93240 6.17785 6.23769 6.31244 6.33155 6.68668 7.08770 7.30382 7.54464 7.55692 7.99503 8.05049 8.59507 9.16654 9.52494 10.03762 10.74618 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.001765 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.089516 B =15861.814118 C =16745.450508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.090 3.910 3 C -0.168 4.168 4 C 0.527 3.473 5 O -0.536 6.536 6 N -0.718 5.718 7 C 0.118 3.882 8 C 0.051 3.949 9 N -0.666 5.666 10 C 0.053 3.947 11 C 0.440 3.560 12 O -0.582 6.582 13 N -0.563 5.563 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.021 3.979 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.281 1.281 22 N -0.524 5.524 23 C 0.004 3.996 24 C 0.066 3.934 25 O -0.385 6.385 26 C 0.064 3.936 27 C 0.012 3.988 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.408 0.592 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.352 0.648 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 21.188 -19.882 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.227 4.227 4 C 0.312 3.688 5 O -0.412 6.412 6 N -0.370 5.370 7 C -0.006 4.006 8 C -0.079 4.079 9 N -0.299 5.299 10 C -0.080 4.080 11 C 0.225 3.775 12 O -0.466 6.466 13 N -0.200 5.200 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.207 1.207 22 N -0.251 5.251 23 C -0.124 4.124 24 C -0.011 4.011 25 O -0.303 6.303 26 C -0.013 4.013 27 C -0.116 4.116 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.079 0.921 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.675 21.545 -18.781 29.594 hybrid contribution -0.738 -0.680 0.098 1.008 sum -8.413 20.865 -18.683 29.244 Atomic orbital electron populations 1.21854 0.91135 1.03468 1.03069 1.21320 0.97340 0.93168 0.88424 1.22264 1.02053 0.95112 1.03251 1.20188 0.77439 0.82368 0.88837 1.90745 1.49396 1.66230 1.34817 1.45966 1.67041 1.06955 1.17052 1.21310 1.00885 0.91295 0.87139 1.22063 0.98628 0.92512 0.94742 1.59928 1.58007 1.07087 1.04853 1.21666 1.00116 0.87665 0.98557 1.19778 0.85261 0.83063 0.89371 1.90535 1.55196 1.64050 1.36832 1.41865 1.57886 1.04880 1.15388 1.19762 1.39989 0.90067 0.92994 0.87830 1.25272 0.97652 0.96410 0.98686 1.69620 1.48738 1.06983 1.28976 0.85789 0.78222 0.79089 0.81190 1.19192 1.20774 1.20734 1.62481 1.10186 1.51045 1.01364 1.23006 0.87658 1.01115 1.00638 1.22663 0.99589 0.95620 0.83222 1.88008 1.21058 1.80082 1.41185 1.22670 0.81373 1.00130 0.97160 1.22918 1.01624 0.97132 0.89896 0.91139 0.91128 0.91097 0.91947 0.91568 0.90476 0.75662 0.90271 0.91382 0.94920 0.90484 0.82830 0.93714 0.89464 0.77455 0.91917 0.93072 0.88990 0.91937 0.88183 0.92071 0.88402 0.88970 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.23 37.16 0.31 -0.53 16 2 C 0.09 0.69 0.63 -132.76 -0.08 0.61 16 3 C -0.17 -1.31 7.31 37.16 0.27 -1.04 16 4 C 0.53 5.64 5.40 -10.98 -0.06 5.58 16 5 O -0.54 -7.93 16.10 5.55 0.09 -7.84 16 6 N -0.72 -6.67 4.46 -60.29 -0.27 -6.94 16 7 C 0.12 1.32 5.93 -4.04 -0.02 1.29 16 8 C 0.05 0.57 5.80 -3.82 -0.02 0.54 16 9 N -0.67 -10.39 6.12 -115.06 -0.70 -11.10 16 10 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 11 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 12 O -0.58 -15.84 15.78 5.55 0.09 -15.76 16 13 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 14 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 15 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 18 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 N -0.52 -3.39 3.83 -220.00 -0.84 -4.24 16 23 C 0.00 0.03 4.87 -3.71 -0.02 0.01 16 24 C 0.07 0.45 7.01 37.21 0.26 0.71 16 25 O -0.38 -3.12 10.83 -35.23 -0.38 -3.50 16 26 C 0.06 0.35 7.01 37.21 0.26 0.61 16 27 C 0.01 0.06 4.87 -3.71 -0.02 0.05 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.31 6.35 -51.93 -0.33 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 32 H 0.07 0.40 6.46 -51.93 -0.34 0.07 16 33 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 34 H 0.41 3.06 7.80 -40.82 -0.32 2.74 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.35 5.73 8.43 -39.30 -0.33 5.40 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.05 0.41 6.52 -51.93 -0.34 0.07 16 45 H 0.09 0.75 6.23 -51.93 -0.32 0.43 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.36 6.19 -51.93 -0.32 0.04 16 51 H 0.05 0.29 6.44 -51.93 -0.33 -0.04 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -33.57 402.44 -8.08 -41.65 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -8.29 Total: 12.64 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 0.52 Total: 10.94 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -1.15 Total: -60.22 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.20 Total: -27.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.57 -8.08 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135347255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.823 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds