Wall clock time and date at job start Wed Apr 1 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 C 1.50702 * 109.47188 * 119.99898 * 2 1 3 5 5 O 1.21283 * 120.00262 * 265.00211 * 4 2 1 6 6 N 1.34777 * 119.99928 * 84.72117 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 C 1.52997 * 109.47555 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.47411 * 180.02562 * 8 7 6 10 10 C 1.46897 * 111.00010 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.47255 * 179.97438 * 10 9 8 12 12 O 1.21292 * 119.99883 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00438 * 179.97438 * 11 10 9 14 14 C 1.37100 * 120.00492 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99603 * 0.02562 * 14 13 11 16 16 C 1.38947 * 120.00433 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99624 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47368 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47601 * 119.99853 * 18 16 14 21 21 H 1.48499 * 109.47147 * 239.99819 * 18 16 14 22 22 N 1.46898 * 109.47370 * 239.99924 * 2 1 3 23 23 C 1.47015 * 111.00402 * 183.63878 * 22 2 1 24 24 C 1.53099 * 109.26057 * 177.60685 * 23 22 2 25 25 O 1.43019 * 109.25805 * 56.84528 * 24 23 22 26 26 C 1.43012 * 113.73715 * 301.33248 * 25 24 23 27 27 C 1.47010 * 111.00041 * 59.99606 * 22 2 1 28 28 H 1.08995 * 109.47098 * 300.00268 * 1 2 3 29 29 H 1.08994 * 109.47074 * 60.00188 * 1 2 3 30 30 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47301 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47146 * 300.00027 * 3 2 1 33 33 H 1.08995 * 109.47275 * 59.99840 * 3 2 1 34 34 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 35 35 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 36 36 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 37 37 H 1.08998 * 109.47382 * 300.00439 * 8 7 6 38 38 H 1.09005 * 109.46800 * 60.00640 * 8 7 6 39 39 H 1.00894 * 110.99896 * 56.04275 * 9 8 7 40 40 H 1.09005 * 109.47234 * 300.00081 * 10 9 8 41 41 H 1.09004 * 109.47341 * 59.99928 * 10 9 8 42 42 H 0.97000 * 120.00179 * 0.02562 * 13 11 10 43 43 H 0.97002 * 119.99947 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.50209 * 297.53931 * 23 22 2 45 45 H 1.08996 * 109.50752 * 57.66954 * 23 22 2 46 46 H 1.08999 * 109.50677 * 296.91624 * 24 23 22 47 47 H 1.08990 * 109.54292 * 176.80108 * 24 23 22 48 48 H 1.09005 * 109.50847 * 298.73304 * 26 25 24 49 49 H 1.08998 * 109.54441 * 178.62651 * 26 25 24 50 50 H 1.08999 * 109.50821 * 302.33260 * 27 22 2 51 51 H 1.09005 * 109.50447 * 62.41916 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3208 -0.0749 2.2224 6 7 2.1557 -2.0525 1.2306 7 6 2.6384 -2.7437 2.4287 8 6 2.6851 -4.2500 2.1647 9 7 3.1685 -4.9430 3.3664 10 6 3.2272 -6.3947 3.1490 11 6 3.7268 -7.0701 4.4000 12 8 4.0060 -6.4074 5.3768 13 7 3.8624 -8.4106 4.4340 14 6 4.3174 -9.0250 5.5720 15 1 4.5669 -8.4348 6.4414 16 6 4.4577 -10.4069 5.6068 17 7 4.1538 -11.1250 4.5490 18 14 5.0771 -11.2441 7.1575 19 1 5.3466 -10.2204 8.1989 20 1 4.0485 -12.1945 7.6516 21 1 6.3291 -11.9831 6.8548 22 7 2.0197 -0.6925 -1.1994 23 6 3.4867 -0.7880 -1.1906 24 6 3.9495 -1.5668 -2.4249 25 8 3.4559 -0.9218 -3.6020 26 6 2.0306 -0.8123 -3.6438 27 6 1.5483 -0.0260 -2.4220 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.9251 -2.5609 0.4373 35 1 3.6383 -2.3872 2.6758 36 1 1.9645 -2.5411 3.2612 37 1 1.6853 -4.6067 1.9174 38 1 3.3593 -4.4521 1.3323 39 1 2.5968 -4.7198 4.1671 40 1 2.2313 -6.7665 2.9079 41 1 3.9056 -6.6114 2.3239 42 1 3.6387 -8.9406 3.6530 43 1 4.2513 -12.0898 4.5734 44 1 3.9167 0.2134 -1.2098 45 1 3.8123 -1.3074 -0.2894 46 1 3.5632 -2.5850 -2.3787 47 1 5.0387 -1.5916 -2.4531 48 1 1.5885 -1.8087 -3.6331 49 1 1.7314 -0.2913 -4.5533 50 1 0.4589 0.0109 -2.4195 51 1 1.9467 0.9879 -2.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135347255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:55 Heat of formation + Delta-G solvation = -131.186665 kcal Electronic energy + Delta-G solvation = -30305.821612 eV Core-core repulsion = 26046.318850 eV Total energy + Delta-G solvation = -4259.502761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87271 -40.19908 -40.00155 -37.75157 -37.30297 -36.00939 -35.21662 -33.27074 -33.03035 -32.18649 -30.61137 -28.43116 -27.88539 -27.45185 -25.90898 -24.96672 -23.78411 -22.92747 -21.68899 -21.09964 -20.25432 -19.91814 -18.73572 -17.78284 -17.39176 -17.28096 -17.02561 -16.89056 -16.52008 -16.26122 -16.00475 -15.92319 -15.78509 -15.60326 -15.30652 -15.22630 -15.00562 -14.89266 -14.39860 -14.10825 -13.68508 -13.56149 -13.52257 -13.32194 -13.18685 -13.04318 -12.93900 -12.84173 -12.60170 -12.50610 -12.41357 -12.37927 -12.33069 -12.11832 -12.04561 -11.51888 -11.43246 -10.91114 -10.64320 -10.36892 -10.12918 -10.01722 -9.52600 -9.38829 -8.47269 -5.95726 1.36452 1.42105 1.48503 1.56079 1.98434 2.04942 2.30283 2.54308 2.97967 3.00200 3.20155 3.45516 3.60955 3.81130 3.84804 3.91743 3.98254 4.01020 4.10977 4.13453 4.28221 4.31817 4.34798 4.45842 4.50359 4.51973 4.60488 4.61613 4.62513 4.68577 4.74486 4.82722 4.85439 4.88173 4.90921 4.94642 5.02661 5.13536 5.21791 5.35580 5.41285 5.69618 5.81888 5.84319 6.06918 6.21800 6.31542 6.51306 6.59900 7.12631 7.18136 7.56004 8.11638 8.70247 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.001765 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.089516 B =15861.814118 C =16745.450508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.096 3.904 3 C -0.165 4.165 4 C 0.524 3.476 5 O -0.583 6.583 6 N -0.702 5.702 7 C 0.126 3.874 8 C 0.061 3.939 9 N -0.685 5.685 10 C 0.068 3.932 11 C 0.435 3.565 12 O -0.626 6.626 13 N -0.572 5.572 14 C -0.333 4.333 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.919 5.919 18 Si 0.992 3.008 19 H -0.275 1.275 20 H -0.270 1.270 21 H -0.271 1.271 22 N -0.517 5.517 23 C 0.007 3.993 24 C 0.068 3.932 25 O -0.406 6.406 26 C 0.060 3.940 27 C 0.012 3.988 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.420 0.580 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.345 0.655 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.398 0.602 43 H 0.278 0.722 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.114 0.886 50 H 0.113 0.887 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 20.733 -22.055 31.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.004 3.996 3 C -0.224 4.224 4 C 0.310 3.690 5 O -0.462 6.462 6 N -0.355 5.355 7 C 0.002 3.998 8 C -0.069 4.069 9 N -0.318 5.318 10 C -0.064 4.064 11 C 0.223 3.777 12 O -0.512 6.512 13 N -0.210 5.210 14 C -0.463 4.463 15 H 0.095 0.905 16 C -0.213 4.213 17 N -0.560 5.560 18 Si 0.816 3.184 19 H -0.200 1.200 20 H -0.195 1.195 21 H -0.196 1.196 22 N -0.244 5.244 23 C -0.121 4.121 24 C -0.009 4.009 25 O -0.324 6.324 26 C -0.016 4.016 27 C -0.115 4.115 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.258 0.742 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.085 0.915 49 H 0.132 0.868 50 H 0.131 0.869 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.952 21.065 -21.027 31.081 hybrid contribution -0.351 -0.478 0.730 0.941 sum -9.303 20.588 -20.297 30.370 Atomic orbital electron populations 1.21870 0.89436 1.04081 1.03853 1.21263 0.98426 0.92472 0.87461 1.22243 1.01105 0.95444 1.03585 1.20794 0.76474 0.82490 0.89266 1.90724 1.51496 1.67175 1.36823 1.45811 1.66198 1.06693 1.16817 1.21071 0.99454 0.91713 0.87605 1.22044 1.00110 0.91489 0.93208 1.59895 1.59035 1.06489 1.06406 1.21522 1.01659 0.87988 0.95208 1.20936 0.83466 0.82425 0.90885 1.90505 1.56664 1.64853 1.39204 1.41924 1.58378 1.05732 1.14928 1.19688 1.42265 0.90813 0.93544 0.90471 1.26026 0.97227 0.96388 1.01641 1.69670 1.48600 1.07515 1.30189 0.84878 0.78206 0.77856 0.77442 1.19957 1.19524 1.19596 1.62518 1.09535 1.50888 1.01449 1.22935 0.88249 1.00468 1.00473 1.22677 0.99922 0.95667 0.82620 1.87984 1.22647 1.80282 1.41530 1.22852 0.80138 1.00738 0.97910 1.23015 1.02813 0.96729 0.88933 0.91990 0.88760 0.90559 0.93444 0.89428 0.91856 0.74218 0.92450 0.92605 0.92618 0.88893 0.83601 0.90928 0.87275 0.76831 0.91269 0.94193 0.90126 0.91266 0.87871 0.91521 0.86763 0.86864 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.23 71.98 0.59 -0.75 16 2 C 0.10 1.36 0.63 2.78 0.00 1.36 16 3 C -0.16 -2.48 7.31 71.98 0.53 -1.96 16 4 C 0.52 11.11 5.40 87.66 0.47 11.58 16 5 O -0.58 -17.87 16.10 -3.04 -0.05 -17.91 16 6 N -0.70 -12.38 4.46 -463.06 -2.07 -14.45 16 7 C 0.13 2.78 5.93 86.38 0.51 3.29 16 8 C 0.06 1.23 5.80 86.30 0.50 1.73 16 9 N -0.69 -20.65 6.12 -517.94 -3.17 -23.82 16 10 C 0.07 2.21 6.17 85.56 0.53 2.74 16 11 C 0.44 20.49 7.82 87.65 0.69 21.18 16 12 O -0.63 -34.93 15.78 -3.07 -0.05 -34.98 16 13 N -0.57 -29.06 5.29 -306.99 -1.62 -30.69 16 14 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 15 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 16 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 17 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 18 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 N -0.52 -5.73 3.83 -849.94 -3.25 -8.98 16 23 C 0.01 0.10 4.87 86.31 0.42 0.52 16 24 C 0.07 0.84 7.01 72.02 0.50 1.34 16 25 O -0.41 -5.88 10.83 -148.98 -1.61 -7.49 16 26 C 0.06 0.51 7.01 72.02 0.50 1.02 16 27 C 0.01 0.10 4.87 86.32 0.42 0.52 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.50 6.35 -2.39 -0.02 0.49 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.85 6.54 -2.38 -0.02 0.83 16 32 H 0.09 0.91 6.46 -2.39 -0.02 0.90 16 33 H 0.06 1.13 7.87 -2.39 -0.02 1.11 16 34 H 0.42 5.39 7.80 -92.71 -0.72 4.67 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.35 11.19 8.43 -89.70 -0.76 10.43 16 40 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 42 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 43 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.04 0.64 6.52 -2.39 -0.02 0.62 16 45 H 0.08 1.28 6.23 -2.39 -0.01 1.27 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 48 H 0.07 0.50 8.14 -2.38 -0.02 0.49 16 49 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.11 0.43 6.19 -2.39 -0.01 0.42 16 51 H 0.05 0.43 6.44 -2.38 -0.02 0.42 16 Total: -1.00 -74.60 402.44 -3.81 -78.41 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -1.24 Total: 39.57 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.95 Total: 24.21 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -9.83 Total: -126.77 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -1.71 Total: -60.38 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.60 -3.81 -78.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135347255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.781 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds