Wall clock time and date at job start Wed Apr 1 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00102 * 2 1 4 4 O 1.21585 * 119.99767 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99776 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47283 * 60.00100 * 6 5 3 8 8 C 1.53001 * 109.46985 * 299.99922 * 6 5 3 9 9 C 1.50702 * 109.47099 * 180.02562 * 6 5 3 10 10 O 1.21282 * 119.99768 * 144.71964 * 9 6 5 11 11 N 1.34776 * 119.99975 * 325.00253 * 9 6 5 12 12 C 1.46500 * 119.99780 * 180.02562 * 11 9 6 13 13 C 1.52999 * 109.46754 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.47220 * 304.99864 * 13 12 11 15 15 C 1.54805 * 109.46915 * 185.00939 * 13 12 11 16 16 N 1.45125 * 109.53987 * 172.10778 * 15 13 12 17 17 C 1.36937 * 118.75915 * 269.28799 * 16 15 13 18 18 H 1.08000 * 119.99911 * 26.09586 * 17 16 15 19 19 C 1.38811 * 120.00167 * 206.09812 * 17 16 15 20 20 N 1.31623 * 119.99855 * 15.46076 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 195.47056 * 19 17 16 22 22 H 1.48497 * 109.47451 * 59.99465 * 21 19 17 23 23 H 1.48504 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47084 * 299.99602 * 21 19 17 25 25 C 1.47514 * 122.48419 * 89.28860 * 16 15 13 26 26 C 1.53578 * 111.02385 * 318.37501 * 25 16 15 27 27 C 1.51537 * 109.57892 * 320.01925 * 26 25 16 28 28 O 1.38017 * 109.47378 * 64.99726 * 13 12 11 29 29 H 1.09003 * 109.47018 * 60.00291 * 1 2 3 30 30 H 1.09004 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47451 * 300.00597 * 1 2 3 32 32 H 0.97004 * 120.00236 * 179.97438 * 2 1 3 33 33 H 0.96998 * 120.00000 * 0.02562 * 5 3 2 34 34 H 1.09005 * 109.47048 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.46834 * 299.99923 * 7 6 5 36 36 H 1.08996 * 109.47259 * 59.99792 * 7 6 5 37 37 H 1.09003 * 109.47257 * 300.00366 * 8 6 5 38 38 H 1.08999 * 109.47252 * 60.00003 * 8 6 5 39 39 H 1.08997 * 109.47092 * 180.02562 * 8 6 5 40 40 H 0.97000 * 119.99675 * 359.97438 * 11 9 6 41 41 H 1.09000 * 109.47054 * 299.99401 * 12 11 9 42 42 H 1.09000 * 109.47377 * 59.99919 * 12 11 9 43 43 H 1.09000 * 109.46118 * 292.12637 * 15 13 12 44 44 H 1.09004 * 109.46031 * 52.08609 * 15 13 12 45 45 H 0.97003 * 119.99624 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.16745 * 197.97544 * 25 16 15 47 47 H 1.09001 * 109.12572 * 78.74218 * 25 16 15 48 48 H 1.08999 * 109.45012 * 199.98926 * 26 25 16 49 49 H 1.08994 * 109.45124 * 80.05569 * 26 25 16 50 50 H 1.08993 * 109.59375 * 331.61827 * 27 26 25 51 51 H 1.09006 * 109.58377 * 211.18391 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.2192 2.4359 0.0011 7 6 3.8491 3.2379 1.2503 8 6 3.8500 3.2384 -1.2481 9 6 5.7008 2.1605 0.0010 10 8 6.4536 2.8930 -0.6054 11 7 6.1886 1.0970 0.6699 12 6 7.6290 0.8297 0.6702 13 6 7.9145 -0.4254 1.4974 14 1 7.4944 -0.3057 2.4962 15 6 9.4444 -0.6366 1.6033 16 7 9.7224 -1.7123 2.5370 17 6 9.9106 -1.4056 3.8583 18 1 9.4613 -0.5166 4.2755 19 6 10.6788 -2.2374 4.6613 20 7 11.4681 -3.1365 4.1125 21 14 10.5921 -2.0810 6.5206 22 1 9.2002 -2.3300 6.9741 23 1 11.5009 -3.0764 7.1440 24 1 11.0062 -0.7125 6.9221 25 6 9.8101 -3.1235 2.1165 26 6 8.7066 -3.4665 1.1049 27 6 7.4133 -2.7923 1.5160 28 8 7.3399 -1.5207 0.8850 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3271 0.0005 34 1 4.3938 4.1821 1.2505 35 1 2.7775 3.4371 1.2499 36 1 4.1120 2.6662 2.1403 37 1 4.1136 2.6670 -2.1382 38 1 2.7784 3.4376 -1.2485 39 1 4.3953 4.1822 -1.2480 40 1 5.5860 0.5091 1.1518 41 1 7.9702 0.6759 -0.3535 42 1 8.1561 1.6788 1.1053 43 1 9.8441 -0.8947 0.6226 44 1 9.9142 0.2814 1.9565 45 1 12.0052 -3.7175 4.6737 46 1 9.7053 -3.7648 2.9916 47 1 10.7832 -3.2998 1.6581 48 1 8.5608 -4.5464 1.0791 49 1 8.9999 -3.1164 0.1152 50 1 7.3956 -2.6648 2.5983 51 1 6.5670 -3.4044 1.2041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150777505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:49 Heat of formation + Delta-G solvation = -103.439713 kcal Electronic energy + Delta-G solvation = -31717.046565 eV Core-core repulsion = 27458.747001 eV Total energy + Delta-G solvation = -4258.299563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90322 -40.71383 -40.16133 -37.04885 -36.87502 -36.06280 -35.45458 -33.62140 -33.39535 -32.39711 -30.22339 -28.30630 -27.55768 -27.22736 -27.04431 -25.09550 -23.62287 -22.35924 -22.00532 -21.36371 -20.68689 -19.89094 -18.86355 -18.67850 -17.62370 -17.37898 -16.89413 -16.65272 -16.53755 -16.43690 -16.13545 -15.88481 -15.52950 -15.29586 -15.16036 -14.81933 -14.69893 -14.48648 -14.24378 -13.94025 -13.71279 -13.53249 -13.33610 -13.16994 -13.12269 -13.01657 -12.92545 -12.87519 -12.74047 -12.50609 -12.40789 -12.35918 -12.10126 -11.75704 -11.48508 -11.39813 -11.30630 -10.78396 -10.52938 -10.41173 -10.26975 -10.19762 -9.86390 -8.72473 -7.89743 -5.36894 1.26797 1.46601 1.47490 1.54268 1.79877 1.94258 2.15928 2.49201 2.75965 3.25395 3.27730 3.46468 3.57554 3.88315 3.94048 4.07243 4.14400 4.23614 4.37144 4.49243 4.53819 4.58841 4.62880 4.68609 4.69987 4.73404 4.75262 4.76089 4.82856 4.85422 4.92390 5.03039 5.13415 5.16398 5.20469 5.22690 5.26126 5.30647 5.37059 5.47814 5.56507 5.61530 5.76246 5.91789 6.34955 6.38550 6.74387 7.01975 7.06401 7.14315 7.58046 7.86798 8.27398 9.15734 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.002649 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.894233 B =10565.507742 C =10890.466499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.739 5.739 3 C 0.704 3.296 4 O -0.617 6.617 5 N -0.732 5.732 6 C 0.188 3.812 7 C -0.156 4.156 8 C -0.144 4.144 9 C 0.520 3.480 10 O -0.563 6.563 11 N -0.704 5.704 12 C 0.140 3.860 13 C 0.087 3.913 14 H 0.046 0.954 15 C 0.122 3.878 16 N -0.605 5.605 17 C -0.270 4.270 18 H 0.068 0.932 19 C -0.045 4.045 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.278 1.278 25 C 0.184 3.816 26 C -0.165 4.165 27 C 0.092 3.908 28 O -0.389 6.389 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.413 0.587 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.250 0.750 46 H 0.046 0.954 47 H -0.009 1.009 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.039 0.961 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.420 2.686 -8.279 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.395 5.395 3 C 0.404 3.596 4 O -0.497 6.497 5 N -0.392 5.392 6 C 0.098 3.902 7 C -0.214 4.214 8 C -0.203 4.203 9 C 0.305 3.695 10 O -0.440 6.440 11 N -0.356 5.356 12 C 0.016 3.984 13 C 0.025 3.975 14 H 0.064 0.936 15 C -0.006 4.006 16 N -0.327 5.327 17 C -0.400 4.400 18 H 0.086 0.914 19 C -0.240 4.240 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.204 1.204 25 C 0.059 3.941 26 C -0.203 4.203 27 C 0.016 3.984 28 O -0.308 6.308 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.245 0.755 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.009 0.991 48 H 0.102 0.898 49 H 0.079 0.921 50 H 0.058 0.942 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.378 4.028 -8.806 22.562 hybrid contribution 1.176 -1.189 1.568 2.293 sum -19.201 2.839 -7.238 20.716 Atomic orbital electron populations 1.21526 0.77177 1.03940 1.01330 1.44919 1.08369 1.06904 1.79318 1.16042 0.81443 0.84760 0.77387 1.90855 1.68446 1.31418 1.58988 1.45119 1.04831 1.08646 1.80570 1.20229 0.85746 0.85264 0.98996 1.22165 1.04292 1.00059 0.94886 1.22000 1.03247 1.00084 0.94927 1.20659 0.90253 0.80506 0.78098 1.90726 1.60025 1.48709 1.44546 1.45907 1.08996 1.28207 1.52491 1.21272 0.80953 0.95302 1.00898 1.22262 0.95175 0.85302 0.94727 0.93610 1.21572 0.94159 0.91716 0.93137 1.44028 1.82388 1.01763 1.04550 1.19474 1.24888 1.09298 0.86323 0.91410 1.25750 0.96291 0.99762 1.02241 1.70224 1.27746 1.24984 1.35080 0.85411 0.77451 0.77162 0.80829 1.20104 1.22284 1.20397 1.20787 0.93534 0.84319 0.95429 1.22624 0.97032 1.01312 0.99375 1.22087 0.96950 0.82662 0.96720 1.86086 1.77350 1.16145 1.51182 0.93324 0.87333 0.93291 0.75092 0.75488 0.90926 0.89749 0.91369 0.92707 0.90132 0.91061 0.75156 0.90941 0.90076 0.93845 0.93193 0.94134 0.93587 0.99083 0.89764 0.92079 0.94234 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.70 127.77 1.37 2.40 16 2 N -0.74 -8.84 5.72 -500.19 -2.86 -11.69 16 3 C 0.70 13.32 7.98 179.05 1.43 14.75 16 4 O -0.62 -16.05 12.55 -3.98 -0.05 -16.10 16 5 N -0.73 -12.13 4.86 -441.44 -2.15 -14.28 16 6 C 0.19 3.92 0.98 2.86 0.00 3.93 16 7 C -0.16 -3.17 8.38 71.98 0.60 -2.56 16 8 C -0.14 -3.26 7.93 71.98 0.57 -2.69 16 9 C 0.52 12.73 6.65 87.66 0.58 13.31 16 10 O -0.56 -17.92 16.09 -3.03 -0.05 -17.96 16 11 N -0.70 -15.39 5.19 -463.06 -2.40 -17.79 16 12 C 0.14 3.68 5.34 86.38 0.46 4.14 16 13 C 0.09 2.65 2.68 31.21 0.08 2.73 16 14 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 15 C 0.12 4.71 5.12 87.25 0.45 5.15 16 16 N -0.61 -28.25 2.23 -698.12 -1.55 -29.80 16 17 C -0.27 -13.93 9.46 84.03 0.80 -13.13 16 18 H 0.07 3.40 7.88 -2.91 -0.02 3.38 16 19 C -0.04 -2.39 4.89 84.86 0.41 -1.97 16 20 N -0.93 -53.38 11.00 21.65 0.24 -53.14 16 21 Si 0.96 43.07 29.58 68.60 2.03 45.10 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.18 8.40 4.70 86.38 0.41 8.80 16 26 C -0.16 -5.49 5.79 30.31 0.18 -5.31 16 27 C 0.09 2.66 6.37 71.50 0.46 3.12 16 28 O -0.39 -11.15 9.38 -117.89 -1.11 -12.25 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.41 2.55 8.84 -92.71 -0.82 1.73 16 33 H 0.41 5.10 7.25 -92.71 -0.67 4.43 16 34 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.92 6.16 -2.39 -0.01 1.91 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.95 6.16 -2.39 -0.01 1.93 16 39 H 0.07 1.65 7.87 -2.39 -0.02 1.63 16 40 H 0.41 7.32 7.20 -92.71 -0.67 6.66 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 44 H 0.05 1.96 7.98 -2.38 -0.02 1.94 16 45 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 46 H 0.05 2.35 6.37 -2.39 -0.02 2.33 16 47 H -0.01 -0.46 8.04 -2.39 -0.02 -0.48 16 48 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 50 H 0.04 1.35 7.40 -2.39 -0.02 1.34 16 51 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -69.88 400.05 -1.31 -71.19 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -1.20 Total: 24.07 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 7.80 Total: 32.66 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -8.72 Total: -126.70 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.20 Total: -46.31 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.88 -1.31 -71.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150777505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.254 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds