Wall clock time and date at job start Wed Apr 1 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 119.99886 * 2 1 4 4 O 1.21584 * 120.00190 * 0.27374 * 3 2 1 5 5 N 1.34782 * 120.00086 * 180.27528 * 3 2 1 6 6 C 1.46497 * 120.00293 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47009 * 300.00047 * 6 5 3 8 8 C 1.52994 * 109.47262 * 59.99473 * 6 5 3 9 9 C 1.50695 * 109.47604 * 180.02562 * 6 5 3 10 10 O 1.21271 * 120.00578 * 144.99706 * 9 6 5 11 11 N 1.34785 * 119.99666 * 324.99547 * 9 6 5 12 12 C 1.46497 * 119.99913 * 180.02562 * 11 9 6 13 13 C 1.52999 * 109.46935 * 180.02562 * 12 11 9 14 14 H 1.09003 * 108.57442 * 59.99996 * 13 12 11 15 15 C 1.46917 * 108.62047 * 177.94430 * 13 12 11 16 16 N 1.50107 * 106.78472 * 178.04090 * 15 13 12 17 17 C 1.36939 * 120.75113 * 111.17909 * 16 15 13 18 18 H 1.07999 * 120.00224 * 155.72022 * 17 16 15 19 19 C 1.38818 * 119.99573 * 335.71923 * 17 16 15 20 20 N 1.31615 * 120.00287 * 340.85777 * 19 17 16 21 21 Si 1.86797 * 119.99707 * 160.86273 * 19 17 16 22 22 H 1.48502 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47300 * 119.99684 * 21 19 17 24 24 H 1.48506 * 109.46980 * 239.99709 * 21 19 17 25 25 C 1.43423 * 118.61235 * 291.15394 * 16 15 13 26 26 C 1.55325 * 116.23764 * 89.40858 * 25 16 15 27 27 C 1.55190 * 108.87087 * 319.46041 * 26 25 16 28 28 O 1.39646 * 110.57149 * 322.14416 * 27 26 25 29 29 H 1.09009 * 109.47245 * 179.72471 * 1 2 3 30 30 H 1.09000 * 109.47054 * 299.72046 * 1 2 3 31 31 H 1.08993 * 109.47335 * 59.72938 * 1 2 3 32 32 H 0.97005 * 120.00039 * 180.27081 * 2 1 3 33 33 H 0.97005 * 119.99895 * 359.97438 * 5 3 2 34 34 H 1.09003 * 109.47324 * 59.99441 * 7 6 5 35 35 H 1.08998 * 109.47120 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46788 * 300.00161 * 7 6 5 37 37 H 1.08999 * 109.47276 * 60.00327 * 8 6 5 38 38 H 1.09000 * 109.47261 * 180.02562 * 8 6 5 39 39 H 1.08998 * 109.47654 * 300.00504 * 8 6 5 40 40 H 0.97002 * 119.99546 * 0.02562 * 11 9 6 41 41 H 1.09007 * 109.47160 * 299.99683 * 12 11 9 42 42 H 1.08997 * 109.47422 * 59.99951 * 12 11 9 43 43 H 1.08997 * 109.99116 * 297.23626 * 15 13 12 44 44 H 1.09006 * 109.99276 * 58.60152 * 15 13 12 45 45 H 0.96991 * 120.00485 * 179.97438 * 20 19 17 46 46 H 1.08997 * 108.13079 * 327.64290 * 25 16 15 47 47 H 1.09001 * 107.96551 * 211.03515 * 25 16 15 48 48 H 1.08999 * 109.56757 * 199.64637 * 26 25 16 49 49 H 1.09001 * 109.57161 * 79.27816 * 26 25 16 50 50 H 1.09009 * 109.25524 * 201.86247 * 27 26 25 51 51 H 1.08994 * 109.25684 * 82.43027 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 0.0050 5 7 3.4866 1.1672 -0.0056 6 6 4.2191 2.4359 -0.0050 7 6 3.8443 3.2418 -1.2505 8 6 3.8547 3.2347 1.2479 9 6 5.7007 2.1606 -0.0126 10 8 6.4513 2.8975 -0.6162 11 7 6.1916 1.0954 0.6515 12 6 7.6320 0.8281 0.6446 13 6 7.9211 -0.4297 1.4663 14 1 7.3858 -1.2673 1.0190 15 6 9.3624 -0.7083 1.4062 16 7 9.6063 -1.9170 2.2622 17 6 9.9732 -3.1106 1.7000 18 1 10.5136 -3.8397 2.2854 19 6 9.6505 -3.3832 0.3777 20 7 8.6964 -2.7022 -0.2208 21 14 10.5704 -4.7168 -0.5522 22 1 11.5884 -5.3293 0.3388 23 1 9.6121 -5.7592 -0.9996 24 1 11.2424 -4.1216 -1.7352 25 6 9.4477 -1.7961 3.6825 26 6 8.0265 -2.0799 4.2413 27 6 6.9768 -1.4551 3.2842 28 8 7.4317 -0.2314 2.7885 29 1 -0.3634 -1.0277 -0.0049 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5180 -0.8875 32 1 1.9500 -0.8401 -0.0040 33 1 3.9716 0.3271 -0.0093 34 1 2.7726 3.4409 -1.2455 35 1 4.3896 4.1855 -1.2503 36 1 4.1039 2.6726 -2.1431 37 1 4.1216 2.6607 2.1352 38 1 4.3993 4.1788 1.2481 39 1 2.7830 3.4339 1.2530 40 1 5.5911 0.5059 1.1340 41 1 7.9686 0.6769 -0.3811 42 1 8.1610 1.6761 1.0794 43 1 9.6592 -0.9160 0.3782 44 1 9.9230 0.1432 1.7922 45 1 8.4712 -2.8924 -1.1448 46 1 9.7293 -0.7832 3.9702 47 1 10.1434 -2.4871 4.1585 48 1 7.9281 -1.6351 5.2315 49 1 7.8675 -3.1563 4.3051 50 1 6.0439 -1.2991 3.8262 51 1 6.7987 -2.1362 2.4521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150777515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:53 Heat of formation + Delta-G solvation = -72.793722 kcal Electronic energy + Delta-G solvation = -32347.881660 eV Core-core repulsion = 28090.911007 eV Total energy + Delta-G solvation = -4256.970653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83179 -39.52945 -38.84005 -35.90205 -35.11738 -34.73051 -34.53926 -32.22064 -31.46013 -31.21532 -28.75172 -27.27011 -26.69789 -25.85291 -25.39149 -23.49597 -22.23531 -21.13321 -20.82602 -19.72491 -19.50214 -18.94835 -17.63113 -17.12948 -16.16482 -15.75443 -15.66701 -15.57571 -15.07703 -14.99597 -14.70164 -14.36423 -14.29522 -14.05582 -13.91440 -13.57526 -13.39369 -13.15167 -12.95697 -12.56798 -12.48658 -12.29663 -12.25414 -12.09159 -11.99539 -11.84708 -11.48105 -11.34948 -11.29198 -10.92549 -10.81345 -10.52789 -10.32353 -10.21170 -10.03767 -9.76468 -9.63596 -9.52831 -9.47160 -9.10541 -8.89477 -8.81378 -8.57974 -6.89523 -5.99868 -3.38037 2.32638 2.83397 3.05276 3.25643 3.27351 3.37106 3.38784 4.02852 4.37202 4.56744 4.65791 4.94322 4.97622 5.00707 5.16285 5.21315 5.31003 5.52720 5.60373 5.63703 5.71042 5.74187 5.76021 5.84215 5.88052 5.91361 6.05008 6.09263 6.24081 6.25814 6.27801 6.32719 6.36431 6.39292 6.46056 6.59418 6.62138 6.65327 6.74027 6.82127 6.88904 7.03551 7.25196 7.61955 7.65666 7.79449 8.04238 8.24724 8.28794 8.43250 8.99996 9.68068 10.22251 11.09390 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.003117 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.955224 B = 8980.293154 C = 9182.844041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.752 5.752 3 C 0.709 3.291 4 O -0.584 6.584 5 N -0.741 5.741 6 C 0.181 3.819 7 C -0.149 4.149 8 C -0.159 4.159 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.710 5.710 12 C 0.118 3.882 13 C 0.061 3.939 14 H 0.107 0.893 15 C 0.142 3.858 16 N -0.588 5.588 17 C -0.247 4.247 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.909 5.909 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.160 3.840 26 C -0.171 4.171 27 C 0.067 3.933 28 O -0.369 6.369 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.398 0.602 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.020 0.980 45 H 0.254 0.746 46 H 0.032 0.968 47 H 0.033 0.967 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 4.469 1.985 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.409 3.591 4 O -0.462 6.462 5 N -0.399 5.399 6 C 0.091 3.909 7 C -0.208 4.208 8 C -0.218 4.218 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.361 5.361 12 C -0.005 4.005 13 C 0.002 3.998 14 H 0.124 0.876 15 C 0.017 3.983 16 N -0.308 5.308 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.031 3.969 26 C -0.213 4.213 27 C -0.011 4.011 28 O -0.288 6.288 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.232 0.768 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.233 0.767 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.105 6.129 1.488 14.544 hybrid contribution 0.554 -2.266 -0.313 2.354 sum -12.551 3.863 1.175 13.184 Atomic orbital electron populations 1.21382 0.78104 1.01976 1.02203 1.44969 1.07821 1.07286 1.80624 1.15858 0.81391 0.84346 0.77459 1.90862 1.67832 1.29928 1.57574 1.45327 1.04997 1.08975 1.80583 1.20408 0.87180 0.84380 0.98895 1.22065 1.03666 1.00143 0.94901 1.22198 1.04705 0.99906 0.94968 1.20405 0.89632 0.81272 0.79039 1.90714 1.59217 1.47430 1.43430 1.46023 1.09888 1.28032 1.52155 1.21780 0.79346 0.98452 1.00965 1.22208 0.99874 0.96202 0.81469 0.87569 1.20746 0.91842 0.87019 0.98656 1.44114 1.78925 1.07119 1.00634 1.19317 1.28384 0.94421 0.95504 0.91233 1.24881 0.97224 0.98716 0.98702 1.69856 1.29109 1.43915 1.12555 0.86204 0.79479 0.81098 0.79860 1.20367 1.21846 1.21506 1.20385 0.92702 0.98127 0.85695 1.23573 0.99931 0.99755 0.98023 1.22345 0.94766 0.86299 0.97649 1.87526 1.80750 1.29720 1.30801 0.90709 0.92364 0.92412 0.76762 0.76731 0.89620 0.90702 0.92469 0.92089 0.91098 0.89039 0.76744 0.90134 0.91758 0.87780 0.96183 0.93553 0.94974 0.94862 0.93153 0.92483 0.93148 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 10.70 59.85 0.64 1.41 16 2 N -0.75 -6.48 5.72 -72.07 -0.41 -6.89 16 3 C 0.71 8.37 7.98 -86.92 -0.69 7.67 16 4 O -0.58 -8.57 12.55 5.29 0.07 -8.50 16 5 N -0.74 -8.23 4.86 -53.51 -0.26 -8.49 16 6 C 0.18 2.34 0.98 -132.98 -0.13 2.21 16 7 C -0.15 -1.98 7.93 37.16 0.29 -1.68 16 8 C -0.16 -1.97 8.38 37.15 0.31 -1.66 16 9 C 0.51 7.85 6.65 -10.98 -0.07 7.78 16 10 O -0.53 -9.92 16.09 5.57 0.09 -9.83 16 11 N -0.71 -10.49 5.11 -60.30 -0.31 -10.79 16 12 C 0.12 2.05 5.25 -4.04 -0.02 2.03 16 13 C 0.06 1.16 1.98 -29.65 -0.06 1.10 16 14 H 0.11 2.25 5.24 -51.93 -0.27 1.98 16 15 C 0.14 3.08 4.71 -4.94 -0.02 3.05 16 16 N -0.59 -13.53 2.61 -174.51 -0.46 -13.98 16 17 C -0.25 -6.21 9.62 -15.06 -0.14 -6.35 16 18 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 19 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 20 N -0.91 -22.60 9.56 55.49 0.53 -22.07 16 21 Si 0.90 20.23 29.59 -169.99 -5.03 15.20 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.16 3.25 5.33 -4.44 -0.02 3.22 16 26 C -0.17 -3.05 6.75 -24.34 -0.16 -3.21 16 27 C 0.07 1.17 6.38 38.32 0.24 1.42 16 28 O -0.37 -6.77 9.44 -31.95 -0.30 -7.08 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 2.53 8.84 -40.82 -0.36 2.17 16 33 H 0.40 3.88 7.25 -40.82 -0.30 3.59 16 34 H 0.09 1.17 6.16 -51.93 -0.32 0.85 16 35 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.20 6.16 -51.93 -0.32 0.88 16 40 H 0.40 5.24 7.00 -40.82 -0.29 4.95 16 41 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 6.25 8.31 -40.82 -0.34 5.91 16 46 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 47 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 51 H 0.06 1.21 6.66 -51.93 -0.35 0.87 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -29.39 395.46 -8.42 -37.82 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -8.37 Total: 11.69 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 0.07 Total: 16.97 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.91 Total: -62.23 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.15 Total: -25.41 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.39 -8.42 -37.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150777515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.978 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds