Wall clock time and date at job start Wed Apr 1 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 119.99886 * 2 1 4 4 O 1.21584 * 120.00190 * 0.27374 * 3 2 1 5 5 N 1.34782 * 120.00086 * 180.27528 * 3 2 1 6 6 C 1.46497 * 120.00293 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47009 * 300.00047 * 6 5 3 8 8 C 1.52994 * 109.47262 * 59.99473 * 6 5 3 9 9 C 1.50695 * 109.47604 * 180.02562 * 6 5 3 10 10 O 1.21271 * 120.00578 * 144.99706 * 9 6 5 11 11 N 1.34785 * 119.99666 * 324.99547 * 9 6 5 12 12 C 1.46497 * 119.99913 * 180.02562 * 11 9 6 13 13 C 1.52999 * 109.46935 * 180.02562 * 12 11 9 14 14 H 1.09003 * 108.57442 * 59.99996 * 13 12 11 15 15 C 1.46917 * 108.62047 * 177.94430 * 13 12 11 16 16 N 1.50107 * 106.78472 * 178.04090 * 15 13 12 17 17 C 1.36939 * 120.75113 * 111.17909 * 16 15 13 18 18 H 1.07999 * 120.00224 * 155.72022 * 17 16 15 19 19 C 1.38818 * 119.99573 * 335.71923 * 17 16 15 20 20 N 1.31615 * 120.00287 * 340.85777 * 19 17 16 21 21 Si 1.86797 * 119.99707 * 160.86273 * 19 17 16 22 22 H 1.48502 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47300 * 119.99684 * 21 19 17 24 24 H 1.48506 * 109.46980 * 239.99709 * 21 19 17 25 25 C 1.43423 * 118.61235 * 291.15394 * 16 15 13 26 26 C 1.55325 * 116.23764 * 89.40858 * 25 16 15 27 27 C 1.55190 * 108.87087 * 319.46041 * 26 25 16 28 28 O 1.39646 * 110.57149 * 322.14416 * 27 26 25 29 29 H 1.09009 * 109.47245 * 179.72471 * 1 2 3 30 30 H 1.09000 * 109.47054 * 299.72046 * 1 2 3 31 31 H 1.08993 * 109.47335 * 59.72938 * 1 2 3 32 32 H 0.97005 * 120.00039 * 180.27081 * 2 1 3 33 33 H 0.97005 * 119.99895 * 359.97438 * 5 3 2 34 34 H 1.09003 * 109.47324 * 59.99441 * 7 6 5 35 35 H 1.08998 * 109.47120 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46788 * 300.00161 * 7 6 5 37 37 H 1.08999 * 109.47276 * 60.00327 * 8 6 5 38 38 H 1.09000 * 109.47261 * 180.02562 * 8 6 5 39 39 H 1.08998 * 109.47654 * 300.00504 * 8 6 5 40 40 H 0.97002 * 119.99546 * 0.02562 * 11 9 6 41 41 H 1.09007 * 109.47160 * 299.99683 * 12 11 9 42 42 H 1.08997 * 109.47422 * 59.99951 * 12 11 9 43 43 H 1.08997 * 109.99116 * 297.23626 * 15 13 12 44 44 H 1.09006 * 109.99276 * 58.60152 * 15 13 12 45 45 H 0.96991 * 120.00485 * 179.97438 * 20 19 17 46 46 H 1.08997 * 108.13079 * 327.64290 * 25 16 15 47 47 H 1.09001 * 107.96551 * 211.03515 * 25 16 15 48 48 H 1.08999 * 109.56757 * 199.64637 * 26 25 16 49 49 H 1.09001 * 109.57161 * 79.27816 * 26 25 16 50 50 H 1.09009 * 109.25524 * 201.86247 * 27 26 25 51 51 H 1.08994 * 109.25684 * 82.43027 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 0.0050 5 7 3.4866 1.1672 -0.0056 6 6 4.2191 2.4359 -0.0050 7 6 3.8443 3.2418 -1.2505 8 6 3.8547 3.2347 1.2479 9 6 5.7007 2.1606 -0.0126 10 8 6.4513 2.8975 -0.6162 11 7 6.1916 1.0954 0.6515 12 6 7.6320 0.8281 0.6446 13 6 7.9211 -0.4297 1.4663 14 1 7.3858 -1.2673 1.0190 15 6 9.3624 -0.7083 1.4062 16 7 9.6063 -1.9170 2.2622 17 6 9.9732 -3.1106 1.7000 18 1 10.5136 -3.8397 2.2854 19 6 9.6505 -3.3832 0.3777 20 7 8.6964 -2.7022 -0.2208 21 14 10.5704 -4.7168 -0.5522 22 1 11.5884 -5.3293 0.3388 23 1 9.6121 -5.7592 -0.9996 24 1 11.2424 -4.1216 -1.7352 25 6 9.4477 -1.7961 3.6825 26 6 8.0265 -2.0799 4.2413 27 6 6.9768 -1.4551 3.2842 28 8 7.4317 -0.2314 2.7885 29 1 -0.3634 -1.0277 -0.0049 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5180 -0.8875 32 1 1.9500 -0.8401 -0.0040 33 1 3.9716 0.3271 -0.0093 34 1 2.7726 3.4409 -1.2455 35 1 4.3896 4.1855 -1.2503 36 1 4.1039 2.6726 -2.1431 37 1 4.1216 2.6607 2.1352 38 1 4.3993 4.1788 1.2481 39 1 2.7830 3.4339 1.2530 40 1 5.5911 0.5059 1.1340 41 1 7.9686 0.6769 -0.3811 42 1 8.1610 1.6761 1.0794 43 1 9.6592 -0.9160 0.3782 44 1 9.9230 0.1432 1.7922 45 1 8.4712 -2.8924 -1.1448 46 1 9.7293 -0.7832 3.9702 47 1 10.1434 -2.4871 4.1585 48 1 7.9281 -1.6351 5.2315 49 1 7.8675 -3.1563 4.3051 50 1 6.0439 -1.2991 3.8262 51 1 6.7987 -2.1362 2.4521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150777515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:52 Heat of formation + Delta-G solvation = -94.400828 kcal Electronic energy + Delta-G solvation = -32348.818614 eV Core-core repulsion = 28090.911007 eV Total energy + Delta-G solvation = -4257.907608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91828 -40.81736 -40.18883 -36.91929 -36.79693 -36.09480 -35.46280 -33.82825 -32.91455 -32.40727 -30.32578 -28.32464 -27.61172 -27.15463 -27.05510 -24.90869 -23.62653 -22.45105 -22.00007 -21.30633 -20.68939 -19.90175 -18.91286 -18.66846 -17.70557 -17.04250 -16.79743 -16.65862 -16.47955 -16.28442 -16.03692 -15.83449 -15.54176 -15.31830 -15.11673 -14.85853 -14.68702 -14.47981 -14.17547 -14.00175 -13.67723 -13.55812 -13.34542 -13.27747 -13.17522 -12.96332 -12.93316 -12.88159 -12.63982 -12.49543 -12.36931 -12.26041 -11.91904 -11.77046 -11.41756 -11.35713 -11.18166 -10.78832 -10.55366 -10.42291 -10.26884 -10.16266 -9.88141 -8.70682 -7.89077 -5.28830 1.27047 1.47143 1.53439 1.59838 1.79221 1.98569 2.14328 2.52866 3.11901 3.25048 3.28684 3.46038 3.53418 3.89070 3.93526 4.16284 4.28388 4.38504 4.42146 4.47815 4.56437 4.62134 4.69160 4.72588 4.74562 4.74967 4.78467 4.80484 4.82249 4.94857 5.01455 5.08592 5.13131 5.19585 5.20024 5.22406 5.30396 5.35040 5.37844 5.42773 5.51048 5.55089 5.69983 5.88346 6.36690 6.41307 6.53022 6.99684 7.05991 7.12595 7.55549 7.84131 8.36923 9.17110 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.003117 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.955224 B = 8980.293154 C = 9182.844041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.740 5.740 3 C 0.705 3.295 4 O -0.614 6.614 5 N -0.734 5.734 6 C 0.188 3.812 7 C -0.144 4.144 8 C -0.153 4.153 9 C 0.517 3.483 10 O -0.566 6.566 11 N -0.699 5.699 12 C 0.130 3.870 13 C 0.081 3.919 14 H 0.089 0.911 15 C 0.143 3.857 16 N -0.601 5.601 17 C -0.262 4.262 18 H 0.061 0.939 19 C -0.032 4.032 20 N -0.914 5.914 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.294 1.294 25 C 0.153 3.847 26 C -0.165 4.165 27 C 0.068 3.932 28 O -0.367 6.367 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.412 0.588 33 H 0.405 0.595 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.409 0.591 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.023 0.977 45 H 0.251 0.749 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.086 0.914 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 3.873 2.918 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.396 5.396 3 C 0.405 3.595 4 O -0.495 6.495 5 N -0.393 5.393 6 C 0.098 3.902 7 C -0.202 4.202 8 C -0.211 4.211 9 C 0.302 3.698 10 O -0.444 6.444 11 N -0.350 5.350 12 C 0.005 3.995 13 C 0.022 3.978 14 H 0.107 0.893 15 C 0.018 3.982 16 N -0.323 5.323 17 C -0.392 4.392 18 H 0.079 0.921 19 C -0.228 4.228 20 N -0.560 5.560 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.221 1.221 25 C 0.025 3.975 26 C -0.206 4.206 27 C -0.010 4.010 28 O -0.286 6.286 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.247 0.753 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.245 0.755 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.397 5.481 2.455 15.599 hybrid contribution 0.972 -2.102 -0.565 2.384 sum -13.425 3.379 1.890 13.972 Atomic orbital electron populations 1.21535 0.77026 1.03938 1.01437 1.44948 1.08472 1.06863 1.79335 1.16017 0.81331 0.84801 0.77378 1.90845 1.68357 1.31274 1.58998 1.45160 1.04962 1.08606 1.80575 1.20238 0.85522 0.85217 0.99187 1.22004 1.03330 1.00036 0.94856 1.22141 1.04315 0.99979 0.94678 1.20745 0.90410 0.80564 0.78103 1.90703 1.60304 1.48572 1.44809 1.45852 1.08965 1.28123 1.52085 1.21467 0.80781 0.97434 0.99770 1.21762 0.97915 0.96138 0.82030 0.89349 1.20677 0.93611 0.86713 0.97150 1.44214 1.79533 1.06763 1.01747 1.19409 1.28728 0.95088 0.95989 0.92118 1.25388 0.97865 1.00410 0.99181 1.69958 1.29338 1.44441 1.12282 0.85407 0.78391 0.79228 0.78474 1.20271 1.21950 1.22101 1.20493 0.94480 0.98133 0.84348 1.23487 0.97955 0.99949 0.99190 1.22406 0.96044 0.85425 0.97084 1.87528 1.80650 1.30174 1.30226 0.87406 0.93046 0.93287 0.75257 0.75838 0.89875 0.90956 0.92961 0.91442 0.90914 0.89525 0.75507 0.91486 0.92140 0.90282 0.95880 0.93907 0.94785 0.95301 0.90537 0.92728 0.89586 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.29 10.70 127.77 1.37 2.66 16 2 N -0.74 -11.23 5.72 -500.20 -2.86 -14.09 16 3 C 0.70 15.58 7.98 179.05 1.43 17.01 16 4 O -0.61 -17.45 12.55 -3.98 -0.05 -17.50 16 5 N -0.73 -15.23 4.86 -441.46 -2.15 -17.38 16 6 C 0.19 4.68 0.98 2.86 0.00 4.68 16 7 C -0.14 -3.74 7.93 71.98 0.57 -3.17 16 8 C -0.15 -3.57 8.38 71.98 0.60 -2.96 16 9 C 0.52 15.39 6.65 87.65 0.58 15.97 16 10 O -0.57 -20.96 16.09 -3.00 -0.05 -21.01 16 11 N -0.70 -19.87 5.11 -463.07 -2.37 -22.23 16 12 C 0.13 4.46 5.25 86.38 0.45 4.91 16 13 C 0.08 3.01 1.98 28.71 0.06 3.07 16 14 H 0.09 3.71 5.24 -2.39 -0.01 3.70 16 15 C 0.14 6.22 4.71 83.79 0.39 6.62 16 16 N -0.60 -27.63 2.61 -706.03 -1.84 -29.47 16 17 C -0.26 -13.23 9.62 84.03 0.81 -12.42 16 18 H 0.06 3.10 7.87 -2.91 -0.02 3.08 16 19 C -0.03 -1.59 4.93 84.86 0.42 -1.17 16 20 N -0.91 -45.64 9.56 21.65 0.21 -45.44 16 21 Si 0.96 41.63 29.59 68.60 2.03 43.66 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 C 0.15 6.08 5.33 87.75 0.47 6.54 16 26 C -0.16 -5.47 6.75 32.14 0.22 -5.26 16 27 C 0.07 2.20 6.38 72.73 0.46 2.67 16 28 O -0.37 -12.75 9.44 -137.25 -1.30 -14.04 16 29 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.41 4.18 8.84 -92.70 -0.82 3.36 16 33 H 0.41 7.18 7.25 -92.70 -0.67 6.50 16 34 H 0.08 2.23 6.16 -2.39 -0.01 2.22 16 35 H 0.07 1.90 7.87 -2.39 -0.02 1.88 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 2.17 6.16 -2.39 -0.01 2.15 16 40 H 0.41 9.99 7.00 -92.71 -0.65 9.35 16 41 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.08 3.85 6.03 -2.39 -0.01 3.83 16 44 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.25 12.37 8.31 -92.71 -0.77 11.60 16 46 H 0.03 1.31 7.98 -2.39 -0.02 1.29 16 47 H 0.03 1.14 7.95 -2.39 -0.02 1.12 16 48 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 51 H 0.04 1.52 6.66 -2.39 -0.02 1.50 16 Total: -1.00 -62.49 395.46 -1.71 -64.21 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -1.18 Total: 34.13 kcal Atomic # 6 Polarization: 31.32 SS G_CDS: 7.84 Total: 39.16 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -9.01 Total: -128.61 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -1.39 Total: -52.55 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -62.49 -1.71 -64.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150777515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.193 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds