Wall clock time and date at job start Wed Apr 1 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47121 * 2 1 4 4 C 1.53002 * 109.47015 * 240.00667 * 2 1 3 5 5 C 1.47196 * 109.47414 * 120.00483 * 2 1 3 6 6 C 2.64599 * 109.47353 * 120.00387 * 2 1 3 7 7 C 4.07795 * 109.47317 * 120.00351 * 2 1 3 8 8 O 1.21623 * 119.99885 * 330.64386 * 7 6 5 9 9 N 1.34776 * 120.00091 * 150.63493 * 7 6 5 10 10 C 1.46503 * 119.99805 * 0.02562 * 9 7 6 11 11 C 1.52992 * 109.46780 * 269.99277 * 10 9 7 12 12 N 1.46503 * 109.46780 * 180.02562 * 11 10 9 13 13 C 1.36943 * 119.99874 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00082 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99756 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47638 * 89.99714 * 17 15 13 19 19 H 1.48505 * 109.46879 * 209.99460 * 17 15 13 20 20 H 1.48505 * 109.47521 * 329.99466 * 17 15 13 21 21 C 1.46496 * 119.99885 * 180.02562 * 9 7 6 22 22 C 1.52995 * 109.47070 * 90.00634 * 21 9 7 23 23 C 1.50707 * 109.47301 * 179.97438 * 22 21 9 24 24 C 1.38238 * 119.99792 * 90.00016 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97953 * 23 22 21 29 29 H 1.09001 * 109.46706 * 299.99768 * 1 2 3 30 30 H 1.09002 * 109.47082 * 59.99298 * 1 2 3 31 31 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47264 * 300.00022 * 3 2 1 34 34 H 1.09001 * 109.47141 * 60.00498 * 3 2 1 35 35 H 1.08999 * 109.47007 * 299.99783 * 4 2 1 36 36 H 1.09002 * 109.47625 * 59.99813 * 4 2 1 37 37 H 1.09001 * 109.47475 * 180.02562 * 4 2 1 38 38 H 1.09003 * 109.47109 * 29.99830 * 10 9 7 39 39 H 1.09008 * 109.46723 * 149.99386 * 10 9 7 40 40 H 1.09003 * 109.47751 * 300.00159 * 11 10 9 41 41 H 1.09004 * 109.46964 * 60.00681 * 11 10 9 42 42 H 0.97001 * 120.00420 * 0.02562 * 12 11 10 43 43 H 0.96998 * 119.99836 * 180.02562 * 16 15 13 44 44 H 1.08995 * 109.47623 * 330.00403 * 21 9 7 45 45 H 1.09004 * 109.47046 * 210.00410 * 21 9 7 46 46 H 1.09005 * 109.47610 * 60.00011 * 22 21 9 47 47 H 1.09000 * 109.47256 * 299.99352 * 22 21 9 48 48 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 51 51 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 52 52 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0207 -0.6940 1.2018 6 6 2.4121 -1.2475 2.1603 7 6 2.8895 -1.9225 3.3295 8 8 2.0992 -2.3950 4.1241 9 7 4.2145 -2.0345 3.5492 10 6 5.1664 -1.4651 2.5922 11 6 5.5130 -2.5130 1.5328 12 7 6.4653 -1.9438 0.5761 13 6 6.9233 -2.7024 -0.4679 14 1 6.5820 -3.7202 -0.5863 15 6 7.8252 -2.1629 -1.3747 16 7 8.2658 -2.8922 -2.3780 17 14 8.4148 -0.4022 -1.1703 18 1 9.6352 -0.3838 -0.3244 19 1 8.7279 0.1728 -2.5033 20 1 7.3502 0.4042 -0.5210 21 6 4.7028 -2.7257 4.7450 22 6 4.8881 -4.2123 4.4349 23 6 5.3910 -4.9233 5.6649 24 6 4.4932 -5.4608 6.5682 25 6 4.9545 -6.1133 7.6961 26 6 6.3136 -6.2290 7.9204 27 6 7.2114 -5.6869 7.0199 28 6 6.7501 -5.0383 5.8896 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2492 38 1 4.7206 -0.5948 2.1104 39 1 6.0735 -1.1649 3.1169 40 1 5.9588 -3.3832 2.0146 41 1 4.6058 -2.8131 1.0081 42 1 6.7721 -1.0297 0.6826 43 1 8.8963 -2.5152 -3.0113 44 1 3.9795 -2.6103 5.5522 45 1 5.6575 -2.2961 5.0486 46 1 5.6115 -4.3278 3.6277 47 1 3.9334 -4.6420 4.1314 48 1 3.4313 -5.3708 6.3927 49 1 4.2531 -6.5329 8.4020 50 1 6.6740 -6.7392 8.8015 51 1 8.2732 -5.7733 7.1973 52 1 7.4515 -4.6191 5.1835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162806671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:46 Heat of formation + Delta-G solvation = 41.135521 kcal Electronic energy + Delta-G solvation = -29383.825996 eV Core-core repulsion = 25542.644949 eV Total energy + Delta-G solvation = -3841.181047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.09635 -39.18909 -37.55967 -36.48032 -34.69971 -33.37839 -32.03273 -31.46846 -30.94894 -29.06151 -27.89510 -27.45741 -27.32968 -24.99740 -23.74444 -22.63799 -22.48582 -21.59986 -20.89767 -20.14784 -18.15441 -17.41921 -16.83046 -16.54732 -15.86720 -15.45611 -15.24218 -15.05183 -14.61227 -14.37797 -14.35153 -14.05454 -13.92582 -13.83205 -13.50692 -13.29515 -13.14564 -12.90796 -12.66803 -12.58325 -12.50755 -12.27501 -11.86718 -11.78691 -11.61435 -11.49842 -11.39616 -11.33857 -11.29343 -11.22629 -11.03814 -10.93014 -10.67890 -10.39198 -10.25071 -10.21078 -10.00477 -9.66686 -9.00598 -8.98876 -8.96179 -8.55029 -7.32669 -5.82718 -3.19870 1.25982 1.33360 1.63657 2.34086 3.00975 3.30570 3.33357 3.39990 3.59316 3.72217 3.93489 4.52477 4.72059 4.75522 4.80171 4.81628 4.82321 4.92463 4.99817 5.06322 5.15118 5.18668 5.26402 5.43185 5.44148 5.45841 5.48729 5.49211 5.52008 5.54901 5.61135 5.61785 5.72315 5.74524 5.76775 5.81213 5.88286 5.90555 5.97320 6.02663 6.10950 6.14143 6.30551 6.33551 6.41149 6.43664 6.54249 6.63811 6.65845 6.94270 7.26220 7.33791 7.91631 8.06891 8.34978 9.12945 9.84809 10.03443 11.35424 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.006985 B = 0.003617 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4007.698524 B = 7739.878490 C =11052.524604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.060 4.060 6 C -0.224 4.224 7 C 0.639 3.361 8 O -0.531 6.531 9 N -0.596 5.596 10 C 0.096 3.904 11 C 0.143 3.857 12 N -0.752 5.752 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.008 3.992 16 N -0.932 5.932 17 Si 0.883 3.117 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.127 3.873 22 C -0.104 4.104 23 C -0.075 4.075 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.114 4.114 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.123 0.877 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.121 0.879 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 3.056 14.709 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.036 3.964 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.062 4.062 6 C -0.227 4.227 7 C 0.428 3.572 8 O -0.409 6.409 9 N -0.327 5.327 10 C -0.027 4.027 11 C 0.015 3.985 12 N -0.399 5.399 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.188 4.188 16 N -0.579 5.579 17 Si 0.713 3.287 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.005 3.995 22 C -0.142 4.142 23 C -0.075 4.075 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.139 0.861 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.711 2.613 14.991 18.609 hybrid contribution 0.670 1.106 -0.051 1.294 sum -10.041 3.719 14.941 18.382 Atomic orbital electron populations 1.21906 0.92614 1.02771 1.02479 1.17957 0.95708 0.94445 0.88246 1.21899 1.02201 0.93282 1.02463 1.21920 1.02974 1.00376 0.94825 1.22502 0.97548 0.93259 0.92908 1.20473 1.02550 1.02888 0.96793 1.14730 0.81969 0.78286 0.82183 1.90813 1.55259 1.48649 1.46180 1.47718 1.05046 1.55960 1.23987 1.21957 0.92572 0.97301 0.90907 1.21033 0.93318 0.94494 0.89654 1.42556 1.52907 1.13561 1.30832 1.19000 1.20385 0.96870 1.01147 0.89242 1.24656 0.99423 0.97578 0.97192 1.69698 1.35774 1.36106 1.16364 0.86579 0.78830 0.86141 0.77135 1.21019 1.21656 1.20321 1.21486 1.00364 0.91000 0.86672 1.21122 1.02848 0.94662 0.95562 1.19808 0.93430 0.98189 0.96111 1.21139 0.99727 0.98072 0.94298 1.21130 0.95645 0.99555 0.97614 1.21130 0.93476 1.00436 0.99524 1.21153 0.99634 0.98330 0.94671 1.21169 0.95112 0.99250 0.97663 0.92183 0.91269 0.91964 0.91575 0.91150 0.92253 0.91960 0.91305 0.90833 0.90176 0.89774 0.94829 0.95310 0.80688 0.92979 0.89503 0.89911 0.89587 0.90346 0.85935 0.86274 0.86391 0.86140 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.43 37.16 0.31 -1.01 16 2 C 0.04 0.42 0.95 -157.29 -0.15 0.27 16 3 C -0.14 -1.42 8.43 37.16 0.31 -1.10 16 4 C -0.14 -1.73 8.43 37.16 0.31 -1.41 16 5 C -0.06 -0.86 11.77 -37.12 -0.44 -1.30 16 6 C -0.22 -3.58 11.70 -38.84 -0.45 -4.03 16 7 C 0.64 10.44 7.53 -14.34 -0.11 10.34 16 8 O -0.53 -9.75 16.66 5.26 0.09 -9.67 16 9 N -0.60 -8.51 2.47 -176.57 -0.44 -8.94 16 10 C 0.10 1.41 5.38 -4.04 -0.02 1.39 16 11 C 0.14 2.66 6.58 -4.04 -0.03 2.63 16 12 N -0.75 -16.95 5.41 -59.91 -0.32 -17.28 16 13 C -0.24 -6.69 10.47 -15.05 -0.16 -6.85 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 16 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 17 Si 0.88 21.18 27.73 -169.99 -4.71 16.46 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 21 C 0.13 1.57 5.43 -4.05 -0.02 1.55 16 22 C -0.10 -1.31 5.67 -27.88 -0.16 -1.46 16 23 C -0.07 -0.89 5.13 -104.62 -0.54 -1.42 16 24 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 28 C -0.11 -1.29 9.70 -39.58 -0.38 -1.68 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.19 6.89 -51.93 -0.36 0.83 16 39 H 0.08 1.11 7.89 -51.92 -0.41 0.70 16 40 H 0.03 0.63 6.26 -51.93 -0.33 0.31 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.36 7.81 5.53 -40.82 -0.23 7.58 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 45 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 46 H 0.09 1.16 6.20 -51.93 -0.32 0.84 16 47 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 48 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 52 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 432.19 15.07 6.51 6.51 Total: -1.00 -32.65 432.19 -10.08 -42.72 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.79 Total: 8.52 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.19 Total: -10.52 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.01 Total: -54.02 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 6.51 Total: 6.51 kcal Total: -32.65 -10.08 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162806671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.859 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds