Wall clock time and date at job start Wed Apr 1 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47121 * 2 1 4 4 C 1.53002 * 109.47015 * 240.00667 * 2 1 3 5 5 C 1.47196 * 109.47414 * 120.00483 * 2 1 3 6 6 C 2.64599 * 109.47353 * 120.00387 * 2 1 3 7 7 C 4.07795 * 109.47317 * 120.00351 * 2 1 3 8 8 O 1.21623 * 119.99885 * 330.64386 * 7 6 5 9 9 N 1.34776 * 120.00091 * 150.63493 * 7 6 5 10 10 C 1.46503 * 119.99805 * 0.02562 * 9 7 6 11 11 C 1.52992 * 109.46780 * 269.99277 * 10 9 7 12 12 N 1.46503 * 109.46780 * 180.02562 * 11 10 9 13 13 C 1.36943 * 119.99874 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00082 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99756 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47638 * 89.99714 * 17 15 13 19 19 H 1.48505 * 109.46879 * 209.99460 * 17 15 13 20 20 H 1.48505 * 109.47521 * 329.99466 * 17 15 13 21 21 C 1.46496 * 119.99885 * 180.02562 * 9 7 6 22 22 C 1.52995 * 109.47070 * 90.00634 * 21 9 7 23 23 C 1.50707 * 109.47301 * 179.97438 * 22 21 9 24 24 C 1.38238 * 119.99792 * 90.00016 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97953 * 23 22 21 29 29 H 1.09001 * 109.46706 * 299.99768 * 1 2 3 30 30 H 1.09002 * 109.47082 * 59.99298 * 1 2 3 31 31 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47264 * 300.00022 * 3 2 1 34 34 H 1.09001 * 109.47141 * 60.00498 * 3 2 1 35 35 H 1.08999 * 109.47007 * 299.99783 * 4 2 1 36 36 H 1.09002 * 109.47625 * 59.99813 * 4 2 1 37 37 H 1.09001 * 109.47475 * 180.02562 * 4 2 1 38 38 H 1.09003 * 109.47109 * 29.99830 * 10 9 7 39 39 H 1.09008 * 109.46723 * 149.99386 * 10 9 7 40 40 H 1.09003 * 109.47751 * 300.00159 * 11 10 9 41 41 H 1.09004 * 109.46964 * 60.00681 * 11 10 9 42 42 H 0.97001 * 120.00420 * 0.02562 * 12 11 10 43 43 H 0.96998 * 119.99836 * 180.02562 * 16 15 13 44 44 H 1.08995 * 109.47623 * 330.00403 * 21 9 7 45 45 H 1.09004 * 109.47046 * 210.00410 * 21 9 7 46 46 H 1.09005 * 109.47610 * 60.00011 * 22 21 9 47 47 H 1.09000 * 109.47256 * 299.99352 * 22 21 9 48 48 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 51 51 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 52 52 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0207 -0.6940 1.2018 6 6 2.4121 -1.2475 2.1603 7 6 2.8895 -1.9225 3.3295 8 8 2.0992 -2.3950 4.1241 9 7 4.2145 -2.0345 3.5492 10 6 5.1664 -1.4651 2.5922 11 6 5.5130 -2.5130 1.5328 12 7 6.4653 -1.9438 0.5761 13 6 6.9233 -2.7024 -0.4679 14 1 6.5820 -3.7202 -0.5863 15 6 7.8252 -2.1629 -1.3747 16 7 8.2658 -2.8922 -2.3780 17 14 8.4148 -0.4022 -1.1703 18 1 9.6352 -0.3838 -0.3244 19 1 8.7279 0.1728 -2.5033 20 1 7.3502 0.4042 -0.5210 21 6 4.7028 -2.7257 4.7450 22 6 4.8881 -4.2123 4.4349 23 6 5.3910 -4.9233 5.6649 24 6 4.4932 -5.4608 6.5682 25 6 4.9545 -6.1133 7.6961 26 6 6.3136 -6.2290 7.9204 27 6 7.2114 -5.6869 7.0199 28 6 6.7501 -5.0383 5.8896 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2492 38 1 4.7206 -0.5948 2.1104 39 1 6.0735 -1.1649 3.1169 40 1 5.9588 -3.3832 2.0146 41 1 4.6058 -2.8131 1.0081 42 1 6.7721 -1.0297 0.6826 43 1 8.8963 -2.5152 -3.0113 44 1 3.9795 -2.6103 5.5522 45 1 5.6575 -2.2961 5.0486 46 1 5.6115 -4.3278 3.6277 47 1 3.9334 -4.6420 4.1314 48 1 3.4313 -5.3708 6.3927 49 1 4.2531 -6.5329 8.4020 50 1 6.6740 -6.7392 8.8015 51 1 8.2732 -5.7733 7.1973 52 1 7.4515 -4.6191 5.1835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162806671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:44 Heat of formation + Delta-G solvation = 24.753964 kcal Electronic energy + Delta-G solvation = -29384.536354 eV Core-core repulsion = 25542.644949 eV Total energy + Delta-G solvation = -3841.891405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.30293 -40.07208 -38.49473 -37.88979 -36.33309 -34.54782 -33.47577 -33.08641 -31.75788 -30.33202 -29.25239 -28.23693 -28.21272 -26.13519 -25.44057 -23.59325 -23.44008 -23.22568 -21.86487 -21.23278 -19.92796 -18.85959 -17.89276 -17.59017 -16.90674 -16.69572 -16.44645 -16.18729 -15.96443 -15.64830 -15.38703 -15.27318 -15.20624 -15.18316 -14.73027 -14.38429 -14.29127 -14.07822 -13.87177 -13.48869 -13.36776 -13.34060 -13.23965 -13.02445 -12.76899 -12.73137 -12.64695 -12.61003 -12.33899 -12.27430 -12.12921 -12.09112 -11.97828 -11.81856 -11.71450 -11.56521 -11.32608 -11.18063 -10.96805 -10.11843 -9.81102 -9.53138 -9.34816 -8.02235 -5.38528 0.35980 0.47127 0.51085 1.17196 1.39820 1.44288 1.51582 1.82863 2.37511 2.49480 2.79996 2.88811 3.29098 3.62069 3.74190 3.88733 3.92617 3.93808 3.94666 3.97174 4.04591 4.14240 4.18164 4.27262 4.29555 4.31931 4.39354 4.51049 4.58757 4.65927 4.70868 4.72290 4.78018 4.81212 4.84313 4.92984 4.94148 4.98427 5.04924 5.06918 5.17176 5.19160 5.22636 5.32942 5.34755 5.36420 5.59623 5.63830 5.73132 5.73339 6.03092 6.13587 6.16910 6.19562 6.81347 7.06030 7.77415 7.99988 9.19084 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.006985 B = 0.003617 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4007.698524 B = 7739.878490 C =11052.524604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.031 3.969 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.044 4.044 6 C -0.266 4.266 7 C 0.637 3.363 8 O -0.559 6.559 9 N -0.588 5.588 10 C 0.108 3.892 11 C 0.147 3.853 12 N -0.749 5.749 13 C -0.237 4.237 14 H 0.049 0.951 15 C -0.058 4.058 16 N -0.983 5.983 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.296 1.296 20 H -0.245 1.245 21 C 0.127 3.873 22 C -0.094 4.094 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.127 4.127 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.033 0.967 41 H 0.009 0.991 42 H 0.370 0.630 43 H 0.259 0.741 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.120 0.880 49 H 0.141 0.859 50 H 0.144 0.856 51 H 0.140 0.860 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 5.315 16.244 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 C -0.196 4.196 4 C -0.199 4.199 5 C -0.046 4.046 6 C -0.269 4.269 7 C 0.426 3.574 8 O -0.440 6.440 9 N -0.318 5.318 10 C -0.015 4.015 11 C 0.020 3.980 12 N -0.396 5.396 13 C -0.368 4.368 14 H 0.067 0.933 15 C -0.250 4.250 16 N -0.633 5.633 17 Si 0.782 3.218 18 H -0.202 1.202 19 H -0.223 1.223 20 H -0.169 1.169 21 C 0.006 3.994 22 C -0.132 4.132 23 C -0.089 4.089 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.145 4.145 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.051 0.949 41 H 0.027 0.973 42 H 0.204 0.796 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.138 0.862 49 H 0.158 0.842 50 H 0.162 0.838 51 H 0.158 0.842 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.708 4.878 16.576 20.328 hybrid contribution 0.608 0.257 -0.541 0.853 sum -10.101 5.134 16.035 19.634 Atomic orbital electron populations 1.21906 0.90633 1.02822 1.04032 1.18256 0.97237 0.95011 0.86383 1.21910 1.01368 0.92159 1.04121 1.21912 1.01107 1.00458 0.96422 1.23334 0.96160 0.92200 0.92947 1.20664 1.04249 1.04288 0.97704 1.14896 0.82389 0.77983 0.82084 1.90784 1.55966 1.49993 1.47215 1.47722 1.04378 1.55540 1.24141 1.21813 0.93723 0.95769 0.90200 1.21059 0.91487 0.95747 0.89735 1.42420 1.53297 1.13587 1.30292 1.18892 1.19822 0.95732 1.02319 0.93277 1.25513 0.99901 1.02720 0.96821 1.69895 1.36973 1.38648 1.17767 0.85412 0.79135 0.80229 0.77045 1.20160 1.22322 1.16884 1.21637 1.01310 0.90715 0.85755 1.20958 1.01397 0.95044 0.95811 1.19759 0.94001 0.99099 0.95999 1.21251 0.99672 0.98760 0.95006 1.21424 0.96523 0.98915 0.97364 1.21486 0.93191 0.99786 1.00116 1.21448 1.00921 0.97695 0.94178 1.21284 0.94815 0.99951 0.98448 0.91741 0.88622 0.92721 0.92895 0.88701 0.91447 0.92948 0.88575 0.93618 0.89760 0.86960 0.94917 0.97340 0.79637 0.93228 0.89705 0.87511 0.90842 0.92275 0.86165 0.84163 0.83776 0.84185 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.43 71.98 0.61 -1.67 16 2 C 0.03 0.67 0.95 -53.99 -0.05 0.62 16 3 C -0.14 -2.44 8.43 71.98 0.61 -1.83 16 4 C -0.14 -3.30 8.43 71.98 0.61 -2.69 16 5 C -0.04 -1.26 11.77 31.12 0.37 -0.89 16 6 C -0.27 -8.60 11.70 30.01 0.35 -8.25 16 7 C 0.64 21.19 7.53 85.49 0.64 21.84 16 8 O -0.56 -21.15 16.66 -4.10 -0.07 -21.22 16 9 N -0.59 -16.66 2.47 -830.79 -2.05 -18.72 16 10 C 0.11 3.06 5.38 86.38 0.46 3.53 16 11 C 0.15 5.50 6.58 86.38 0.57 6.07 16 12 N -0.75 -33.40 5.41 -343.44 -1.86 -35.25 16 13 C -0.24 -13.24 10.47 84.03 0.88 -12.36 16 14 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 15 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 16 N -0.98 -61.87 13.97 21.65 0.30 -61.56 16 17 Si 0.96 43.09 27.73 68.60 1.90 44.99 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 21 C 0.13 3.10 5.43 86.38 0.47 3.57 16 22 C -0.09 -2.44 5.67 29.85 0.17 -2.27 16 23 C -0.09 -2.10 5.13 -19.86 -0.10 -2.20 16 24 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 25 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 26 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 27 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 28 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 2.37 6.89 -2.39 -0.02 2.36 16 39 H 0.11 2.62 7.89 -2.38 -0.02 2.60 16 40 H 0.03 1.25 6.26 -2.39 -0.01 1.24 16 41 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.37 15.17 5.53 -92.71 -0.51 14.66 16 43 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.08 2.15 7.42 -2.39 -0.02 2.13 16 45 H 0.11 2.10 7.89 -2.38 -0.02 2.08 16 46 H 0.07 2.06 6.20 -2.38 -0.01 2.05 16 47 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 48 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 49 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 50 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 51 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 52 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.23 432.19 5.70 -67.53 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.32 Total: 35.08 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 7.15 Total: -10.85 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.61 Total: -115.53 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.90 Total: 44.99 kcal Total: -73.23 5.70 -67.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162806671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.284 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds