Wall clock time and date at job start Wed Apr 1 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47192 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 168.21193 * 3 2 1 5 5 C 1.52997 * 109.47253 * 112.19026 * 4 3 2 6 6 C 1.53001 * 109.47357 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47310 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00146 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00152 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99805 * 0.02562 * 9 7 6 11 11 C 1.52992 * 109.46780 * 269.99277 * 10 9 7 12 12 N 1.46503 * 109.46780 * 180.02562 * 11 10 9 13 13 C 1.36943 * 119.99874 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00082 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99756 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47638 * 89.99714 * 17 15 13 19 19 H 1.48505 * 109.46879 * 209.99460 * 17 15 13 20 20 H 1.48505 * 109.47521 * 329.99466 * 17 15 13 21 21 C 1.46496 * 119.99885 * 180.02562 * 9 7 6 22 22 C 1.52995 * 109.47070 * 90.00634 * 21 9 7 23 23 C 1.50707 * 109.47301 * 179.97438 * 22 21 9 24 24 C 1.38238 * 119.99792 * 90.00016 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97953 * 23 22 21 29 29 H 1.09002 * 109.47638 * 259.59801 * 1 2 3 30 30 H 1.09004 * 109.47619 * 19.60341 * 1 2 3 31 31 H 1.09005 * 109.46982 * 139.60176 * 1 2 3 32 32 H 1.09004 * 109.47689 * 352.18507 * 4 3 2 33 33 H 1.09005 * 109.47046 * 232.18589 * 4 3 2 34 34 H 1.08999 * 109.47279 * 59.99659 * 5 4 3 35 35 H 1.09005 * 109.46738 * 299.99752 * 5 4 3 36 36 H 1.08999 * 109.47056 * 59.99704 * 6 5 4 37 37 H 1.09001 * 109.46706 * 299.99516 * 6 5 4 38 38 H 1.09003 * 109.47109 * 29.99830 * 10 9 7 39 39 H 1.09008 * 109.46723 * 149.99386 * 10 9 7 40 40 H 1.09003 * 109.47751 * 300.00159 * 11 10 9 41 41 H 1.09004 * 109.46964 * 60.00681 * 11 10 9 42 42 H 0.97001 * 120.00420 * 0.02562 * 12 11 10 43 43 H 0.96998 * 119.99836 * 180.02562 * 16 15 13 44 44 H 1.08995 * 109.47623 * 330.00403 * 21 9 7 45 45 H 1.09004 * 109.47046 * 210.00410 * 21 9 7 46 46 H 1.09005 * 109.47610 * 60.00011 * 22 21 9 47 47 H 1.09000 * 109.47256 * 299.99352 * 22 21 9 48 48 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 51 51 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 52 52 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 -0.0001 5 6 4.6274 0.5471 -1.3358 6 6 6.1574 0.5490 -1.3357 7 6 6.6591 1.0855 -2.6516 8 8 5.8706 1.4326 -3.5052 9 7 7.9841 1.1805 -2.8794 10 6 8.9365 0.7618 -1.8480 11 6 9.2659 1.9519 -0.9447 12 7 10.2189 1.5333 0.0863 13 6 10.6628 2.4361 1.0154 14 1 10.3101 3.4565 0.9884 15 6 11.5653 2.0393 1.9927 16 7 11.9924 2.9071 2.8854 17 14 12.1748 0.2742 2.0398 18 1 13.4000 0.1511 1.2099 19 1 12.4864 -0.1046 3.4416 20 1 11.1225 -0.6274 1.5057 21 6 8.4718 1.7026 -4.1583 22 6 8.6395 3.2201 -4.0591 23 6 9.1418 3.7571 -5.3746 24 6 8.2434 4.1523 -6.3481 25 6 8.7042 4.6454 -7.5545 26 6 10.0632 4.7438 -7.7873 27 6 10.9616 4.3436 -6.8159 28 6 10.5008 3.8549 -5.6076 29 1 -0.3634 -0.1855 1.0108 30 1 -0.3634 0.9681 -0.3448 31 1 -0.3633 -0.7827 -0.6661 32 1 4.4823 -1.0160 0.1396 33 1 4.4808 0.6322 0.8117 34 1 4.2631 1.5648 -1.4755 35 1 4.2645 -0.0833 -2.1477 36 1 6.5220 -0.4686 -1.1959 37 1 6.5198 1.1797 -0.5239 38 1 8.4973 -0.0372 -1.2506 39 1 9.8498 0.4013 -2.3216 40 1 9.7052 2.7509 -1.5421 41 1 8.3527 2.3123 -0.4711 42 1 10.5360 0.6169 0.1104 43 1 12.6233 2.6299 3.5680 44 1 7.7544 1.4670 -4.9443 45 1 9.4327 1.2455 -4.3946 46 1 9.3570 3.4558 -3.2731 47 1 7.6785 3.6772 -3.8229 48 1 7.1816 4.0759 -6.1661 49 1 8.0023 4.9538 -8.3153 50 1 10.4231 5.1294 -8.7297 51 1 12.0234 4.4164 -6.9993 52 1 11.2027 3.5468 -4.8468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162892038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:49 Heat of formation + Delta-G solvation = 30.198970 kcal Electronic energy + Delta-G solvation = -28652.683626 eV Core-core repulsion = 24811.028334 eV Total energy + Delta-G solvation = -3841.655292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.17163 -39.22295 -36.60377 -35.76649 -34.68902 -33.53133 -33.06665 -31.47313 -30.95189 -30.04657 -28.88139 -27.84342 -26.56792 -24.00000 -23.71416 -22.63031 -21.96959 -21.57168 -20.85432 -19.11069 -17.78096 -17.25979 -16.81815 -16.57075 -16.05683 -15.88976 -15.24565 -15.19325 -14.77570 -14.52856 -14.03926 -13.99434 -13.93916 -13.89777 -13.70406 -13.56205 -13.38821 -13.29185 -13.12441 -12.90605 -12.66992 -12.50801 -12.38365 -12.09097 -11.69851 -11.52155 -11.47212 -11.29547 -11.21356 -11.03843 -10.98292 -10.89802 -10.61905 -10.25289 -9.89706 -9.77527 -9.69974 -9.67416 -8.99438 -8.98816 -8.96220 -8.50535 -7.34704 -5.84144 -3.21812 1.26619 1.33006 2.58646 2.64021 2.67105 2.99835 3.30026 3.32780 3.40014 3.71722 4.11193 4.47962 4.51558 4.76124 4.77646 4.91526 4.92085 4.94394 5.02331 5.06311 5.15252 5.20919 5.25917 5.28583 5.38313 5.41479 5.43952 5.45648 5.46265 5.47805 5.51966 5.54265 5.54987 5.59294 5.64884 5.72017 5.77805 5.85293 5.89826 6.02317 6.06195 6.12237 6.20409 6.34466 6.40986 6.43310 6.53878 6.63613 6.66363 6.94145 7.38956 7.57529 7.90142 8.20438 8.33614 9.11502 9.83188 10.01139 11.33929 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.004483 B = 0.003764 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 6244.505143 B = 7437.224553 C =13025.479153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.205 4.205 3 C -0.177 4.177 4 C -0.010 4.010 5 C -0.096 4.096 6 C -0.146 4.146 7 C 0.519 3.481 8 O -0.545 6.545 9 N -0.608 5.608 10 C 0.094 3.906 11 C 0.141 3.859 12 N -0.753 5.753 13 C -0.247 4.247 14 H 0.090 0.910 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.125 3.875 22 C -0.102 4.102 23 C -0.075 4.075 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.114 4.114 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.122 0.878 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -4.369 -16.374 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.205 4.205 3 C -0.178 4.178 4 C -0.047 4.047 5 C -0.134 4.134 6 C -0.185 4.185 7 C 0.308 3.692 8 O -0.423 6.423 9 N -0.340 5.340 10 C -0.029 4.029 11 C 0.012 3.988 12 N -0.400 5.400 13 C -0.377 4.377 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.579 5.579 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.002 3.998 22 C -0.140 4.140 23 C -0.076 4.076 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.132 4.132 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.194 0.806 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.110 -3.982 -16.696 21.599 hybrid contribution 0.749 -1.110 0.267 1.365 sum -12.361 -5.092 -16.430 21.182 Atomic orbital electron populations 1.18812 0.84849 1.02887 1.02784 1.22380 0.93953 1.02292 1.01889 1.22381 0.93666 1.00789 1.00915 1.18747 0.84330 1.02683 0.98923 1.21257 0.93059 1.02815 0.96232 1.21790 0.97055 1.03474 0.96205 1.20681 0.81662 0.77637 0.89241 1.90671 1.54865 1.49749 1.47001 1.47941 1.05886 1.63836 1.16384 1.21952 0.92917 0.98240 0.89815 1.21070 0.93356 0.94537 0.89800 1.42576 1.52972 1.10336 1.34094 1.19005 1.20659 0.93208 1.04815 0.89211 1.24684 0.99405 0.97300 0.97548 1.69700 1.35944 1.33538 1.18721 0.86551 0.78869 0.85929 0.77129 1.21041 1.21671 1.20269 1.21405 1.00074 0.92743 0.85539 1.21103 1.02634 0.95813 0.94468 1.19842 0.93419 0.98559 0.95737 1.21129 0.99688 0.98994 0.93449 1.21129 0.95650 0.99954 0.97223 1.21126 0.93466 1.00748 0.99268 1.21153 0.99624 0.99168 0.93835 1.21164 0.95125 0.99551 0.97396 0.90398 0.90335 0.90440 0.89511 0.89141 0.90855 0.91082 0.88654 0.87756 0.90009 0.90081 0.94873 0.95277 0.80635 0.92938 0.89917 0.90466 0.89753 0.90516 0.86011 0.86299 0.86397 0.86151 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.28 10.32 34.37 0.35 0.07 16 2 C -0.21 -2.39 14.13 -37.13 -0.52 -2.91 16 3 C -0.18 -2.18 13.34 -37.12 -0.50 -2.67 16 4 C -0.01 -0.11 5.70 -29.52 -0.17 -0.28 16 5 C -0.10 -1.08 4.46 -26.73 -0.12 -1.20 16 6 C -0.15 -1.63 4.25 -27.88 -0.12 -1.75 16 7 C 0.52 7.07 7.67 -10.99 -0.08 6.99 16 8 O -0.55 -8.93 15.56 5.55 0.09 -8.84 16 9 N -0.61 -7.72 2.47 -173.69 -0.43 -8.15 16 10 C 0.09 1.22 5.37 -4.04 -0.02 1.20 16 11 C 0.14 2.41 6.58 -4.04 -0.03 2.39 16 12 N -0.75 -16.36 5.41 -59.91 -0.32 -16.69 16 13 C -0.25 -6.66 10.47 -15.05 -0.16 -6.82 16 14 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 17 Si 0.89 20.97 27.73 -169.99 -4.71 16.26 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 21 C 0.13 1.50 5.43 -4.05 -0.02 1.48 16 22 C -0.10 -1.26 5.67 -27.88 -0.16 -1.42 16 23 C -0.07 -0.89 5.13 -104.62 -0.54 -1.43 16 24 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 28 C -0.11 -1.30 9.70 -39.58 -0.38 -1.69 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.10 0.90 7.40 -51.93 -0.38 0.51 16 37 H 0.10 1.19 7.18 -51.93 -0.37 0.82 16 38 H 0.08 0.96 6.44 -51.93 -0.33 0.63 16 39 H 0.08 0.98 7.89 -51.92 -0.41 0.57 16 40 H 0.03 0.60 6.26 -51.93 -0.33 0.27 16 41 H 0.03 0.52 7.22 -51.93 -0.37 0.15 16 42 H 0.36 7.51 5.53 -40.82 -0.23 7.28 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 45 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 46 H 0.08 1.12 6.20 -51.93 -0.32 0.80 16 47 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 48 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 52 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 430.58 15.07 6.49 6.49 Total: -1.00 -33.36 430.58 -10.88 -44.23 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.63 Total: 8.95 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -4.14 Total: -14.54 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.02 Total: -52.55 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -33.36 -10.88 -44.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162892038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.434 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds