Wall clock time and date at job start Wed Apr 1 2020 01:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47192 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 168.21193 * 3 2 1 5 5 C 1.52997 * 109.47253 * 112.19026 * 4 3 2 6 6 C 1.53001 * 109.47357 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47310 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00146 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00152 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99805 * 0.02562 * 9 7 6 11 11 C 1.52992 * 109.46780 * 269.99277 * 10 9 7 12 12 N 1.46503 * 109.46780 * 180.02562 * 11 10 9 13 13 C 1.36943 * 119.99874 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00082 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99756 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47638 * 89.99714 * 17 15 13 19 19 H 1.48505 * 109.46879 * 209.99460 * 17 15 13 20 20 H 1.48505 * 109.47521 * 329.99466 * 17 15 13 21 21 C 1.46496 * 119.99885 * 180.02562 * 9 7 6 22 22 C 1.52995 * 109.47070 * 90.00634 * 21 9 7 23 23 C 1.50707 * 109.47301 * 179.97438 * 22 21 9 24 24 C 1.38238 * 119.99792 * 90.00016 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97953 * 23 22 21 29 29 H 1.09002 * 109.47638 * 259.59801 * 1 2 3 30 30 H 1.09004 * 109.47619 * 19.60341 * 1 2 3 31 31 H 1.09005 * 109.46982 * 139.60176 * 1 2 3 32 32 H 1.09004 * 109.47689 * 352.18507 * 4 3 2 33 33 H 1.09005 * 109.47046 * 232.18589 * 4 3 2 34 34 H 1.08999 * 109.47279 * 59.99659 * 5 4 3 35 35 H 1.09005 * 109.46738 * 299.99752 * 5 4 3 36 36 H 1.08999 * 109.47056 * 59.99704 * 6 5 4 37 37 H 1.09001 * 109.46706 * 299.99516 * 6 5 4 38 38 H 1.09003 * 109.47109 * 29.99830 * 10 9 7 39 39 H 1.09008 * 109.46723 * 149.99386 * 10 9 7 40 40 H 1.09003 * 109.47751 * 300.00159 * 11 10 9 41 41 H 1.09004 * 109.46964 * 60.00681 * 11 10 9 42 42 H 0.97001 * 120.00420 * 0.02562 * 12 11 10 43 43 H 0.96998 * 119.99836 * 180.02562 * 16 15 13 44 44 H 1.08995 * 109.47623 * 330.00403 * 21 9 7 45 45 H 1.09004 * 109.47046 * 210.00410 * 21 9 7 46 46 H 1.09005 * 109.47610 * 60.00011 * 22 21 9 47 47 H 1.09000 * 109.47256 * 299.99352 * 22 21 9 48 48 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 50 50 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 51 51 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 52 52 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 -0.0001 5 6 4.6274 0.5471 -1.3358 6 6 6.1574 0.5490 -1.3357 7 6 6.6591 1.0855 -2.6516 8 8 5.8706 1.4326 -3.5052 9 7 7.9841 1.1805 -2.8794 10 6 8.9365 0.7618 -1.8480 11 6 9.2659 1.9519 -0.9447 12 7 10.2189 1.5333 0.0863 13 6 10.6628 2.4361 1.0154 14 1 10.3101 3.4565 0.9884 15 6 11.5653 2.0393 1.9927 16 7 11.9924 2.9071 2.8854 17 14 12.1748 0.2742 2.0398 18 1 13.4000 0.1511 1.2099 19 1 12.4864 -0.1046 3.4416 20 1 11.1225 -0.6274 1.5057 21 6 8.4718 1.7026 -4.1583 22 6 8.6395 3.2201 -4.0591 23 6 9.1418 3.7571 -5.3746 24 6 8.2434 4.1523 -6.3481 25 6 8.7042 4.6454 -7.5545 26 6 10.0632 4.7438 -7.7873 27 6 10.9616 4.3436 -6.8159 28 6 10.5008 3.8549 -5.6076 29 1 -0.3634 -0.1855 1.0108 30 1 -0.3634 0.9681 -0.3448 31 1 -0.3633 -0.7827 -0.6661 32 1 4.4823 -1.0160 0.1396 33 1 4.4808 0.6322 0.8117 34 1 4.2631 1.5648 -1.4755 35 1 4.2645 -0.0833 -2.1477 36 1 6.5220 -0.4686 -1.1959 37 1 6.5198 1.1797 -0.5239 38 1 8.4973 -0.0372 -1.2506 39 1 9.8498 0.4013 -2.3216 40 1 9.7052 2.7509 -1.5421 41 1 8.3527 2.3123 -0.4711 42 1 10.5360 0.6169 0.1104 43 1 12.6233 2.6299 3.5680 44 1 7.7544 1.4670 -4.9443 45 1 9.4327 1.2455 -4.3946 46 1 9.3570 3.4558 -3.2731 47 1 7.6785 3.6772 -3.8229 48 1 7.1816 4.0759 -6.1661 49 1 8.0023 4.9538 -8.3153 50 1 10.4231 5.1294 -8.7297 51 1 12.0234 4.4164 -6.9993 52 1 11.2027 3.5468 -4.8468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162892038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:47 Heat of formation + Delta-G solvation = 13.530252 kcal Electronic energy + Delta-G solvation = -28653.406436 eV Core-core repulsion = 24811.028334 eV Total energy + Delta-G solvation = -3842.378102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.24129 -40.08232 -37.82998 -36.74289 -36.17656 -34.56072 -34.00195 -33.34369 -31.76802 -30.89820 -30.06364 -29.03750 -27.40671 -25.39408 -24.92945 -23.45342 -23.25534 -22.77824 -21.79705 -20.33648 -19.53054 -18.33041 -17.69942 -17.49839 -17.07872 -16.89463 -16.43901 -16.12709 -16.07805 -15.83802 -15.38700 -15.21947 -14.95578 -14.75597 -14.66885 -14.50982 -14.36885 -14.20048 -14.14320 -14.02259 -13.84697 -13.46419 -13.32647 -13.17981 -13.07083 -12.96977 -12.67713 -12.55832 -12.42421 -12.09255 -12.03058 -11.94510 -11.86077 -11.78837 -11.67105 -10.96530 -10.85718 -10.64401 -10.58653 -9.96853 -9.82267 -9.48143 -9.29196 -7.99541 -5.35108 0.42729 0.49899 1.43006 1.48017 1.55126 1.58008 1.70357 1.77341 1.96970 2.52988 2.88022 3.30810 3.32422 3.46243 3.78928 3.87051 3.94437 4.01891 4.05600 4.08489 4.13688 4.18538 4.21109 4.30657 4.36488 4.42759 4.47424 4.56245 4.60973 4.65067 4.65752 4.68236 4.74971 4.80952 4.83271 4.86094 4.89055 4.89534 5.08337 5.11852 5.15169 5.18037 5.18372 5.26884 5.29003 5.51480 5.59852 5.62681 5.73409 5.78059 6.12822 6.22225 6.33026 6.72216 7.10245 7.13343 7.83083 8.04860 9.21939 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.004483 B = 0.003764 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 6244.505143 B = 7437.224553 C =13025.479153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.215 4.215 3 C -0.216 4.216 4 C -0.006 4.006 5 C -0.086 4.086 6 C -0.141 4.141 7 C 0.514 3.486 8 O -0.577 6.577 9 N -0.604 5.604 10 C 0.105 3.895 11 C 0.140 3.860 12 N -0.751 5.751 13 C -0.235 4.235 14 H 0.050 0.950 15 C -0.064 4.064 16 N -0.987 5.987 17 Si 0.958 3.042 18 H -0.279 1.279 19 H -0.301 1.301 20 H -0.237 1.237 21 C 0.127 3.873 22 C -0.091 4.091 23 C -0.089 4.089 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.128 4.128 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.371 0.629 43 H 0.258 0.742 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.119 0.881 49 H 0.140 0.860 50 H 0.144 0.856 51 H 0.140 0.860 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.722 -6.792 -17.896 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.215 4.215 3 C -0.216 4.216 4 C -0.043 4.043 5 C -0.124 4.124 6 C -0.180 4.180 7 C 0.304 3.696 8 O -0.457 6.457 9 N -0.335 5.335 10 C -0.018 4.018 11 C 0.013 3.987 12 N -0.398 5.398 13 C -0.366 4.366 14 H 0.068 0.932 15 C -0.256 4.256 16 N -0.637 5.637 17 Si 0.784 3.216 18 H -0.205 1.205 19 H -0.228 1.228 20 H -0.161 1.161 21 C 0.005 3.995 22 C -0.130 4.130 23 C -0.090 4.090 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.146 4.146 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.205 0.795 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.137 0.863 49 H 0.158 0.842 50 H 0.162 0.838 51 H 0.158 0.842 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.143 -6.424 -18.269 23.404 hybrid contribution 0.665 -0.189 0.663 0.958 sum -12.478 -6.613 -17.606 22.570 Atomic orbital electron populations 1.19062 0.82464 1.04048 1.04219 1.23416 0.95417 1.01637 1.01049 1.22999 0.94770 1.01784 1.02023 1.18772 0.83595 1.03747 0.98166 1.21121 0.93229 1.01389 0.96683 1.21810 0.96754 1.04865 0.94554 1.21148 0.81647 0.77069 0.89688 1.90660 1.55638 1.51139 1.48268 1.47952 1.05685 1.63431 1.16429 1.21851 0.93987 0.96544 0.89417 1.21172 0.91849 0.96396 0.89277 1.42450 1.53523 1.09905 1.33883 1.18931 1.19700 0.92520 1.05451 0.93213 1.25582 1.00166 1.02493 0.97343 1.69906 1.37353 1.36372 1.20059 0.85373 0.79202 0.80336 0.76649 1.20481 1.22803 1.16104 1.21441 1.00647 0.92377 0.85081 1.20941 1.01118 0.96238 0.94676 1.19840 0.93978 0.99586 0.95585 1.21233 0.99590 0.99751 0.94184 1.21424 0.96536 0.99227 0.97077 1.21479 0.93173 0.99871 1.00137 1.21449 1.00912 0.98486 0.93386 1.21278 0.94851 1.00258 0.98208 0.88817 0.89277 0.88928 0.87614 0.88793 0.93028 0.91896 0.85809 0.87774 0.87681 0.88178 0.95801 0.95952 0.79511 0.93356 0.90661 0.88656 0.91008 0.92453 0.86321 0.84212 0.83776 0.84195 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.57 10.32 70.17 0.72 0.15 16 2 C -0.22 -4.89 14.13 31.12 0.44 -4.45 16 3 C -0.22 -5.24 13.34 31.13 0.42 -4.83 16 4 C -0.01 -0.13 5.70 28.79 0.16 0.04 16 5 C -0.09 -1.92 4.46 30.59 0.14 -1.79 16 6 C -0.14 -2.94 4.25 29.85 0.13 -2.81 16 7 C 0.51 13.63 7.67 87.66 0.67 14.30 16 8 O -0.58 -19.10 15.56 -3.04 -0.05 -19.14 16 9 N -0.60 -14.51 2.47 -821.83 -2.03 -16.54 16 10 C 0.11 2.44 5.37 86.38 0.46 2.91 16 11 C 0.14 4.66 6.58 86.38 0.57 5.23 16 12 N -0.75 -31.36 5.41 -343.44 -1.86 -33.22 16 13 C -0.23 -12.78 10.47 84.03 0.88 -11.90 16 14 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 15 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 16 N -0.99 -61.93 13.97 21.65 0.30 -61.63 16 17 Si 0.96 42.32 27.73 68.60 1.90 44.23 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 20 H -0.24 -8.86 6.52 99.48 0.65 -8.21 16 21 C 0.13 2.96 5.43 86.38 0.47 3.43 16 22 C -0.09 -2.32 5.67 29.85 0.17 -2.15 16 23 C -0.09 -2.14 5.13 -19.86 -0.10 -2.24 16 24 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 25 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 27 C -0.12 -2.37 10.05 22.27 0.22 -2.14 16 28 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 36 H 0.12 1.90 7.40 -2.39 -0.02 1.88 16 37 H 0.10 2.23 7.18 -2.39 -0.02 2.22 16 38 H 0.11 2.02 6.44 -2.39 -0.02 2.01 16 39 H 0.10 2.04 7.89 -2.38 -0.02 2.02 16 40 H 0.02 0.86 6.26 -2.39 -0.01 0.84 16 41 H 0.02 0.79 7.22 -2.39 -0.02 0.77 16 42 H 0.37 14.11 5.53 -92.71 -0.51 13.59 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.07 1.90 7.42 -2.39 -0.02 1.88 16 45 H 0.10 1.88 7.89 -2.38 -0.02 1.86 16 46 H 0.07 1.97 6.20 -2.38 -0.01 1.96 16 47 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 48 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 49 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 50 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 51 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 52 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -74.78 430.58 5.30 -69.48 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.33 Total: 35.77 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 6.70 Total: -18.95 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.59 Total: -111.39 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.90 Total: 44.23 kcal Total: -74.78 5.30 -69.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162892038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.010 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds