Wall clock time and date at job start Wed Apr 1 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.09001 * 109.47377 * 54.99288 * 3 2 1 5 5 C 1.52999 * 109.46979 * 294.99610 * 3 2 1 6 6 C 1.53000 * 109.47242 * 174.99546 * 3 2 1 7 7 N 1.46905 * 109.47062 * 184.99654 * 6 3 2 8 8 C 1.46899 * 110.99928 * 179.97438 * 7 6 3 9 9 C 1.52998 * 109.47324 * 179.97438 * 8 7 6 10 10 C 1.53004 * 110.30267 * 57.82680 * 9 8 7 11 11 C 1.54385 * 110.34457 * 295.54151 * 9 8 7 12 12 N 1.48144 * 104.61907 * 264.99442 * 11 9 8 13 13 C 1.34775 * 127.83969 * 140.41308 * 12 11 9 14 14 O 1.21275 * 120.00151 * 0.02844 * 13 12 11 15 15 C 1.50702 * 119.99866 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47050 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00029 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99697 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00002 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99773 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99697 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47568 * 60.00512 * 21 19 17 23 23 H 1.48504 * 109.47099 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47368 * 300.00005 * 21 19 17 25 25 C 1.48151 * 104.32233 * 320.41113 * 12 11 9 26 26 C 1.54277 * 110.34542 * 179.97438 * 9 8 7 27 27 H 1.08996 * 110.34449 * 0.02562 * 26 9 8 28 28 C 1.53001 * 110.34653 * 237.74528 * 26 9 8 29 29 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47369 * 300.00447 * 1 2 3 31 31 H 1.08999 * 109.46658 * 60.00341 * 1 2 3 32 32 H 1.08999 * 109.47879 * 239.99549 * 2 1 3 33 33 H 1.09004 * 109.47023 * 119.99395 * 2 1 3 34 34 H 1.09005 * 109.47185 * 299.99750 * 5 3 2 35 35 H 1.09004 * 109.47553 * 59.99966 * 5 3 2 36 36 H 1.09002 * 109.47090 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47302 * 65.00041 * 6 3 2 38 38 H 1.08993 * 109.47396 * 304.99719 * 6 3 2 39 39 H 1.00896 * 111.00137 * 56.04889 * 7 6 3 40 40 H 1.09005 * 109.46666 * 59.99924 * 8 7 6 41 41 H 1.08999 * 109.47377 * 300.00497 * 8 7 6 42 42 H 1.09002 * 109.47188 * 182.17718 * 10 9 8 43 43 H 1.09001 * 109.47097 * 302.17427 * 10 9 8 44 44 H 1.09000 * 109.46954 * 62.17361 * 10 9 8 45 45 H 1.09004 * 110.40869 * 23.77771 * 11 9 8 46 46 H 1.09003 * 110.40926 * 146.20819 * 11 9 8 47 47 H 1.09006 * 109.46686 * 299.99517 * 15 13 12 48 48 H 1.08999 * 109.47428 * 59.99606 * 15 13 12 49 49 H 0.97002 * 119.99695 * 179.97438 * 20 19 17 50 50 H 1.08992 * 110.40889 * 280.80306 * 25 12 11 51 51 H 1.09000 * 110.40506 * 158.36626 * 25 12 11 52 52 H 1.09006 * 109.46640 * 303.00792 * 28 26 9 53 53 H 1.09001 * 109.47083 * 63.00447 * 28 26 9 54 54 H 1.09001 * 109.47528 * 183.01448 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 7 4.0446 2.8276 0.2462 8 6 5.5078 2.8685 0.3698 9 6 5.9689 4.3222 0.4920 10 6 5.3029 4.9910 1.6963 11 6 5.6455 5.0986 -0.8026 12 7 6.8918 5.0306 -1.6006 13 6 7.0130 4.8551 -2.9314 14 8 6.0220 4.7315 -3.6194 15 6 8.3799 4.8126 -3.5644 16 16 8.2106 4.5676 -5.3497 17 6 9.9088 4.5580 -5.8196 18 1 10.6770 4.6823 -5.0707 19 6 10.2593 4.3896 -7.1521 20 7 9.3230 4.2376 -8.0646 21 14 12.0595 4.3788 -7.6501 22 1 12.7596 3.2704 -6.9523 23 1 12.1658 4.1851 -9.1186 24 1 12.6846 5.6727 -7.2755 25 6 7.9748 5.1993 -0.6039 26 6 7.5046 4.3886 0.6238 27 1 7.9305 3.3855 0.6010 28 6 7.8971 5.1055 1.9172 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.0701 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3971 36 1 1.9983 3.1543 -1.3072 37 1 4.0031 0.9836 -0.7595 38 1 3.8570 0.8802 1.0114 39 1 3.6032 3.2972 1.0225 40 1 5.9597 2.4174 -0.5136 41 1 5.8131 2.3142 1.2573 42 1 5.6104 6.0354 1.7480 43 1 4.2195 4.9361 1.5892 44 1 5.6042 4.4778 2.6095 45 1 4.8251 4.6203 -1.3377 46 1 5.3975 6.1348 -0.5726 47 1 8.8976 5.7529 -3.3746 48 1 8.9528 3.9896 -3.1370 49 1 9.5679 4.1203 -8.9959 50 1 8.0906 6.2511 -0.3428 51 1 8.9118 4.7969 -0.9889 52 1 7.4525 6.1007 1.9302 53 1 7.5358 4.5349 2.7729 54 1 8.9824 5.1917 1.9700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180662111.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:36 Heat of formation + Delta-G solvation = -75.895942 kcal Electronic energy + Delta-G solvation = -28490.426734 eV Core-core repulsion = 24779.614773 eV Total energy + Delta-G solvation = -3710.811961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43511 -39.54027 -38.35537 -35.87223 -34.60635 -34.24256 -32.05153 -31.10439 -30.20285 -28.07839 -27.73818 -27.10116 -26.63094 -25.87586 -23.64303 -22.46670 -20.94509 -20.77022 -19.70741 -19.27367 -18.08159 -17.07203 -16.97036 -16.89966 -16.60491 -16.29364 -15.97979 -15.80213 -15.59381 -15.22176 -14.98092 -14.63681 -14.56703 -14.36628 -14.15920 -13.96237 -13.53073 -13.42210 -13.22027 -13.08739 -13.03446 -12.92243 -12.87557 -12.75703 -12.71118 -12.62755 -12.48405 -12.23774 -12.18771 -11.80035 -11.75476 -11.53725 -11.51291 -11.41702 -11.29137 -11.14408 -11.09833 -10.92449 -10.30530 -9.73556 -9.29274 -8.70210 -8.35783 -6.15115 1.22518 1.43027 1.43610 1.54126 1.58175 2.10634 2.26157 2.97946 3.10726 3.24585 3.53306 3.58695 3.77169 3.88293 3.91705 4.00422 4.15545 4.19241 4.21566 4.28443 4.33816 4.40635 4.42359 4.56223 4.61652 4.62555 4.64802 4.68347 4.72972 4.78461 4.81558 4.84701 4.88782 4.91291 4.94632 5.03576 5.10062 5.13107 5.18603 5.20297 5.28516 5.28908 5.33203 5.34480 5.39351 5.40648 5.51833 5.56094 5.66460 6.06144 6.17990 6.48676 6.56552 7.04612 7.14361 8.73442 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.002561 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.436466 B =10929.024311 C =12833.348729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.080 4.080 4 H 0.080 0.920 5 C -0.138 4.138 6 C 0.067 3.933 7 N -0.694 5.694 8 C 0.080 3.920 9 C -0.057 4.057 10 C -0.135 4.135 11 C 0.116 3.884 12 N -0.622 5.622 13 C 0.549 3.451 14 O -0.568 6.568 15 C -0.118 4.118 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.095 3.905 26 C -0.092 4.092 27 H 0.078 0.922 28 C -0.137 4.137 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.349 0.651 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.272 0.728 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.069 0.931 53 H 0.073 0.927 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -2.425 29.182 30.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.099 4.099 4 H 0.098 0.902 5 C -0.195 4.195 6 C -0.062 4.062 7 N -0.327 5.327 8 C -0.049 4.049 9 C -0.059 4.059 10 C -0.192 4.192 11 C -0.006 4.006 12 N -0.356 5.356 13 C 0.338 3.662 14 O -0.447 6.447 15 C -0.269 4.269 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.027 4.027 26 C -0.112 4.112 27 H 0.097 0.903 28 C -0.194 4.194 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.170 0.830 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.081 0.919 50 H 0.109 0.891 51 H 0.098 0.902 52 H 0.088 0.912 53 H 0.092 0.908 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.794 -2.535 27.205 29.378 hybrid contribution 2.072 -0.367 0.390 2.141 sum -8.722 -2.902 27.595 29.086 Atomic orbital electron populations 1.21793 0.95091 1.01898 1.02063 1.21540 0.96620 0.95671 1.01856 1.21096 0.93794 0.96463 0.98523 0.90172 1.21735 1.00602 1.00587 0.96583 1.21954 0.95436 0.89071 0.99756 1.60355 1.05568 1.16442 1.50330 1.21850 0.88169 0.95514 0.99353 1.21468 0.95210 0.94392 0.94804 1.21933 1.00316 1.01243 0.95744 1.22498 0.86960 1.00189 0.90933 1.48917 1.10730 1.71362 1.04621 1.19698 0.90058 0.75444 0.81019 1.90686 1.40674 1.51154 1.62188 1.23281 0.97391 1.05999 1.00221 1.85609 1.12389 1.95234 0.99145 1.23151 0.91684 1.57968 0.96633 0.89952 1.26168 1.04192 0.93657 0.95203 1.70184 1.35492 1.46914 1.02194 0.84980 0.76081 0.79534 0.77248 1.18585 1.20286 1.18531 1.22831 0.90510 1.01626 0.87724 1.22159 0.93908 1.00006 0.95096 0.90343 1.21878 1.01783 1.00803 0.94914 0.92361 0.92072 0.92907 0.92982 0.91309 0.94945 0.92259 0.92957 0.93499 0.94283 0.82977 0.94299 0.93502 0.90836 0.91998 0.90351 0.91464 0.90613 0.87731 0.87945 0.91937 0.89098 0.90181 0.91160 0.90778 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 2 C -0.12 -1.72 5.40 30.60 0.17 -1.55 16 3 C -0.08 -1.28 2.53 -10.79 -0.03 -1.31 16 4 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 5 C -0.14 -2.83 8.84 71.98 0.64 -2.20 16 6 C 0.07 1.21 5.07 86.30 0.44 1.65 16 7 N -0.69 -12.61 5.25 -513.88 -2.70 -15.31 16 8 C 0.08 1.50 4.44 86.30 0.38 1.89 16 9 C -0.06 -0.93 0.82 -51.28 -0.04 -0.98 16 10 C -0.14 -1.33 6.95 71.98 0.50 -0.83 16 11 C 0.12 2.90 6.06 86.53 0.52 3.43 16 12 N -0.62 -18.70 3.32 -807.84 -2.68 -21.38 16 13 C 0.55 22.91 7.93 87.66 0.70 23.60 16 14 O -0.57 -29.23 16.13 -3.02 -0.05 -29.27 16 15 C -0.12 -5.09 5.13 71.24 0.37 -4.72 16 16 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 17 C -0.55 -32.07 9.50 67.96 0.65 -31.42 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -57.19 13.22 21.65 0.29 -56.90 16 21 Si 1.00 44.26 29.55 68.60 2.03 46.29 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 C 0.10 1.93 6.47 86.56 0.56 2.49 16 26 C -0.09 -1.36 3.31 -9.87 -0.03 -1.40 16 27 H 0.08 1.24 7.71 -2.39 -0.02 1.22 16 28 C -0.14 -1.21 7.93 71.98 0.57 -0.63 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.74 6.56 -2.39 -0.02 0.72 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.06 1.07 6.57 -2.38 -0.02 1.05 16 36 H 0.05 1.22 7.75 -2.39 -0.02 1.21 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.35 4.82 6.73 -89.70 -0.60 4.21 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.64 6.68 -2.39 -0.02 0.62 16 43 H 0.06 0.61 6.51 -2.39 -0.02 0.59 16 44 H 0.08 0.53 6.88 -2.39 -0.02 0.52 16 45 H 0.07 2.14 7.11 -2.39 -0.02 2.12 16 46 H 0.08 1.69 7.84 -2.39 -0.02 1.67 16 47 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 48 H 0.10 4.06 7.95 -2.40 -0.02 4.04 16 49 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 50 H 0.09 1.53 7.86 -2.39 -0.02 1.51 16 51 H 0.08 1.64 7.30 -2.39 -0.02 1.63 16 52 H 0.07 0.55 6.61 -2.38 -0.02 0.53 16 53 H 0.07 0.49 6.98 -2.39 -0.02 0.47 16 54 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -78.39 425.77 2.52 -75.87 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.25 Total: 22.68 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 6.54 Total: -12.03 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -5.09 Total: -93.59 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -78.39 2.52 -75.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180662111.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.028 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds