Wall clock time and date at job start Wed Apr 1 2020 02:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 6 6 F 1.39897 * 109.47374 * 64.99983 * 4 2 1 7 7 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 8 8 O 1.21282 * 119.99823 * 314.99514 * 7 4 2 9 9 N 1.34772 * 120.00101 * 134.99798 * 7 4 2 10 10 C 1.48199 * 127.79787 * 0.02562 * 9 7 4 11 11 C 1.54523 * 104.63168 * 140.72145 * 10 9 7 12 12 H 1.08998 * 110.37505 * 264.96579 * 11 10 9 13 13 C 1.52994 * 110.37456 * 142.61273 * 11 10 9 14 14 N 1.46496 * 109.47243 * 66.45564 * 13 11 10 15 15 C 1.36939 * 119.99933 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00268 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99675 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99526 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00269 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47266 * 89.99591 * 19 17 15 21 21 H 1.48494 * 109.47214 * 209.99846 * 19 17 15 22 22 H 1.48505 * 109.46911 * 329.99526 * 19 17 15 23 23 C 1.53790 * 104.77811 * 23.78743 * 11 10 9 24 24 C 1.48256 * 127.80234 * 179.70715 * 9 7 4 25 25 C 1.52587 * 110.26467 * 240.94740 * 23 11 10 26 26 C 1.53201 * 109.20072 * 182.30775 * 25 23 11 27 27 O 1.42908 * 109.34382 * 56.67031 * 26 25 23 28 28 C 1.42916 * 114.21519 * 298.38426 * 27 26 25 29 29 C 1.52580 * 110.27508 * 118.78787 * 23 11 10 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 35 35 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 37 37 H 1.08995 * 110.40658 * 259.51280 * 10 9 7 38 38 H 1.09003 * 110.40336 * 21.93942 * 10 9 7 39 39 H 1.09010 * 109.46889 * 186.45778 * 13 11 10 40 40 H 1.08998 * 109.47484 * 306.45337 * 13 11 10 41 41 H 0.97003 * 120.00184 * 359.97438 * 14 13 11 42 42 H 0.97004 * 119.99518 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.42443 * 337.88018 * 24 9 7 44 44 H 1.09000 * 110.42891 * 100.36924 * 24 9 7 45 45 H 1.09002 * 109.51356 * 302.21844 * 25 23 11 46 46 H 1.08993 * 109.52155 * 62.38498 * 25 23 11 47 47 H 1.08999 * 109.48958 * 296.71033 * 26 25 23 48 48 H 1.09004 * 109.49464 * 176.63285 * 26 25 23 49 49 H 1.08996 * 109.50022 * 301.66050 * 28 27 26 50 50 H 1.09003 * 109.51332 * 181.58650 * 28 27 26 51 51 H 1.09004 * 109.51799 * 297.61292 * 29 23 11 52 52 H 1.09004 * 109.52129 * 57.77855 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 1 1.6055 -1.7197 -1.2953 6 9 1.6699 0.0014 -2.3887 7 6 3.5419 -0.8293 -1.1890 8 8 4.2064 0.1312 -0.8623 9 7 4.1467 -1.9934 -1.4982 10 6 3.5101 -3.2647 -1.9163 11 6 4.4414 -3.8248 -3.0147 12 1 4.0823 -3.5333 -4.0017 13 6 4.5340 -5.3482 -2.9087 14 7 3.2312 -5.9398 -3.2232 15 6 3.0715 -7.2995 -3.1935 16 1 3.9059 -7.9358 -2.9378 17 6 1.8369 -7.8599 -3.4911 18 7 1.6833 -9.1668 -3.4620 19 14 0.3936 -6.7594 -3.9327 20 1 0.3696 -6.5399 -5.4012 21 1 -0.8724 -7.4094 -3.5086 22 1 0.5362 -5.4540 -3.2393 23 6 5.8107 -3.1841 -2.7323 24 6 5.5994 -2.2894 -1.5031 25 6 6.2542 -2.3386 -3.9226 26 6 7.6440 -1.7596 -3.6395 27 8 8.5534 -2.8263 -3.3609 28 6 8.2119 -3.6024 -2.2105 29 6 6.8470 -4.2626 -2.4309 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 3.4548 -3.9564 -1.0758 38 1 2.5156 -3.0766 -2.3209 39 1 5.2801 -5.7168 -3.6129 40 1 4.8235 -5.6250 -1.8949 41 1 2.4817 -5.3683 -3.4526 42 1 0.8206 -9.5584 -3.6703 43 1 6.1749 -1.3688 -1.6004 44 1 5.8822 -2.8218 -0.5950 45 1 6.2943 -2.9611 -4.8166 46 1 5.5451 -1.5252 -4.0759 47 1 7.5916 -1.0923 -2.7792 48 1 7.9910 -1.2040 -4.5107 49 1 8.1654 -2.9545 -1.3352 50 1 8.9673 -4.3724 -2.0534 51 1 6.5560 -4.8062 -1.5320 52 1 6.9085 -4.9538 -3.2715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186455190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:42 Heat of formation + Delta-G solvation = -135.555104 kcal Electronic energy + Delta-G solvation = -32550.227259 eV Core-core repulsion = 28270.615107 eV Total energy + Delta-G solvation = -4279.612153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.05017 -42.12511 -40.29157 -38.59012 -36.62328 -36.22770 -34.75505 -33.60836 -32.19483 -31.19094 -29.88917 -28.09150 -27.33811 -27.20657 -25.50683 -24.88107 -23.52506 -22.28899 -21.68264 -20.49073 -20.04350 -19.24718 -18.79677 -17.90390 -17.31574 -17.15173 -16.94200 -16.65044 -16.55731 -16.40835 -15.91508 -15.71585 -15.40908 -15.34912 -14.84615 -14.79466 -14.75022 -14.29317 -14.08981 -13.98490 -13.81628 -13.75540 -13.24870 -13.20777 -13.15590 -13.06407 -12.94212 -12.84135 -12.54916 -12.46340 -12.19652 -12.16020 -12.02802 -11.94279 -11.91974 -11.77319 -11.72549 -11.26578 -11.14516 -10.87699 -10.63971 -10.38960 -9.94027 -9.25571 -7.99352 -5.32845 1.18796 1.38573 1.43670 1.50613 1.59158 2.51065 2.95447 2.99102 3.27550 3.30523 3.32996 3.42312 3.51427 3.56694 3.72574 3.82170 4.00867 4.04159 4.08146 4.14561 4.17230 4.19187 4.30204 4.37059 4.40992 4.50223 4.55088 4.58253 4.60099 4.70090 4.74762 4.75892 4.78218 4.81626 4.92630 4.94676 4.97342 4.99515 5.06408 5.08751 5.11882 5.16123 5.31103 5.36744 5.38609 5.44381 5.80415 6.23839 6.25961 6.28135 6.80605 7.11569 7.86795 8.05067 9.22155 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.004977 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.074163 B = 5624.294859 C = 8904.572155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.161 4.161 4 C 0.082 3.918 5 H 0.117 0.883 6 F -0.198 7.198 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.610 5.610 10 C 0.101 3.899 11 C -0.094 4.094 12 H 0.083 0.917 13 C 0.168 3.832 14 N -0.757 5.757 15 C -0.230 4.230 16 H 0.058 0.942 17 C -0.062 4.062 18 N -0.985 5.985 19 Si 0.948 3.052 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.242 1.242 23 C -0.056 4.056 24 C 0.112 3.888 25 C -0.136 4.136 26 C 0.061 3.939 27 O -0.399 6.399 28 C 0.058 3.942 29 C -0.143 4.143 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.365 0.635 42 H 0.256 0.744 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.104 0.896 49 H 0.061 0.939 50 H 0.106 0.894 51 H 0.090 0.910 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 20.430 6.591 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.218 4.218 4 C 0.043 3.957 5 H 0.134 0.866 6 F -0.179 7.179 7 C 0.300 3.700 8 O -0.424 6.424 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.113 4.113 12 H 0.101 0.899 13 C 0.042 3.958 14 N -0.403 5.403 15 C -0.361 4.361 16 H 0.076 0.924 17 C -0.254 4.254 18 N -0.636 5.636 19 Si 0.775 3.225 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.166 1.166 23 C -0.057 4.057 24 C -0.010 4.010 25 C -0.174 4.174 26 C -0.016 4.016 27 O -0.318 6.318 28 C -0.018 4.018 29 C -0.181 4.181 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.198 0.802 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.122 0.878 49 H 0.079 0.921 50 H 0.124 0.876 51 H 0.108 0.892 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.349 20.828 6.697 22.781 hybrid contribution -1.387 -0.093 -0.546 1.494 sum 4.961 20.736 6.150 22.190 Atomic orbital electron populations 1.21853 0.92306 1.03062 1.03190 1.21594 0.98082 0.97744 0.95243 1.22051 1.03221 0.94538 1.01960 1.21855 0.90823 0.97946 0.85121 0.86558 1.92839 1.91983 1.80389 1.52677 1.20862 0.90766 0.81258 0.77104 1.90614 1.66787 1.36708 1.48338 1.49145 1.09051 1.10596 1.65425 1.22731 0.97277 0.83990 0.98151 1.22221 0.94922 0.94910 0.99295 0.89854 1.20933 0.86615 0.89759 0.98445 1.42732 1.09529 1.02925 1.85143 1.19003 0.96074 0.83228 1.37752 0.92369 1.25468 1.00544 0.96678 1.02663 1.69884 1.24732 1.11205 1.57743 0.85520 0.79053 0.79634 0.78294 1.21037 1.22601 1.16561 1.20930 0.94370 0.95270 0.95159 1.22542 0.80674 0.99556 0.98242 1.22121 0.97794 0.99744 0.97764 1.22697 0.88486 0.88839 1.01545 1.87908 1.50239 1.45493 1.48172 1.22782 0.96362 0.94932 0.87763 1.22287 0.94551 0.97436 1.03842 0.90309 0.91451 0.92509 0.88524 0.91147 0.90992 0.93335 0.89171 0.89640 0.94994 0.94275 0.80183 0.93468 0.89862 0.89293 0.90913 0.91185 0.92660 0.87833 0.92071 0.87556 0.89204 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.11 71.98 0.66 -1.54 16 2 C -0.11 -1.96 2.75 -10.79 -0.03 -1.99 16 3 C -0.16 -3.25 8.71 71.98 0.63 -2.63 16 4 C 0.08 1.74 3.17 29.85 0.09 1.83 16 5 H 0.12 2.09 6.35 -2.39 -0.02 2.08 16 6 F -0.20 -4.99 16.03 44.97 0.72 -4.27 16 7 C 0.51 12.66 7.25 87.66 0.64 13.29 16 8 O -0.55 -16.10 14.07 -3.04 -0.04 -16.15 16 9 N -0.61 -13.60 3.33 -809.00 -2.69 -16.29 16 10 C 0.10 2.28 5.92 86.57 0.51 2.80 16 11 C -0.09 -2.29 2.78 -10.01 -0.03 -2.32 16 12 H 0.08 2.13 7.70 -2.39 -0.02 2.11 16 13 C 0.17 5.35 4.39 86.38 0.38 5.73 16 14 N -0.76 -31.49 5.24 -343.45 -1.80 -33.29 16 15 C -0.23 -12.25 10.47 84.03 0.88 -11.37 16 16 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 17 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 18 N -0.98 -61.25 13.97 21.65 0.30 -60.95 16 19 Si 0.95 42.80 27.74 68.60 1.90 44.70 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 22 H -0.24 -9.31 6.52 99.48 0.65 -8.66 16 23 C -0.06 -1.14 0.69 -52.02 -0.04 -1.18 16 24 C 0.11 2.24 5.10 86.21 0.44 2.68 16 25 C -0.14 -2.74 4.66 30.52 0.14 -2.60 16 26 C 0.06 1.13 6.64 72.05 0.48 1.61 16 27 O -0.40 -8.60 10.75 -148.98 -1.60 -10.20 16 28 C 0.06 1.02 6.65 72.05 0.48 1.50 16 29 C -0.14 -2.81 3.62 30.52 0.11 -2.70 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.92 7.94 -2.38 -0.02 0.90 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.79 5.25 -2.39 -0.01 1.78 16 36 H 0.05 1.04 7.69 -2.39 -0.02 1.02 16 37 H 0.09 2.07 7.80 -2.39 -0.02 2.05 16 38 H 0.09 1.86 6.72 -2.39 -0.02 1.84 16 39 H 0.03 1.08 6.62 -2.38 -0.02 1.06 16 40 H 0.04 1.23 6.88 -2.39 -0.02 1.21 16 41 H 0.37 14.36 5.38 -92.71 -0.50 13.86 16 42 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 43 H 0.08 1.75 5.89 -2.39 -0.01 1.73 16 44 H 0.09 1.59 7.77 -2.39 -0.02 1.57 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 0.98 6.51 -2.39 -0.02 0.96 16 48 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 49 H 0.06 0.92 7.55 -2.39 -0.02 0.90 16 50 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.09 1.67 6.88 -2.38 -0.02 1.65 16 52 H 0.07 1.70 6.60 -2.39 -0.02 1.68 16 Total: -1.00 -68.10 390.27 2.96 -65.13 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.37 Total: 31.22 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.81 Total: 0.09 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.19 Total: -110.53 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.64 Total: -26.35 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.72 Total: -4.27 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.90 Total: 44.70 kcal Total: -68.10 2.96 -65.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186455190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.423 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds