Wall clock time and date at job start Wed Apr 1 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47511 * 2 1 4 4 H 1.09003 * 109.46747 * 302.61586 * 3 2 1 5 5 C 1.50700 * 109.47288 * 182.61866 * 3 2 1 6 6 O 1.21286 * 119.99716 * 254.29403 * 5 3 2 7 7 N 1.34773 * 120.00022 * 74.29771 * 5 3 2 8 8 C 1.46503 * 119.99832 * 179.97438 * 7 5 3 9 9 H 1.09000 * 110.35020 * 35.68499 * 8 7 5 10 10 C 1.53991 * 110.30817 * 273.54832 * 8 7 5 11 11 N 1.47904 * 107.22626 * 242.20774 * 10 8 7 12 12 C 1.46896 * 111.00350 * 214.25623 * 11 10 8 13 13 C 1.50700 * 109.47274 * 169.99695 * 12 11 10 14 14 O 1.21295 * 120.00076 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00426 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00578 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99766 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00317 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99983 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47280 * 59.99754 * 20 18 16 22 22 H 1.48496 * 109.47059 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46599 * 299.99950 * 20 18 16 24 24 C 1.48817 * 105.67541 * 334.90454 * 11 10 8 25 25 C 1.54590 * 110.30876 * 157.82786 * 8 7 5 26 26 H 1.08998 * 110.72791 * 22.34042 * 25 8 7 27 27 O 1.42900 * 110.72715 * 259.23147 * 25 8 7 28 28 N 1.46902 * 109.47076 * 62.61381 * 3 2 1 29 29 C 1.46893 * 110.99932 * 55.92877 * 28 3 2 30 30 C 1.46898 * 110.99739 * 179.88343 * 28 3 2 31 31 H 1.09010 * 109.47163 * 54.51349 * 1 2 3 32 32 H 1.09001 * 109.47158 * 174.50864 * 1 2 3 33 33 H 1.09001 * 109.47221 * 294.51250 * 1 2 3 34 34 H 1.08998 * 109.47289 * 239.99735 * 2 1 3 35 35 H 1.08997 * 109.46981 * 119.99865 * 2 1 3 36 36 H 0.96995 * 120.00491 * 0.02562 * 7 5 3 37 37 H 1.09002 * 109.92173 * 1.66007 * 10 8 7 38 38 H 1.09002 * 109.92330 * 122.75991 * 10 8 7 39 39 H 1.09000 * 109.47257 * 289.99573 * 12 11 10 40 40 H 1.09001 * 109.46860 * 50.00050 * 12 11 10 41 41 H 0.97000 * 119.99391 * 0.02562 * 15 13 12 42 42 H 0.96996 * 120.00364 * 179.97438 * 19 18 16 43 43 H 1.08994 * 110.52278 * 280.54238 * 24 11 10 44 44 H 1.09002 * 110.84011 * 157.55997 * 24 11 10 45 45 H 0.96699 * 114.00397 * 180.02562 * 27 25 8 46 46 H 1.09001 * 109.47027 * 67.26321 * 29 28 3 47 47 H 1.08998 * 109.47056 * 187.26282 * 29 28 3 48 48 H 1.09006 * 109.47045 * 307.26214 * 29 28 3 49 49 H 1.09004 * 109.47612 * 53.70256 * 30 28 3 50 50 H 1.08997 * 109.47180 * 173.69968 * 30 28 3 51 51 H 1.09004 * 109.47217 * 293.69824 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6389 1.9696 -0.8656 5 6 3.5456 1.4429 -0.0649 6 8 4.1951 1.7120 0.9234 7 7 4.1703 1.1444 -1.2212 8 6 5.6340 1.1454 -1.2844 9 1 6.0542 0.7820 -0.3466 10 6 6.1548 2.5619 -1.5900 11 7 6.8695 2.4963 -2.8832 12 6 8.0126 3.4187 -2.9004 13 6 8.8550 3.1520 -4.1212 14 8 8.5344 2.2796 -4.9006 15 7 9.9642 3.8835 -4.3476 16 6 10.7302 3.6412 -5.4584 17 1 10.4447 2.8644 -6.1524 18 6 11.8740 4.3950 -5.6916 19 7 12.2211 5.3405 -4.8475 20 14 12.9174 4.0653 -7.2055 21 1 12.0973 4.2709 -8.4263 22 1 14.0734 4.9972 -7.2224 23 1 13.4112 2.6652 -7.1709 24 6 7.3161 1.0838 -3.0246 25 6 6.1207 0.2729 -2.4641 26 1 5.3373 0.1670 -3.2145 27 8 6.5517 -1.0086 -2.0014 28 7 1.6026 2.1165 1.2298 29 6 2.0443 1.3781 2.4204 30 6 2.0776 3.5061 1.2658 31 1 -0.3634 0.5966 -0.8369 32 1 -0.3633 -1.0230 -0.0983 33 1 -0.3634 0.4264 0.9350 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 3.6510 0.9296 -2.0117 37 1 5.3186 3.2574 -1.6627 38 1 6.8381 2.8840 -0.8042 39 1 7.6500 4.4463 -2.9267 40 1 8.6142 3.2685 -2.0040 41 1 10.2204 4.5814 -3.7246 42 1 13.0197 5.8664 -5.0099 43 1 8.2134 0.9056 -2.4321 44 1 7.4922 0.8357 -4.0713 45 1 6.8672 -1.5945 -2.7030 46 1 3.1308 1.4242 2.4941 47 1 1.6005 1.8246 3.3102 48 1 1.7293 0.3377 2.3402 49 1 1.7720 4.0184 0.3535 50 1 1.6482 4.0146 2.1291 51 1 3.1649 3.5166 1.3417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194087171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:41 Heat of formation + Delta-G solvation = -120.866130 kcal Electronic energy + Delta-G solvation = -31054.499455 eV Core-core repulsion = 26795.444226 eV Total energy + Delta-G solvation = -4259.055229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76195 -40.79173 -39.56501 -37.73483 -36.95044 -36.02442 -35.51293 -33.83024 -33.33919 -31.55775 -29.49858 -28.72114 -28.32960 -27.65218 -25.98872 -24.18864 -23.14734 -22.67677 -21.65819 -21.17269 -20.85967 -19.89841 -18.76938 -18.30008 -17.83205 -17.60972 -16.82295 -16.69767 -16.40466 -16.31577 -16.13345 -15.87695 -15.66769 -15.45750 -15.33473 -14.83991 -14.54349 -14.37506 -14.02850 -13.90634 -13.84268 -13.55205 -13.47907 -13.19010 -13.09241 -13.03105 -12.87300 -12.77400 -12.62931 -12.59819 -12.44961 -12.41313 -12.14465 -11.87306 -11.80902 -11.60692 -11.48646 -11.33997 -11.08107 -10.34131 -10.13681 -10.03880 -9.49721 -9.16548 -8.48535 -5.97675 1.38520 1.41089 1.50254 1.52090 1.99059 2.02981 2.25953 2.60144 2.94529 3.06647 3.17690 3.25528 3.53430 3.63041 3.83621 3.89755 3.96164 4.08235 4.15420 4.23302 4.24262 4.30221 4.38962 4.45576 4.51410 4.57028 4.64168 4.65207 4.70197 4.71152 4.78821 4.81096 4.98075 5.03934 5.07293 5.11625 5.20351 5.28618 5.38921 5.44604 5.55595 5.67084 5.76255 5.89962 5.97681 6.00510 6.47405 6.56290 6.72940 7.09326 7.17612 7.51345 8.05602 8.68564 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.002073 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.857356 B =13505.033372 C =14124.281176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.068 3.932 4 H 0.127 0.873 5 C 0.487 3.513 6 O -0.571 6.571 7 N -0.703 5.703 8 C 0.151 3.849 9 H 0.081 0.919 10 C 0.034 3.966 11 N -0.496 5.496 12 C 0.045 3.955 13 C 0.441 3.559 14 O -0.610 6.610 15 N -0.571 5.571 16 C -0.332 4.332 17 H 0.083 0.917 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.271 1.271 24 C 0.013 3.987 25 C 0.108 3.892 26 H 0.098 0.902 27 O -0.571 6.571 28 N -0.511 5.511 29 C 0.002 3.998 30 C 0.012 3.988 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.416 0.584 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.031 0.969 44 H 0.098 0.902 45 H 0.401 0.599 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.218 -8.536 10.279 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C -0.044 4.044 4 H 0.144 0.856 5 C 0.273 3.727 6 O -0.450 6.450 7 N -0.356 5.356 8 C 0.044 3.956 9 H 0.099 0.901 10 C -0.095 4.095 11 N -0.222 5.222 12 C -0.086 4.086 13 C 0.228 3.772 14 O -0.496 6.496 15 N -0.208 5.208 16 C -0.461 4.461 17 H 0.101 0.899 18 C -0.215 4.215 19 N -0.562 5.562 20 Si 0.818 3.182 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.116 4.116 25 C 0.048 3.952 26 H 0.116 0.884 27 O -0.379 6.379 28 N -0.233 5.233 29 C -0.146 4.146 30 C -0.136 4.136 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.253 0.747 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.116 0.884 45 H 0.252 0.748 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -22.843 -8.366 10.630 26.548 hybrid contribution 2.690 0.113 -0.440 2.728 sum -20.153 -8.253 10.190 24.043 Atomic orbital electron populations 1.21595 0.93093 1.01859 1.02744 1.21608 0.98332 0.91969 1.03072 1.22185 0.86804 0.99055 0.96360 0.85585 1.22661 0.92671 0.75024 0.82317 1.90629 1.68763 1.49731 1.35896 1.46110 1.05741 1.70055 1.13645 1.21402 0.81602 0.93663 0.98937 0.90109 1.23318 0.99123 0.97226 0.89861 1.64626 1.22217 1.04636 1.30697 1.22034 0.91813 0.99511 0.95270 1.20519 0.82922 0.84431 0.89281 1.90412 1.72750 1.35943 1.50539 1.41926 1.22256 1.33139 1.23495 1.19644 1.05537 1.18724 1.02226 0.89868 1.26091 0.98351 0.95261 1.01765 1.69674 1.26838 1.21763 1.37904 0.84959 0.77386 0.78269 0.77564 1.19528 1.19725 1.19605 1.24009 0.96229 0.88320 1.03009 1.22836 0.95241 0.82974 0.94171 0.88391 1.86434 1.86149 1.25469 1.39879 1.62551 1.56643 1.02599 1.01457 1.22713 1.00225 0.99109 0.92528 1.22528 0.98646 0.89098 1.03306 0.91846 0.92065 0.92470 0.89750 0.92080 0.74667 0.88972 0.93262 0.87062 0.91799 0.77121 0.91296 0.95102 0.88421 0.74840 0.94006 0.91248 0.90710 0.90656 0.90603 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.71 71.98 0.70 -0.60 16 2 C -0.11 -1.30 5.03 30.59 0.15 -1.14 16 3 C 0.07 1.00 2.25 44.17 0.10 1.10 16 4 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 5 C 0.49 9.92 6.36 87.66 0.56 10.48 16 6 O -0.57 -16.06 11.54 -3.05 -0.04 -16.09 16 7 N -0.70 -12.78 5.03 -438.38 -2.20 -14.98 16 8 C 0.15 3.62 3.06 45.87 0.14 3.76 16 9 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 10 C 0.03 0.89 6.48 86.44 0.56 1.45 16 11 N -0.50 -15.78 5.27 -886.78 -4.67 -20.45 16 12 C 0.05 1.59 5.52 85.56 0.47 2.06 16 13 C 0.44 20.53 7.50 87.66 0.66 21.18 16 14 O -0.61 -31.66 13.12 -3.08 -0.04 -31.70 16 15 N -0.57 -29.04 5.29 -306.99 -1.62 -30.66 16 16 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 17 H 0.08 4.88 7.16 -2.91 -0.02 4.85 16 18 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 19 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 20 Si 0.99 42.35 29.55 68.60 2.03 44.37 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 C 0.01 0.41 5.03 86.60 0.44 0.84 16 25 C 0.11 2.53 4.15 31.80 0.13 2.66 16 26 H 0.10 1.88 7.74 -2.39 -0.02 1.86 16 27 O -0.57 -12.90 13.40 -148.98 -2.00 -14.90 16 28 N -0.51 -8.61 4.50 -927.73 -4.17 -12.78 16 29 C 0.00 0.04 8.89 127.69 1.14 1.17 16 30 C 0.01 0.22 9.15 127.69 1.17 1.39 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.67 7.84 -2.39 -0.02 0.65 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.86 6.04 -2.39 -0.01 0.85 16 36 H 0.42 5.18 8.35 -92.71 -0.77 4.41 16 37 H 0.09 2.29 7.92 -2.39 -0.02 2.27 16 38 H 0.05 1.36 7.57 -2.39 -0.02 1.34 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.51 16 40 H 0.06 2.11 7.81 -2.39 -0.02 2.09 16 41 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 42 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.03 1.08 8.02 -2.39 -0.02 1.06 16 44 H 0.10 3.66 6.01 -2.39 -0.01 3.65 16 45 H 0.40 5.97 9.12 -74.06 -0.68 5.30 16 46 H 0.04 1.01 5.45 -2.39 -0.01 1.00 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 48 H 0.07 1.21 5.78 -2.38 -0.01 1.19 16 49 H 0.07 1.12 8.12 -2.38 -0.02 1.10 16 50 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.02 0.58 6.05 -2.38 -0.01 0.56 16 Total: -1.00 -70.31 400.11 -6.14 -76.46 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -1.21 Total: 43.72 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 7.49 Total: 26.34 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -12.38 Total: -128.20 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -2.07 Total: -62.69 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -70.31 -6.14 -76.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194087171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.411 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds