Wall clock time and date at job start Wed Apr 1 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47218 * 2 1 4 4 N 1.46494 * 109.47393 * 120.00076 * 2 1 3 5 5 C 1.34768 * 120.00037 * 85.00097 * 4 2 1 6 6 O 1.21284 * 120.00285 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00381 * 179.97438 * 5 4 2 8 8 N 1.46903 * 109.47657 * 179.97438 * 7 5 4 9 9 C 1.46900 * 110.99695 * 293.95794 * 8 7 5 10 10 C 1.46895 * 110.99797 * 170.00191 * 8 7 5 11 11 C 1.50700 * 109.46650 * 190.00114 * 10 8 7 12 12 O 1.21287 * 120.00136 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99799 * 179.97438 * 11 10 8 14 14 C 1.46507 * 119.99536 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.88912 * 37.43416 * 14 13 11 16 16 C 1.54910 * 111.00577 * 273.54494 * 14 13 11 17 17 N 1.47424 * 104.82982 * 204.88095 * 16 14 13 18 18 C 1.36937 * 125.64591 * 204.08979 * 17 16 14 19 19 H 1.07997 * 120.00208 * 354.87875 * 18 17 16 20 20 C 1.38813 * 119.99793 * 174.87413 * 18 17 16 21 21 N 1.31616 * 120.00159 * 7.07449 * 20 18 17 22 22 Si 1.86806 * 119.99591 * 187.06666 * 20 18 17 23 23 H 1.48498 * 109.47072 * 94.99524 * 22 20 18 24 24 H 1.48511 * 109.46756 * 214.98714 * 22 20 18 25 25 H 1.48492 * 109.47457 * 334.99038 * 22 20 18 26 26 C 1.47023 * 108.70421 * 24.13280 * 17 16 14 27 27 C 1.54319 * 107.40260 * 358.85973 * 26 17 16 28 28 H 1.09000 * 110.71756 * 96.25014 * 27 26 17 29 29 O 1.42896 * 110.72110 * 219.52272 * 27 26 17 30 30 H 1.09003 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46894 * 299.99526 * 1 2 3 32 32 H 1.09000 * 109.47186 * 59.99707 * 1 2 3 33 33 H 1.09000 * 109.46894 * 240.00474 * 2 1 3 34 34 H 1.08996 * 109.47329 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46783 * 300.00408 * 3 2 1 36 36 H 1.09003 * 109.47134 * 59.99741 * 3 2 1 37 37 H 0.97002 * 119.99879 * 264.99970 * 4 2 1 38 38 H 1.09011 * 109.47053 * 59.99520 * 7 5 4 39 39 H 1.09002 * 109.47109 * 300.00159 * 7 5 4 40 40 H 1.09004 * 109.46933 * 296.04311 * 9 8 7 41 41 H 1.08993 * 109.47346 * 56.04325 * 9 8 7 42 42 H 1.09007 * 109.46785 * 176.04561 * 9 8 7 43 43 H 1.08998 * 109.47153 * 70.00205 * 10 8 7 44 44 H 1.09001 * 109.47317 * 309.99820 * 10 8 7 45 45 H 0.96992 * 120.00592 * 0.02562 * 13 11 10 46 46 H 1.08996 * 110.36192 * 86.04366 * 16 14 13 47 47 H 1.09002 * 110.46029 * 323.76526 * 16 14 13 48 48 H 0.96998 * 119.99800 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.88170 * 118.35905 * 26 17 16 50 50 H 1.08996 * 109.87898 * 239.36310 * 26 17 16 51 51 H 0.96706 * 114.00268 * 298.54849 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0321 1.1943 6 8 1.8591 -2.6677 0.2023 7 6 2.6501 -2.7425 2.4245 8 7 2.6989 -4.1885 2.1695 9 6 1.3489 -4.7350 1.9777 10 6 3.4022 -4.8903 3.2515 11 6 3.6488 -6.3204 2.8454 12 8 3.2750 -6.7161 1.7615 13 7 4.2847 -7.1598 3.6866 14 6 4.5240 -8.5502 3.2919 15 1 4.7664 -8.6170 2.2313 16 6 3.3075 -9.4436 3.6409 17 7 3.8643 -10.8016 3.7801 18 6 3.1669 -11.9698 3.6246 19 1 2.0998 -11.9440 3.4604 20 6 3.8317 -13.1872 3.6779 21 7 5.1033 -13.2285 4.0152 22 14 2.9215 -14.7670 3.2712 23 1 3.1418 -15.1117 1.8436 24 1 3.4301 -15.8665 4.1301 25 1 1.4691 -14.5787 3.5164 26 6 5.2919 -10.6938 4.1146 27 6 5.6437 -9.1919 4.1577 28 1 5.6036 -8.8156 5.1799 29 8 6.9300 -8.9572 3.5811 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.2491 -0.1823 1.9894 38 1 1.9779 -2.5436 3.2593 39 1 3.6494 -2.3824 2.6690 40 1 0.7765 -4.6209 2.8983 41 1 0.8505 -4.1974 1.1711 42 1 1.4180 -5.7922 1.7214 43 1 2.7926 -4.8691 4.1548 44 1 4.3553 -4.3980 3.4447 45 1 4.5833 -6.8435 4.5535 46 1 2.5730 -9.4155 2.8360 47 1 2.8545 -9.1214 4.5785 48 1 5.5676 -14.0793 4.0528 49 1 5.4797 -11.1467 5.0882 50 1 5.8899 -11.1930 3.3523 51 1 7.6545 -9.4029 4.0412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194424300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:42 Heat of formation + Delta-G solvation = -109.656865 kcal Electronic energy + Delta-G solvation = -30264.852445 eV Core-core repulsion = 26006.283286 eV Total energy + Delta-G solvation = -4258.569159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24613 -40.74014 -39.48552 -37.65783 -36.67264 -36.56255 -35.48704 -33.64994 -32.71293 -30.69229 -29.59003 -28.87793 -28.30212 -28.08630 -26.33232 -24.48602 -22.50358 -22.16762 -21.80610 -21.37065 -21.28938 -19.13305 -18.52481 -18.19607 -17.74668 -17.33077 -17.03429 -16.84290 -16.54075 -16.29244 -15.98197 -15.64688 -15.52714 -15.25139 -15.02419 -14.84509 -14.50356 -14.36053 -14.27588 -13.90177 -13.78995 -13.65965 -13.23530 -13.16714 -13.14803 -13.05953 -12.81767 -12.80625 -12.75788 -12.59236 -12.46824 -12.25044 -12.08607 -11.90546 -11.89385 -11.51698 -11.10081 -10.89924 -10.76817 -10.54888 -10.10380 -10.04626 -9.24356 -8.97604 -7.92095 -5.27360 1.43328 1.46785 1.54658 1.71741 1.73149 1.88354 2.28790 2.46650 3.07804 3.13285 3.28648 3.55603 3.73460 3.81669 3.94017 4.01903 4.08315 4.16138 4.20442 4.24310 4.34255 4.34349 4.40427 4.44213 4.47856 4.57324 4.61153 4.64710 4.74523 4.77458 4.82895 4.94528 5.02750 5.05161 5.21237 5.27941 5.33428 5.33940 5.45249 5.53102 5.63056 5.64855 5.90384 5.95492 6.12512 6.67354 6.69288 6.87519 7.03392 7.38929 7.41341 7.67845 8.30634 9.18182 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.001870 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.992195 B =14967.992017 C =15804.370723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.150 4.150 4 N -0.715 5.715 5 C 0.505 3.495 6 O -0.572 6.572 7 C 0.040 3.960 8 N -0.539 5.539 9 C 0.026 3.974 10 C 0.049 3.951 11 C 0.504 3.496 12 O -0.571 6.571 13 N -0.701 5.701 14 C 0.156 3.844 15 H 0.062 0.938 16 C 0.133 3.867 17 N -0.622 5.622 18 C -0.250 4.250 19 H 0.079 0.921 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.978 3.022 23 H -0.291 1.291 24 H -0.288 1.288 25 H -0.268 1.268 26 C 0.158 3.842 27 C 0.094 3.906 28 H 0.099 0.901 29 O -0.569 6.569 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.417 0.583 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.142 0.858 45 H 0.419 0.581 46 H 0.027 0.973 47 H 0.043 0.957 48 H 0.250 0.750 49 H 0.026 0.974 50 H 0.021 0.979 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 33.287 4.752 33.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.292 3.708 6 O -0.450 6.450 7 C -0.090 4.090 8 N -0.264 5.264 9 C -0.122 4.122 10 C -0.081 4.081 11 C 0.291 3.709 12 O -0.449 6.449 13 N -0.355 5.355 14 C 0.049 3.951 15 H 0.080 0.920 16 C 0.006 3.994 17 N -0.350 5.350 18 C -0.378 4.378 19 H 0.097 0.903 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.806 3.194 23 H -0.218 1.218 24 H -0.214 1.214 25 H -0.193 1.193 26 C 0.032 3.968 27 C 0.033 3.967 28 H 0.117 0.883 29 O -0.377 6.377 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.115 0.885 39 H 0.156 0.844 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.160 0.840 45 H 0.256 0.744 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.044 0.956 50 H 0.039 0.961 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.106 32.656 2.429 32.893 hybrid contribution -0.326 -1.570 1.065 1.925 sum -3.431 31.086 3.494 31.469 Atomic orbital electron populations 1.22139 0.95246 1.01042 1.03277 1.20946 0.94215 0.94105 0.88003 1.22007 1.01777 0.92886 1.04121 1.45980 1.67344 1.06140 1.17474 1.21090 0.76965 0.82815 0.89944 1.90721 1.50700 1.66799 1.36773 1.22115 1.05313 0.86957 0.94600 1.61087 1.19055 1.02629 1.43653 1.22455 0.88357 1.01024 1.00395 1.22045 1.03014 0.89550 0.93511 1.21381 0.76675 0.88915 0.83895 1.90723 1.51339 1.78580 1.24283 1.45641 1.59737 1.09217 1.20931 1.21677 0.93790 0.81126 0.98497 0.91984 1.21918 0.94759 0.84601 0.98132 1.44511 1.06906 1.00785 1.82809 1.19422 0.91981 0.83900 1.42545 0.90288 1.25648 0.97154 1.00754 1.01731 1.70120 1.10213 1.24910 1.54047 0.85077 0.78131 0.78971 0.77253 1.21778 1.21394 1.19305 1.21673 0.84977 0.91798 0.98308 1.23173 0.82964 0.94433 0.96081 0.88314 1.86427 1.16460 1.74974 1.59828 0.95102 0.90895 0.90757 0.92549 0.91777 0.90355 0.90238 0.74578 0.88475 0.84388 0.94315 0.91695 0.92818 0.88156 0.84025 0.74358 0.95456 0.93903 0.94065 0.95565 0.96085 0.75337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.48 71.98 0.68 -1.29 16 2 C 0.13 1.64 3.18 44.99 0.14 1.78 16 3 C -0.15 -0.83 9.38 71.98 0.68 -0.16 16 4 N -0.71 -7.90 5.08 -442.54 -2.25 -10.15 16 5 C 0.51 9.61 7.49 87.66 0.66 10.26 16 6 O -0.57 -17.83 14.00 -3.04 -0.04 -17.87 16 7 C 0.04 0.51 5.45 85.56 0.47 0.98 16 8 N -0.54 -12.23 4.24 -931.63 -3.95 -16.18 16 9 C 0.03 0.69 8.85 127.69 1.13 1.82 16 10 C 0.05 0.84 5.45 85.56 0.47 1.31 16 11 C 0.50 14.74 7.55 87.66 0.66 15.40 16 12 O -0.57 -23.81 14.05 -3.05 -0.04 -23.85 16 13 N -0.70 -18.90 5.23 -435.52 -2.28 -21.18 16 14 C 0.16 5.91 3.05 46.47 0.14 6.05 16 15 H 0.06 2.88 7.73 -2.39 -0.02 2.86 16 16 C 0.13 5.83 6.93 86.86 0.60 6.43 16 17 N -0.62 -32.99 3.39 -692.00 -2.35 -35.34 16 18 C -0.25 -14.50 10.27 84.03 0.86 -13.64 16 19 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 20 C -0.06 -3.43 5.48 84.86 0.46 -2.96 16 21 N -0.94 -56.52 10.36 21.65 0.22 -56.29 16 22 Si 0.98 46.74 29.56 68.60 2.03 48.77 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.16 7.67 5.15 86.73 0.45 8.11 16 27 C 0.09 3.31 3.97 31.87 0.13 3.44 16 28 H 0.10 2.76 8.00 -2.39 -0.02 2.74 16 29 O -0.57 -18.79 13.40 -148.98 -2.00 -20.79 16 30 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.08 7.58 -2.39 -0.02 1.06 16 34 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.42 1.30 8.60 -92.71 -0.80 0.50 16 38 H 0.10 0.63 8.12 -2.38 -0.02 0.61 16 39 H 0.14 0.83 7.93 -2.39 -0.02 0.81 16 40 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.06 1.99 5.83 -2.39 -0.01 1.98 16 42 H 0.05 1.87 5.88 -2.38 -0.01 1.86 16 43 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 44 H 0.14 1.39 7.93 -2.39 -0.02 1.37 16 45 H 0.42 7.41 8.52 -92.71 -0.79 6.62 16 46 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 49 H 0.03 1.36 7.61 -2.39 -0.02 1.34 16 50 H 0.02 1.17 7.20 -2.39 -0.02 1.16 16 51 H 0.40 9.73 9.11 -74.05 -0.67 9.06 16 Total: -1.00 -90.75 409.90 -4.43 -95.18 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -1.31 Total: 20.16 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 7.53 Total: 37.54 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -10.60 Total: -139.14 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -2.08 Total: -62.51 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -90.75 -4.43 -95.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194424300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.478 kcal (2) G-P(sol) polarization free energy of solvation -90.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds