Wall clock time and date at job start Wed Apr 1 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 H 1.08999 * 109.46859 * 305.96638 * 3 2 1 5 5 C 1.50703 * 109.47431 * 65.96622 * 3 2 1 6 6 O 1.21273 * 120.00047 * 99.99988 * 5 3 2 7 7 N 1.34773 * 119.99629 * 280.00374 * 5 3 2 8 8 C 1.46497 * 119.99785 * 180.02562 * 7 5 3 9 9 H 1.08998 * 110.63084 * 36.64549 * 8 7 5 10 10 C 1.54323 * 110.70702 * 273.54213 * 8 7 5 11 11 N 1.47439 * 107.23463 * 219.33467 * 10 8 7 12 12 C 1.46897 * 110.99812 * 236.74045 * 11 10 8 13 13 C 1.50700 * 109.47149 * 170.00116 * 12 11 10 14 14 O 1.21291 * 120.00110 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00280 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00450 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99595 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00536 * 180.02562 * 16 15 13 19 19 N 1.31419 * 119.99527 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47449 * 59.99870 * 20 18 16 22 22 H 1.48504 * 109.47085 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46994 * 299.99401 * 20 18 16 24 24 C 1.47839 * 108.56786 * 359.00905 * 11 10 8 25 25 C 1.54902 * 104.79836 * 24.09383 * 24 11 10 26 26 H 1.09007 * 110.98716 * 81.02528 * 25 24 11 27 27 O 1.42899 * 110.99452 * 204.83844 * 25 24 11 28 28 N 1.46898 * 109.46914 * 185.96588 * 3 2 1 29 29 C 1.46901 * 111.00450 * 312.49887 * 28 3 2 30 30 C 1.46901 * 110.99922 * 76.45709 * 28 3 2 31 31 H 1.08997 * 109.47102 * 294.66196 * 1 2 3 32 32 H 1.08996 * 109.46758 * 174.66167 * 1 2 3 33 33 H 1.08999 * 109.47191 * 54.66611 * 1 2 3 34 34 H 1.09008 * 109.47059 * 119.99557 * 2 1 3 35 35 H 1.08998 * 109.47637 * 239.99477 * 2 1 3 36 36 H 0.97000 * 120.00300 * 359.97438 * 7 5 3 37 37 H 1.09005 * 109.88450 * 338.73916 * 10 8 7 38 38 H 1.09002 * 109.88974 * 99.75926 * 10 8 7 39 39 H 1.09007 * 109.47152 * 290.00020 * 12 11 10 40 40 H 1.08995 * 109.47252 * 49.99891 * 12 11 10 41 41 H 0.97004 * 119.99938 * 359.97438 * 15 13 12 42 42 H 0.97004 * 119.99723 * 180.02562 * 19 18 16 43 43 H 1.09003 * 110.37651 * 142.92619 * 24 11 10 44 44 H 1.09005 * 110.37646 * 265.15624 * 24 11 10 45 45 H 0.96704 * 114.00110 * 292.27319 * 27 25 24 46 46 H 1.09004 * 109.46626 * 60.00220 * 29 28 3 47 47 H 1.09000 * 109.47422 * 179.97438 * 29 28 3 48 48 H 1.09000 * 109.46863 * 300.00328 * 29 28 3 49 49 H 1.09002 * 109.47264 * 54.95641 * 30 28 3 50 50 H 1.09007 * 109.47150 * 174.95634 * 30 28 3 51 51 H 1.09001 * 109.47121 * 294.95044 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5920 1.9862 -0.8318 5 6 1.6619 2.1091 1.2976 6 8 2.4810 2.2163 2.1855 7 7 0.4134 2.5860 1.4714 8 6 0.0459 3.2344 2.7326 9 1 0.8806 3.8171 3.1223 10 6 -0.4203 2.1893 3.7680 11 7 -1.5596 2.7753 4.4976 12 6 -1.3015 2.8015 5.9434 13 6 -2.3647 3.6205 6.6288 14 8 -3.2507 4.1317 5.9770 15 7 -2.3318 3.7842 7.9662 16 6 -3.2987 4.5297 8.5897 17 1 -4.0871 4.9855 8.0092 18 6 -3.2644 4.6988 9.9684 19 7 -2.3053 4.1437 10.6748 20 14 -4.5823 5.7140 10.8179 21 1 -5.9142 5.1086 10.5638 22 1 -4.3210 5.7410 12.2796 23 1 -4.5590 7.1003 10.2858 24 6 -1.8008 4.1381 3.9777 25 6 -1.2102 4.1256 2.5457 26 1 -1.9075 3.6744 1.8397 27 8 -0.8457 5.4435 2.1307 28 7 3.5019 1.4450 -0.1439 29 6 4.1234 0.4850 0.7780 30 6 3.8946 1.1711 -1.5328 31 1 -0.3633 0.4288 0.9339 32 1 -0.3633 -1.0232 -0.0956 33 1 -0.3633 0.5943 -0.8384 34 1 1.8934 -0.5138 0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 -0.2417 2.5005 0.7611 37 1 -0.7349 1.2781 3.2591 38 1 0.3913 1.9658 4.4604 39 1 -1.3185 1.7840 6.3341 40 1 -0.3239 3.2459 6.1300 41 1 -1.6238 3.3744 8.4877 42 1 -2.2816 4.2615 11.6374 43 1 -2.8699 4.3483 3.9453 44 1 -1.2883 4.8760 4.5949 45 1 -1.5979 6.0372 2.0010 46 1 3.7528 -0.5173 0.5630 47 1 5.2057 0.5069 0.6502 48 1 3.8728 0.7526 1.8045 49 1 3.4053 1.8844 -2.1961 50 1 4.9760 1.2670 -1.6302 51 1 3.5939 0.1587 -1.8024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196208176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:43 Heat of formation + Delta-G solvation = -123.208553 kcal Electronic energy + Delta-G solvation = -31170.201754 eV Core-core repulsion = 26911.044950 eV Total energy + Delta-G solvation = -4259.156804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64558 -40.74954 -39.50949 -38.08172 -36.94029 -36.01945 -35.51549 -33.79371 -33.32755 -31.39153 -29.43135 -28.58763 -28.47408 -27.74691 -26.00586 -24.13855 -23.34581 -22.69977 -21.70657 -21.15377 -20.84120 -19.88621 -18.70671 -18.15010 -17.89528 -17.51893 -16.76514 -16.58859 -16.30626 -16.27117 -16.17882 -15.80349 -15.57339 -15.35264 -15.26423 -14.95883 -14.42483 -14.35959 -14.27005 -14.04694 -13.75540 -13.51174 -13.43744 -13.36810 -13.28318 -13.07510 -12.97573 -12.78682 -12.62881 -12.55717 -12.44595 -12.44147 -12.21262 -12.13110 -11.87676 -11.74614 -11.50481 -11.16119 -10.67667 -10.30081 -10.16783 -10.02897 -9.32411 -9.20743 -8.47853 -5.97018 1.38915 1.41051 1.52250 1.61592 1.94730 2.00870 2.27068 2.62254 3.07291 3.09882 3.18561 3.25578 3.53409 3.64812 3.80370 3.86191 3.93893 4.04127 4.19516 4.22955 4.29093 4.30887 4.36257 4.39709 4.46724 4.47666 4.51772 4.62011 4.62693 4.72788 4.81720 4.86252 4.88795 5.02079 5.09085 5.10930 5.11760 5.17280 5.37734 5.39401 5.43714 5.73274 5.87412 5.93220 6.01881 6.09790 6.54711 6.56836 6.75985 7.09753 7.27147 7.52031 8.06112 8.69347 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.002118 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.116360 B =13216.351251 C =13589.276377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C 0.072 3.928 4 H 0.125 0.875 5 C 0.521 3.479 6 O -0.567 6.567 7 N -0.701 5.701 8 C 0.141 3.859 9 H 0.071 0.929 10 C 0.039 3.961 11 N -0.508 5.508 12 C 0.048 3.952 13 C 0.440 3.560 14 O -0.611 6.611 15 N -0.572 5.572 16 C -0.332 4.332 17 H 0.083 0.917 18 C -0.016 4.016 19 N -0.921 5.921 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.036 3.964 25 C 0.099 3.901 26 H 0.106 0.894 27 O -0.570 6.570 28 N -0.550 5.550 29 C 0.018 3.982 30 C 0.024 3.976 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.088 0.912 44 H 0.025 0.975 45 H 0.400 0.600 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.271 -8.913 -25.812 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.181 4.181 3 C -0.040 4.040 4 H 0.143 0.857 5 C 0.308 3.692 6 O -0.444 6.444 7 N -0.355 5.355 8 C 0.034 3.966 9 H 0.089 0.911 10 C -0.089 4.089 11 N -0.233 5.233 12 C -0.084 4.084 13 C 0.227 3.773 14 O -0.497 6.497 15 N -0.209 5.209 16 C -0.461 4.461 17 H 0.101 0.899 18 C -0.215 4.215 19 N -0.562 5.562 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.092 4.092 25 C 0.039 3.961 26 H 0.124 0.876 27 O -0.378 6.378 28 N -0.274 5.274 29 C -0.130 4.130 30 C -0.123 4.123 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.254 0.746 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.251 0.749 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.667 -8.565 -25.327 28.105 hybrid contribution -0.425 0.286 1.068 1.184 sum 8.242 -8.278 -24.259 26.925 Atomic orbital electron populations 1.21917 0.93628 1.03453 1.02796 1.22049 0.98135 0.94731 1.03219 1.21799 0.89892 0.97093 0.95204 0.85747 1.21069 0.81128 0.77359 0.89638 1.90648 1.50505 1.57821 1.45471 1.45839 1.13149 1.59427 1.17080 1.21812 0.96568 0.92694 0.85540 0.91068 1.23283 0.91585 0.98321 0.95753 1.63427 1.37815 1.20313 1.01787 1.22082 0.95697 1.01327 0.89259 1.20564 0.88800 0.85327 0.82583 1.90453 1.40202 1.54367 1.64674 1.41932 1.26559 1.46410 1.05982 1.19647 1.06864 1.28617 0.91018 0.89897 1.26103 1.00088 0.98769 0.96566 1.69684 1.33582 1.44849 1.08101 0.84951 0.77835 0.78302 0.77033 1.19487 1.19675 1.19632 1.23533 1.02271 0.89083 0.94352 1.23165 0.94405 0.83904 0.94641 0.87595 1.86454 1.38833 1.22573 1.89950 1.61803 1.06272 1.51994 1.07297 1.22538 0.99520 0.93336 0.97586 1.22501 1.02147 1.00552 0.87141 0.92754 0.91428 0.90324 0.92369 0.89235 0.74573 0.88041 0.92248 0.87021 0.92126 0.77147 0.91300 0.89368 0.95656 0.74894 0.94184 0.91275 0.91816 0.90228 0.90833 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.97 71.98 0.65 -0.73 16 2 C -0.14 -1.59 4.32 30.60 0.13 -1.46 16 3 C 0.07 1.07 2.17 44.17 0.10 1.17 16 4 H 0.12 1.26 7.87 -2.39 -0.02 1.25 16 5 C 0.52 11.55 6.64 87.66 0.58 12.13 16 6 O -0.57 -17.88 13.93 -3.01 -0.04 -17.92 16 7 N -0.70 -13.08 4.05 -436.96 -1.77 -14.85 16 8 C 0.14 3.52 2.97 46.17 0.14 3.65 16 9 H 0.07 2.28 7.69 -2.39 -0.02 2.26 16 10 C 0.04 1.03 6.62 86.65 0.57 1.61 16 11 N -0.51 -16.50 5.21 -890.11 -4.64 -21.13 16 12 C 0.05 1.74 5.32 85.56 0.45 2.19 16 13 C 0.44 21.00 7.31 87.66 0.64 21.64 16 14 O -0.61 -32.38 13.13 -3.06 -0.04 -32.42 16 15 N -0.57 -29.71 5.29 -306.99 -1.62 -31.33 16 16 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 17 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 18 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 19 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 20 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.04 1.19 4.68 86.77 0.41 1.59 16 25 C 0.10 2.34 4.03 31.98 0.13 2.47 16 26 H 0.11 1.89 8.00 -2.38 -0.02 1.87 16 27 O -0.57 -13.40 13.47 -148.98 -2.01 -15.40 16 28 N -0.55 -9.65 4.75 -927.70 -4.41 -14.06 16 29 C 0.02 0.33 8.55 127.69 1.09 1.42 16 30 C 0.02 0.26 9.37 127.69 1.20 1.45 16 31 H 0.05 0.60 6.36 -2.39 -0.02 0.59 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.06 0.87 6.71 -2.38 -0.02 0.85 16 35 H 0.09 0.75 6.89 -2.39 -0.02 0.73 16 36 H 0.42 5.03 7.36 -92.71 -0.68 4.35 16 37 H 0.10 2.29 8.03 -2.38 -0.02 2.27 16 38 H 0.06 1.66 7.50 -2.39 -0.02 1.64 16 39 H 0.11 3.64 8.14 -2.38 -0.02 3.63 16 40 H 0.06 2.11 7.96 -2.39 -0.02 2.10 16 41 H 0.39 19.77 7.90 -92.71 -0.73 19.04 16 42 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.09 3.29 6.71 -2.39 -0.02 3.27 16 44 H 0.02 0.97 7.53 -2.38 -0.02 0.95 16 45 H 0.40 6.20 9.12 -74.05 -0.68 5.53 16 46 H 0.04 0.60 6.33 -2.39 -0.02 0.59 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.06 1.59 5.83 -2.39 -0.01 1.58 16 49 H 0.08 0.67 7.97 -2.39 -0.02 0.66 16 50 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.04 0.34 6.99 -2.39 -0.02 0.32 16 Total: -1.00 -74.83 398.79 -5.97 -80.80 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -1.12 Total: 42.65 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 7.36 Total: 28.76 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -12.16 Total: -131.48 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -2.09 Total: -65.74 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.83 -5.97 -80.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196208176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.406 kcal (2) G-P(sol) polarization free energy of solvation -74.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds