Wall clock time and date at job start Wed Apr 1 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 N 1.46897 * 109.47189 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99874 * 66.04571 * 4 3 2 6 6 C 1.46896 * 110.99950 * 189.99726 * 4 3 2 7 7 C 1.50698 * 109.47372 * 169.99986 * 6 4 3 8 8 O 1.21287 * 119.99730 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00606 * 180.02562 * 7 6 4 10 10 C 1.46502 * 120.00377 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.34730 * 35.69057 * 10 9 7 12 12 C 1.53994 * 110.30732 * 273.54790 * 10 9 7 13 13 N 1.47903 * 107.05424 * 242.30604 * 12 10 9 14 14 C 1.46904 * 111.00038 * 214.15460 * 13 12 10 15 15 C 1.50700 * 109.47192 * 170.00163 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00219 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47028 * 59.99886 * 22 20 18 24 24 H 1.48497 * 109.47531 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47039 * 300.00633 * 22 20 18 26 26 C 1.48527 * 105.82321 * 334.67235 * 13 12 10 27 27 C 1.54594 * 110.30922 * 157.82998 * 10 9 7 28 28 H 1.09002 * 110.72384 * 22.51774 * 27 10 9 29 29 O 1.42898 * 110.72596 * 259.23460 * 27 10 9 30 30 H 1.08999 * 109.47141 * 299.99872 * 1 2 3 31 31 H 1.09003 * 109.47188 * 59.99857 * 1 2 3 32 32 H 1.09007 * 109.47085 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47141 * 240.00128 * 2 1 3 34 34 H 1.09003 * 109.47188 * 120.00143 * 2 1 3 35 35 H 1.09000 * 109.47380 * 59.99691 * 3 2 1 36 36 H 1.09003 * 109.47151 * 300.00165 * 3 2 1 37 37 H 1.08997 * 109.46912 * 183.95291 * 5 4 3 38 38 H 1.08998 * 109.47181 * 303.95489 * 5 4 3 39 39 H 1.09004 * 109.47055 * 63.95643 * 5 4 3 40 40 H 1.09004 * 109.47210 * 50.00558 * 6 4 3 41 41 H 1.08999 * 109.47767 * 290.00294 * 6 4 3 42 42 H 0.97003 * 119.99741 * 0.02562 * 9 7 6 43 43 H 1.09001 * 109.91602 * 122.95669 * 12 10 9 44 44 H 1.08999 * 109.91843 * 1.66030 * 12 10 9 45 45 H 1.09009 * 109.46542 * 50.00194 * 14 13 12 46 46 H 1.08998 * 109.47050 * 290.00728 * 14 13 12 47 47 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 48 48 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 49 49 H 1.09003 * 110.66931 * 157.64305 * 26 13 12 50 50 H 1.09001 * 110.66633 * 280.76824 * 26 13 12 51 51 H 0.96705 * 114.00234 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8854 -1.2524 6 6 4.0353 2.7931 0.2387 7 6 5.5215 2.7184 0.4767 8 8 6.0867 1.6456 0.4501 9 7 6.2227 3.8435 0.7191 10 6 7.6674 3.7708 0.9510 11 1 8.1123 2.9934 0.3299 12 6 7.9568 3.4973 2.4386 13 7 8.7101 4.6607 2.9549 14 6 9.6859 4.2468 3.9721 15 6 10.5961 5.4036 4.2952 16 8 10.4463 6.4683 3.7338 17 7 11.5798 5.2535 5.2043 18 6 12.4113 6.3042 5.4942 19 1 12.2784 7.2521 4.9938 20 6 13.4251 6.1497 6.4317 21 7 13.5871 4.9962 7.0402 22 14 14.5586 7.5811 6.8262 23 1 13.7576 8.7175 7.3480 24 1 15.5484 7.1610 7.8504 25 1 15.2712 8.0026 5.5934 26 6 9.3898 5.2582 1.7772 27 6 8.3277 5.1370 0.6557 28 1 7.5968 5.9424 0.7281 29 8 8.9493 5.1307 -0.6310 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.1232 0.8321 -1.1974 38 1 3.6304 -0.1148 -1.4043 39 1 3.7453 1.5258 -2.0853 40 1 3.5485 3.2237 1.1138 41 1 3.8378 3.4188 -0.6316 42 1 5.7706 4.7015 0.7408 43 1 8.5558 2.5923 2.5401 44 1 7.0201 3.3891 2.9854 45 1 10.2775 3.4145 3.5904 46 1 9.1600 3.9350 4.8745 47 1 11.6993 4.4021 5.6535 48 1 14.2951 4.8883 7.6944 49 1 9.6348 6.3038 1.9638 50 1 10.2854 4.6919 1.5217 51 1 9.3788 5.9651 -0.8645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198021350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:23 Heat of formation + Delta-G solvation = -127.928048 kcal Electronic energy + Delta-G solvation = -30067.992277 eV Core-core repulsion = 25808.630820 eV Total energy + Delta-G solvation = -4259.361457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43451 -40.52784 -39.44340 -38.17165 -36.93197 -35.98969 -35.31406 -34.06699 -33.32751 -31.65595 -29.70641 -28.82398 -27.98246 -27.66259 -25.98124 -24.22636 -22.85588 -21.94371 -21.58543 -21.35718 -21.04971 -19.88151 -18.70995 -18.11638 -17.80975 -17.45469 -16.88078 -16.67021 -16.40608 -16.33413 -16.23288 -15.81971 -15.71707 -15.41574 -15.26851 -14.92261 -14.68201 -14.33729 -14.24883 -13.83979 -13.81936 -13.66273 -13.50678 -13.42977 -13.03701 -12.99948 -12.87033 -12.73772 -12.62817 -12.60257 -12.43393 -12.33641 -12.13251 -11.93639 -11.78081 -11.46827 -11.43754 -11.16973 -10.74019 -10.30596 -10.10032 -10.01908 -9.46380 -9.26970 -8.47027 -5.96171 1.39691 1.42167 1.53081 1.64958 1.96813 2.01451 2.27401 2.63686 3.00502 3.10881 3.19444 3.29477 3.57636 3.70707 3.90817 3.98931 3.99498 4.15336 4.19935 4.26549 4.30549 4.33588 4.35149 4.42273 4.48901 4.50466 4.55294 4.58419 4.63036 4.71229 4.78178 4.82514 4.86307 4.90155 5.09725 5.11893 5.25330 5.32010 5.40316 5.44206 5.46409 5.70945 5.79920 5.95217 6.02498 6.11723 6.58038 6.58242 6.75233 7.10924 7.29341 7.53185 8.07538 8.70043 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.001769 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.382733 B =15827.391511 C =16481.322897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.547 5.547 5 C 0.021 3.979 6 C 0.041 3.959 7 C 0.512 3.488 8 O -0.564 6.564 9 N -0.707 5.707 10 C 0.153 3.847 11 H 0.081 0.919 12 C 0.032 3.968 13 N -0.496 5.496 14 C 0.045 3.955 15 C 0.441 3.559 16 O -0.610 6.610 17 N -0.571 5.571 18 C -0.334 4.334 19 H 0.083 0.917 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.012 3.988 27 C 0.108 3.892 28 H 0.099 0.901 29 O -0.572 6.572 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.417 0.583 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.098 0.902 50 H 0.031 0.969 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.453 -5.310 -15.267 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.272 5.272 5 C -0.127 4.127 6 C -0.090 4.090 7 C 0.299 3.701 8 O -0.442 6.442 9 N -0.361 5.361 10 C 0.046 3.954 11 H 0.100 0.900 12 C -0.097 4.097 13 N -0.222 5.222 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.496 6.496 17 N -0.208 5.208 18 C -0.463 4.463 19 H 0.101 0.899 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.117 4.117 27 C 0.047 3.953 28 H 0.117 0.883 29 O -0.380 6.380 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.116 0.884 50 H 0.049 0.951 51 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -23.428 -5.976 -14.892 28.396 hybrid contribution 1.498 0.782 -0.203 1.703 sum -21.929 -5.194 -15.095 27.124 Atomic orbital electron populations 1.21705 0.94340 1.02178 1.02252 1.21521 0.96298 0.96035 1.02048 1.22250 0.85035 0.97928 1.01773 1.61605 1.08615 1.20630 1.36308 1.22488 1.01172 1.00115 0.88877 1.22030 0.90427 0.91705 1.04790 1.21145 0.90415 0.83342 0.75188 1.90681 1.72267 1.29835 1.51405 1.45865 1.07174 1.10540 1.72536 1.21378 0.81664 0.97498 0.94832 0.90048 1.23351 0.99754 0.92150 0.94399 1.64581 1.23107 1.24958 1.09557 1.22040 0.93659 0.94624 0.98358 1.20526 0.83433 0.90408 0.82770 1.90406 1.74103 1.30286 1.54852 1.41921 1.27922 1.14123 1.36819 1.19663 1.10488 0.93732 1.22426 0.89855 1.26071 0.99102 1.00433 0.95703 1.69680 1.33932 1.25036 1.27497 0.84963 0.77520 0.77556 0.78145 1.19566 1.19720 1.19628 1.23986 0.95434 1.02665 0.89593 1.22843 0.93709 0.96553 0.82146 0.88345 1.86434 1.75358 1.42720 1.33456 0.92175 0.92258 0.92323 0.92319 0.92394 0.89636 0.93755 0.92119 0.90848 0.95071 0.85373 0.89573 0.74570 0.93175 0.88788 0.91768 0.87086 0.77122 0.91318 0.88362 0.95098 0.74867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.45 5.86 30.59 0.18 -1.27 16 3 C 0.06 0.67 4.96 86.30 0.43 1.10 16 4 N -0.55 -9.28 4.50 -927.06 -4.17 -13.45 16 5 C 0.02 0.39 9.01 127.69 1.15 1.54 16 6 C 0.04 0.56 5.45 85.56 0.47 1.03 16 7 C 0.51 10.80 7.55 87.66 0.66 11.46 16 8 O -0.56 -17.12 14.01 -3.05 -0.04 -17.16 16 9 N -0.71 -12.98 5.03 -438.38 -2.20 -15.18 16 10 C 0.15 3.74 3.06 45.87 0.14 3.88 16 11 H 0.08 2.41 7.58 -2.39 -0.02 2.39 16 12 C 0.03 0.87 6.49 86.45 0.56 1.44 16 13 N -0.50 -15.98 5.26 -887.56 -4.67 -20.64 16 14 C 0.04 1.59 5.52 85.56 0.47 2.06 16 15 C 0.44 20.64 7.49 87.66 0.66 21.30 16 16 O -0.61 -31.77 13.10 -3.07 -0.04 -31.81 16 17 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 18 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 21 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 22 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 C 0.01 0.38 5.02 86.65 0.44 0.81 16 27 C 0.11 2.55 4.15 31.80 0.13 2.68 16 28 H 0.10 1.90 7.74 -2.39 -0.02 1.88 16 29 O -0.57 -13.09 13.40 -148.98 -2.00 -15.08 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.06 0.74 6.47 -2.39 -0.02 0.73 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.83 7.93 -2.39 -0.02 0.81 16 36 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16 37 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 38 H 0.07 1.22 6.30 -2.39 -0.02 1.20 16 39 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 40 H 0.13 1.16 7.93 -2.38 -0.02 1.14 16 41 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 42 H 0.42 4.98 8.35 -92.71 -0.77 4.20 16 43 H 0.05 1.41 7.57 -2.39 -0.02 1.39 16 44 H 0.09 2.39 7.92 -2.39 -0.02 2.37 16 45 H 0.06 2.14 7.81 -2.38 -0.02 2.13 16 46 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 47 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.10 3.71 5.97 -2.39 -0.01 3.70 16 50 H 0.03 1.09 8.02 -2.39 -0.02 1.07 16 51 H 0.40 6.07 9.12 -74.05 -0.68 5.39 16 Total: -1.00 -72.86 407.20 -6.37 -79.24 By element: Atomic # 1 Polarization: 43.64 SS G_CDS: -1.21 Total: 42.43 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 7.28 Total: 27.37 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -12.38 Total: -129.45 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -2.08 Total: -64.06 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.86 -6.37 -79.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198021350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.691 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds