Wall clock time and date at job start Wed Apr 1 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99952 * 2 1 4 4 C 1.53001 * 109.47306 * 125.08424 * 3 2 1 5 5 H 1.09004 * 109.47060 * 304.30862 * 4 3 2 6 6 C 1.53000 * 109.47193 * 184.30467 * 4 3 2 7 7 C 1.50700 * 109.47066 * 65.00297 * 6 4 3 8 8 C 1.38233 * 119.99986 * 269.72847 * 7 6 4 9 9 C 1.38234 * 119.99964 * 179.76690 * 8 7 6 10 10 C 1.38241 * 119.99955 * 0.50533 * 9 8 7 11 11 C 1.38233 * 120.00056 * 359.74025 * 10 9 8 12 12 C 1.38234 * 119.99962 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.46875 * 64.30561 * 4 3 2 14 14 O 1.21283 * 120.00131 * 55.79170 * 13 4 3 15 15 N 1.34771 * 120.00215 * 235.79266 * 13 4 3 16 16 C 1.48213 * 119.97329 * 174.69939 * 15 13 4 17 17 C 1.47150 * 110.19824 * 102.58406 * 16 15 13 18 18 C 1.53393 * 112.04524 * 58.39552 * 17 16 15 19 19 N 1.43464 * 107.86047 * 281.54013 * 18 17 16 20 20 C 1.36943 * 118.93785 * 273.58978 * 19 18 17 21 21 H 1.07994 * 120.00113 * 32.95612 * 20 19 18 22 22 C 1.38812 * 119.99557 * 212.95761 * 20 19 18 23 23 N 1.31616 * 120.00006 * 6.53537 * 22 20 19 24 24 Si 1.86803 * 119.99653 * 186.53439 * 22 20 19 25 25 H 1.48497 * 109.47235 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46827 * 120.00056 * 24 22 20 27 27 H 1.48500 * 109.46985 * 239.99812 * 24 22 20 28 28 C 1.48848 * 122.12023 * 93.60824 * 19 18 17 29 29 C 1.43627 * 119.96738 * 354.67862 * 15 13 4 30 30 H 1.07994 * 120.00267 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99874 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99885 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47010 * 5.08907 * 3 2 1 34 34 H 1.09001 * 109.47489 * 245.08906 * 3 2 1 35 35 H 1.09000 * 109.46536 * 184.99874 * 6 4 3 36 36 H 1.08994 * 109.47083 * 305.00323 * 6 4 3 37 37 H 1.07993 * 119.99989 * 359.97438 * 8 7 6 38 38 H 1.08000 * 120.00015 * 180.22612 * 9 8 7 39 39 H 1.07997 * 119.99957 * 179.72931 * 10 9 8 40 40 H 1.07998 * 120.00334 * 179.97438 * 11 10 9 41 41 H 1.08001 * 120.00348 * 179.97438 * 12 11 10 42 42 H 1.08995 * 109.32933 * 222.76523 * 16 15 13 43 43 H 1.09000 * 109.32402 * 342.41098 * 16 15 13 44 44 H 1.08992 * 109.00541 * 178.82194 * 17 16 15 45 45 H 1.09002 * 109.00312 * 297.60482 * 17 16 15 46 46 H 1.08998 * 109.82755 * 161.94657 * 18 17 16 47 47 H 1.08991 * 109.83793 * 41.13811 * 18 17 16 48 48 H 0.97004 * 119.99464 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.48018 * 200.64007 * 28 19 18 50 50 H 1.09000 * 109.49044 * 80.61507 * 28 19 18 51 51 H 1.09002 * 108.87475 * 31.44986 * 29 15 13 52 52 H 1.09008 * 108.87376 * 149.87882 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0366 1.3322 1.1804 5 1 2.4891 1.1575 2.1067 6 6 3.7236 2.6978 1.2437 7 6 2.6999 3.7616 1.5464 8 6 2.0439 4.4036 0.5128 9 6 1.1014 5.3759 0.7906 10 6 0.8225 5.7136 2.1018 11 6 1.4821 5.0752 3.1353 12 6 2.4211 4.0994 2.8576 13 6 4.0752 0.2553 1.0000 14 8 4.7447 0.2216 -0.0107 15 7 4.2601 -0.6705 1.9619 16 6 5.1968 -1.7966 1.7354 17 6 6.4628 -1.5550 2.4454 18 6 6.2517 -1.3753 3.9540 19 7 5.7709 -0.0418 4.1752 20 6 6.6777 0.9748 4.3150 21 1 7.6116 0.9436 3.7737 22 6 6.3962 2.0455 5.1525 23 7 5.3198 2.0236 5.9096 24 14 7.5454 3.5173 5.2050 25 1 8.6744 3.2976 4.2659 26 1 6.8021 4.7400 4.8074 27 1 8.0725 3.6848 6.5832 28 6 4.3183 0.2721 4.2581 29 6 3.5497 -0.5646 3.2056 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8501 -0.9354 -0.0004 33 1 1.3586 2.1315 0.0912 34 1 2.6201 1.4034 -0.9320 35 1 4.4801 2.6878 2.0284 36 1 4.1968 2.9113 0.2853 37 1 2.2653 4.1432 -0.5116 38 1 0.5863 5.8750 -0.0168 39 1 0.0893 6.4763 2.3187 40 1 1.2645 5.3392 4.1596 41 1 2.9368 3.6009 3.6650 42 1 4.7474 -2.7191 2.1030 43 1 5.3945 -1.8922 0.6678 44 1 7.1281 -2.4030 2.2831 45 1 6.9301 -0.6567 2.0420 46 1 7.1961 -1.5184 4.4791 47 1 5.5174 -2.0961 4.3132 48 1 5.1230 2.7719 6.4945 49 1 4.1639 1.3332 4.0621 50 1 3.9500 0.0293 5.2549 51 1 2.5828 -0.0966 3.0207 52 1 3.3842 -1.5658 3.6036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198198206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:00 Heat of formation + Delta-G solvation = 31.433744 kcal Electronic energy + Delta-G solvation = -32113.001614 eV Core-core repulsion = 28271.399866 eV Total energy + Delta-G solvation = -3841.601748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.20219 -38.99240 -37.14439 -35.59511 -34.19527 -33.31408 -32.57766 -30.90942 -30.71751 -29.88811 -27.52698 -26.27594 -25.62978 -23.76688 -23.53954 -22.35255 -21.58489 -20.51651 -19.82454 -19.74070 -17.96681 -17.35315 -16.55109 -16.29013 -15.87413 -15.48659 -15.04854 -14.81338 -14.77402 -14.41325 -14.08662 -13.77278 -13.60793 -13.24253 -13.11727 -12.99382 -12.79894 -12.64573 -12.56447 -12.36853 -12.28281 -12.00162 -11.80076 -11.43344 -11.23881 -11.02386 -10.96001 -10.85539 -10.79901 -10.66615 -10.58774 -10.53182 -10.21238 -10.17005 -9.86030 -9.65451 -9.27357 -9.12036 -8.72427 -8.51971 -8.48473 -7.99484 -6.58393 -5.81315 -3.31382 1.50992 1.58005 2.31679 3.14545 3.34132 3.43077 3.45522 3.56592 3.97285 4.47606 4.76239 4.90008 5.02951 5.11294 5.17630 5.22056 5.23330 5.30066 5.34808 5.40789 5.50131 5.51396 5.66441 5.67634 5.69173 5.76838 5.80059 5.86362 5.95188 5.95988 6.04773 6.09348 6.13565 6.16350 6.24230 6.30604 6.36088 6.46645 6.49001 6.56361 6.61577 6.67429 6.70784 6.80987 6.85775 6.89535 6.95986 7.08265 7.19371 7.37810 7.49512 7.80987 8.02941 8.48353 8.73187 9.21612 9.86055 10.35630 11.25851 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.005776 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.949028 B = 4846.569234 C = 7173.365102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.084 4.084 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.070 4.070 7 C -0.071 4.071 8 C -0.118 4.118 9 C -0.126 4.126 10 C -0.130 4.130 11 C -0.118 4.118 12 C -0.107 4.107 13 C 0.529 3.471 14 O -0.557 6.557 15 N -0.582 5.582 16 C 0.130 3.870 17 C -0.169 4.169 18 C 0.163 3.837 19 N -0.589 5.589 20 C -0.252 4.252 21 H 0.060 0.940 22 C 0.012 3.988 23 N -0.906 5.906 24 Si 0.894 3.106 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.290 1.290 28 C 0.167 3.833 29 C 0.075 3.925 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.032 0.968 48 H 0.252 0.748 49 H 0.071 0.929 50 H 0.042 0.958 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 -0.740 -8.029 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.163 4.163 3 C -0.122 4.122 4 C -0.116 4.116 5 H 0.114 0.886 6 C -0.108 4.108 7 C -0.071 4.071 8 C -0.137 4.137 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.136 4.136 12 C -0.125 4.125 13 C 0.318 3.682 14 O -0.436 6.436 15 N -0.313 5.313 16 C 0.008 3.992 17 C -0.210 4.210 18 C 0.035 3.965 19 N -0.310 5.310 20 C -0.382 4.382 21 H 0.078 0.922 22 C -0.186 4.186 23 N -0.550 5.550 24 Si 0.724 3.276 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.216 1.216 28 C 0.041 3.959 29 C -0.051 4.051 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.060 0.940 51 H 0.087 0.913 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.678 -0.671 -8.415 13.611 hybrid contribution 0.620 0.840 0.322 1.093 sum -10.058 0.169 -8.093 12.910 Atomic orbital electron populations 1.23774 0.95772 1.01552 1.02443 1.22994 0.96004 0.98619 0.98718 1.20830 0.97500 0.95647 0.98187 1.21301 0.95644 0.93951 1.00729 0.88629 1.20507 0.96232 0.90096 1.03939 1.19866 0.97084 0.96878 0.93279 1.21058 0.96981 0.96835 0.98776 1.21053 0.98617 0.98218 0.96496 1.21086 1.00366 1.00307 0.93018 1.21162 0.96696 0.96648 0.99095 1.21330 0.97330 0.97155 0.96660 1.20330 0.83442 0.81766 0.82704 1.90610 1.48604 1.74269 1.30112 1.47391 1.43269 1.25709 1.14939 1.20532 0.90386 0.87528 1.00705 1.21795 0.96687 1.01461 1.01034 1.20221 0.97397 0.87428 0.91451 1.43548 1.01306 1.02242 1.83932 1.19146 0.99662 0.99619 1.19788 0.92226 1.25137 0.97601 0.99766 0.96108 1.69958 1.26742 1.31169 1.27157 0.86346 0.80826 0.83039 0.77411 1.20305 1.21474 1.21636 1.21894 0.82717 0.97882 0.93403 1.22315 0.95499 1.01522 0.85744 0.88657 0.88780 0.87789 0.90185 0.90101 0.89156 0.90381 0.86282 0.86571 0.86642 0.86230 0.85024 0.92297 0.90733 0.92912 0.91334 0.93643 0.95015 0.93734 0.91069 0.93979 0.91297 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.15 -1.85 9.08 -36.03 -0.33 -2.18 16 3 C -0.08 -1.13 4.78 -27.89 -0.13 -1.27 16 4 C -0.10 -1.48 1.86 -91.77 -0.17 -1.65 16 5 H 0.10 1.48 5.30 -51.93 -0.28 1.21 16 6 C -0.07 -1.15 4.78 -27.88 -0.13 -1.28 16 7 C -0.07 -1.05 4.71 -104.62 -0.49 -1.55 16 8 C -0.12 -1.53 7.89 -39.58 -0.31 -1.84 16 9 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 10 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 11 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 12 C -0.11 -1.65 9.70 -39.58 -0.38 -2.03 16 13 C 0.53 9.65 5.65 -10.99 -0.06 9.59 16 14 O -0.56 -11.71 16.15 5.55 0.09 -11.62 16 15 N -0.58 -10.21 2.45 -176.65 -0.43 -10.65 16 16 C 0.13 2.16 5.68 -5.91 -0.03 2.13 16 17 C -0.17 -3.04 5.60 -29.34 -0.16 -3.21 16 18 C 0.16 3.26 5.63 -5.44 -0.03 3.23 16 19 N -0.59 -13.67 2.51 -172.26 -0.43 -14.10 16 20 C -0.25 -6.61 9.19 -15.06 -0.14 -6.75 16 21 H 0.06 1.62 7.84 -52.49 -0.41 1.21 16 22 C 0.01 0.33 5.10 -17.43 -0.09 0.24 16 23 N -0.91 -24.36 10.99 55.49 0.61 -23.75 16 24 Si 0.89 21.36 29.56 -169.99 -5.02 16.33 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.17 3.56 5.15 -1.76 -0.01 3.55 16 29 C 0.07 1.27 5.05 -4.58 -0.02 1.24 16 30 H 0.10 0.98 7.84 -52.49 -0.41 0.57 16 31 H 0.09 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.10 1.42 7.74 -52.48 -0.41 1.01 16 33 H 0.08 0.99 5.64 -51.93 -0.29 0.70 16 34 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 35 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 36 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 37 H 0.12 1.37 8.02 -52.49 -0.42 0.94 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 43 H 0.07 1.27 7.18 -51.93 -0.37 0.90 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 46 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 47 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 48 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 49 H 0.07 1.67 6.87 -51.93 -0.36 1.31 16 50 H 0.04 0.98 7.91 -51.93 -0.41 0.56 16 51 H 0.07 1.05 5.62 -51.93 -0.29 0.76 16 52 H 0.06 0.93 7.73 -51.92 -0.40 0.53 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -29.21 407.40 -10.95 -40.16 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.61 Total: 6.84 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.28 Total: -9.35 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.26 Total: -48.50 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.21 -10.95 -40.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198198206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.589 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds