Wall clock time and date at job start Wed Apr 1 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99618 * 2 1 4 4 C 1.52999 * 109.46875 * 124.92818 * 3 2 1 5 5 H 1.09003 * 109.47392 * 174.46711 * 4 3 2 6 6 C 1.53004 * 109.47028 * 294.46811 * 4 3 2 7 7 C 1.50697 * 109.46856 * 293.48548 * 6 4 3 8 8 C 1.38238 * 120.00011 * 274.75692 * 7 6 4 9 9 C 1.38228 * 120.00343 * 179.76985 * 8 7 6 10 10 C 1.38238 * 119.99716 * 0.50855 * 9 8 7 11 11 C 1.38240 * 119.99997 * 359.74691 * 10 9 8 12 12 C 1.38227 * 120.00111 * 95.03934 * 7 6 4 13 13 C 1.50698 * 109.47099 * 54.46698 * 4 3 2 14 14 O 1.21285 * 120.00517 * 258.09106 * 13 4 3 15 15 N 1.34778 * 120.00118 * 78.09469 * 13 4 3 16 16 C 1.48210 * 119.97017 * 3.56242 * 15 13 4 17 17 C 1.47140 * 110.34648 * 102.46494 * 16 15 13 18 18 C 1.53801 * 111.84090 * 58.29638 * 17 16 15 19 19 N 1.43466 * 107.96162 * 281.67894 * 18 17 16 20 20 C 1.36938 * 118.93712 * 273.62367 * 19 18 17 21 21 H 1.08003 * 119.99780 * 29.16941 * 20 19 18 22 22 C 1.38808 * 120.00180 * 209.17286 * 20 19 18 23 23 N 1.31615 * 120.00285 * 9.92920 * 22 20 19 24 24 Si 1.86807 * 120.00253 * 189.93287 * 22 20 19 25 25 H 1.48499 * 109.46870 * 89.99439 * 24 22 20 26 26 H 1.48493 * 109.47082 * 209.99896 * 24 22 20 27 27 H 1.48499 * 109.46656 * 329.99884 * 24 22 20 28 28 C 1.48857 * 122.12550 * 93.64757 * 19 18 17 29 29 C 1.43624 * 119.97537 * 183.28923 * 15 13 4 30 30 H 1.07999 * 120.00383 * 0.26091 * 1 2 3 31 31 H 1.07998 * 120.00239 * 180.27869 * 1 2 3 32 32 H 1.07995 * 120.00030 * 179.73527 * 2 1 3 33 33 H 1.09004 * 109.47327 * 244.92068 * 3 2 1 34 34 H 1.08998 * 109.47811 * 4.92565 * 3 2 1 35 35 H 1.08998 * 109.46901 * 53.48755 * 6 4 3 36 36 H 1.09002 * 109.46916 * 173.48174 * 6 4 3 37 37 H 1.08003 * 119.99790 * 0.02562 * 8 7 6 38 38 H 1.07993 * 120.00233 * 180.23415 * 9 8 7 39 39 H 1.08000 * 120.00176 * 179.72166 * 10 9 8 40 40 H 1.07995 * 120.00029 * 179.97438 * 11 10 9 41 41 H 1.08009 * 120.00227 * 359.97438 * 12 7 6 42 42 H 1.09000 * 109.32669 * 222.73678 * 16 15 13 43 43 H 1.08997 * 109.32746 * 342.37637 * 16 15 13 44 44 H 1.08997 * 109.00879 * 178.90281 * 17 16 15 45 45 H 1.09001 * 109.01064 * 297.76665 * 17 16 15 46 46 H 1.09003 * 109.75934 * 41.29036 * 18 17 16 47 47 H 1.08994 * 109.76377 * 162.00744 * 18 17 16 48 48 H 0.96992 * 120.00745 * 179.97438 * 23 22 20 49 49 H 1.09007 * 109.47873 * 80.57656 * 28 19 18 50 50 H 1.08997 * 109.48323 * 200.61429 * 28 19 18 51 51 H 1.08995 * 108.87020 * 31.46375 * 29 15 13 52 52 H 1.08990 * 108.87530 * 149.90635 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0336 1.3339 1.1827 5 1 3.6475 2.2329 1.1273 6 6 2.2419 1.3368 2.4919 7 6 1.4773 2.6297 2.6137 8 6 2.0921 3.7490 3.1429 9 6 1.3924 4.9363 3.2502 10 6 0.0745 5.0014 2.8380 11 6 -0.5420 3.8807 2.3137 12 6 0.1595 2.6948 2.2016 13 6 3.9204 0.1164 1.1346 14 8 3.6979 -0.8253 1.8659 15 7 4.9609 0.0738 0.2790 16 6 5.2801 1.2547 -0.5578 17 6 6.4329 1.9799 -0.0009 18 6 7.6780 1.0828 0.1016 19 7 7.5274 0.2474 1.2583 20 6 7.9333 0.7232 2.4765 21 1 7.9094 1.7841 2.6771 22 6 8.3755 -0.1581 3.4535 23 7 8.5911 -1.4210 3.1518 24 14 8.6646 0.4481 5.1967 25 1 7.4140 0.3043 5.9844 26 1 9.7424 -0.3551 5.8277 27 1 9.0670 1.8771 5.1633 28 6 6.9447 -1.1199 1.1767 29 6 5.7630 -1.1137 0.1831 30 1 -0.5401 0.9353 -0.0043 31 1 -0.5400 -0.9353 0.0045 32 1 1.8500 -0.9353 0.0043 33 1 2.6223 1.4021 -0.9308 34 1 1.3584 2.1318 0.0882 35 1 1.5435 0.4999 2.4960 36 1 2.9292 1.2405 3.3324 37 1 3.1206 3.6970 3.4686 38 1 1.8739 5.8117 3.6601 39 1 -0.4736 5.9278 2.9260 40 1 -1.5717 3.9315 1.9921 41 1 -0.3222 1.8192 1.7920 42 1 5.5153 0.9265 -1.5703 43 1 4.4177 1.9207 -0.5858 44 1 6.6606 2.8311 -0.6424 45 1 6.1764 2.3441 0.9940 46 1 7.7607 0.4638 -0.7918 47 1 8.5698 1.7006 0.2058 48 1 8.9005 -2.0368 3.8343 49 1 7.7066 -1.8198 0.8334 50 1 6.5897 -1.4231 2.1616 51 1 5.1343 -1.9809 0.3847 52 1 6.1556 -1.1931 -0.8305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198198209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:02 Heat of formation + Delta-G solvation = 17.131399 kcal Electronic energy + Delta-G solvation = -31644.136190 eV Core-core repulsion = 27801.914246 eV Total energy + Delta-G solvation = -3842.221944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62006 -40.14794 -38.68709 -36.94402 -36.03348 -34.01483 -33.80629 -32.91808 -31.72228 -31.24617 -29.26137 -27.43430 -27.06571 -25.76915 -24.67442 -23.40916 -22.99610 -21.73838 -21.44270 -20.97652 -19.38959 -18.68484 -17.92966 -17.44714 -17.35370 -16.88036 -16.55385 -16.20284 -15.96172 -15.72234 -15.53629 -15.41280 -15.12392 -14.71570 -14.44440 -14.19816 -14.03275 -13.95507 -13.89525 -13.81198 -13.53841 -13.28046 -13.11190 -12.88128 -12.86137 -12.53219 -12.44669 -12.25719 -12.23399 -12.07937 -11.91746 -11.84207 -11.75981 -11.68084 -11.54018 -11.41326 -10.59646 -10.51741 -10.19456 -9.75894 -9.55600 -9.47428 -8.61394 -7.86152 -5.35521 0.47887 0.54774 1.37179 1.40639 1.40751 1.47129 1.78454 2.24224 2.47536 2.92563 3.29067 3.45481 3.72629 3.78062 3.94992 3.98495 4.02029 4.11782 4.13993 4.22622 4.32518 4.33495 4.38615 4.43676 4.46124 4.56088 4.58659 4.66636 4.70335 4.80198 4.83030 4.85663 4.87231 4.95420 4.96266 5.05183 5.10568 5.13052 5.22150 5.23376 5.28356 5.33229 5.54445 5.59505 5.63493 5.67869 5.69734 5.78079 5.79857 5.89597 5.90784 6.17479 6.40476 6.59822 7.16818 7.37496 7.93939 8.36079 9.18043 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003962 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.188011 B = 7065.029955 C = 8238.508941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C -0.075 4.075 4 C -0.083 4.083 5 H 0.100 0.900 6 C -0.056 4.056 7 C -0.082 4.082 8 C -0.134 4.134 9 C -0.123 4.123 10 C -0.127 4.127 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.515 3.485 14 O -0.591 6.591 15 N -0.586 5.586 16 C 0.114 3.886 17 C -0.160 4.160 18 C 0.154 3.846 19 N -0.603 5.603 20 C -0.256 4.256 21 H 0.061 0.939 22 C -0.048 4.048 23 N -0.936 5.936 24 Si 0.955 3.045 25 H -0.297 1.297 26 H -0.292 1.292 27 H -0.263 1.263 28 C 0.182 3.818 29 C 0.105 3.895 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.051 0.949 47 H 0.037 0.963 48 H 0.246 0.754 49 H 0.013 0.987 50 H 0.022 0.978 51 H 0.056 0.944 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.831 13.045 -10.685 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C -0.112 4.112 4 C -0.104 4.104 5 H 0.119 0.881 6 C -0.094 4.094 7 C -0.082 4.082 8 C -0.153 4.153 9 C -0.141 4.141 10 C -0.145 4.145 11 C -0.137 4.137 12 C -0.140 4.140 13 C 0.305 3.695 14 O -0.472 6.472 15 N -0.316 5.316 16 C -0.007 4.007 17 C -0.201 4.201 18 C 0.028 3.972 19 N -0.326 5.326 20 C -0.387 4.387 21 H 0.079 0.921 22 C -0.244 4.244 23 N -0.582 5.582 24 Si 0.784 3.216 25 H -0.225 1.225 26 H -0.218 1.218 27 H -0.187 1.187 28 C 0.056 3.944 29 C -0.021 4.021 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.031 0.969 50 H 0.040 0.960 51 H 0.074 0.926 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.850 12.429 -10.267 24.803 hybrid contribution 1.074 -0.655 1.731 2.140 sum -17.775 11.774 -8.536 22.966 Atomic orbital electron populations 1.23975 0.95153 1.02753 1.00170 1.22831 0.96782 0.97714 1.00630 1.20799 0.97585 0.96559 0.96302 1.21204 0.96065 0.95739 0.97403 0.88148 1.20268 0.97932 0.95442 0.95753 1.19756 0.95027 0.94230 0.99208 1.21197 1.00118 0.93521 1.00430 1.21365 0.95337 0.97567 0.99799 1.21471 0.94813 0.99549 0.98651 1.21459 1.00819 0.92431 0.99013 1.21307 0.93393 0.99116 1.00216 1.21043 0.81080 0.88997 0.78428 1.90646 1.73750 1.40445 1.42377 1.47527 1.27956 1.15453 1.40644 1.21125 0.98823 0.86442 0.94277 1.21739 0.97405 0.99954 1.00957 1.20507 0.95391 0.92414 0.88933 1.43832 1.70566 1.14294 1.03900 1.19393 1.35252 0.92185 0.91885 0.92082 1.25776 0.99759 0.96451 1.02368 1.70136 1.50941 1.04216 1.32950 0.85448 0.76703 0.78274 0.81187 1.22488 1.21832 1.18742 1.21370 0.90982 0.85689 0.96342 1.21505 0.92800 0.87750 1.00023 0.86470 0.88250 0.90175 0.88874 0.88360 0.91001 0.93873 0.87181 0.84700 0.83776 0.83577 0.85033 0.88583 0.87875 0.88390 0.94388 0.93068 0.94476 0.94521 0.96930 0.95978 0.92604 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.34 13.44 67.78 0.91 -2.43 16 2 C -0.16 -3.70 7.82 25.65 0.20 -3.50 16 3 C -0.08 -1.54 5.01 29.85 0.15 -1.39 16 4 C -0.08 -2.29 1.61 -11.54 -0.02 -2.31 16 5 H 0.10 2.63 6.92 -2.39 -0.02 2.61 16 6 C -0.06 -1.66 4.07 29.85 0.12 -1.54 16 7 C -0.08 -1.97 4.61 -19.87 -0.09 -2.06 16 8 C -0.13 -3.17 9.72 22.27 0.22 -2.96 16 9 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 10 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 11 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 12 C -0.12 -2.36 8.24 22.27 0.18 -2.17 16 13 C 0.51 19.05 5.60 87.66 0.49 19.54 16 14 O -0.59 -27.68 15.52 -3.04 -0.05 -27.72 16 15 N -0.59 -20.13 2.47 -832.21 -2.05 -22.19 16 16 C 0.11 2.84 5.20 84.23 0.44 3.28 16 17 C -0.16 -4.70 5.64 29.04 0.16 -4.54 16 18 C 0.15 5.89 5.63 87.21 0.49 6.38 16 19 N -0.60 -30.04 2.53 -699.00 -1.77 -31.81 16 20 C -0.26 -14.43 9.24 84.03 0.78 -13.65 16 21 H 0.06 3.37 7.85 -2.91 -0.02 3.35 16 22 C -0.05 -2.84 5.04 84.86 0.43 -2.41 16 23 N -0.94 -58.14 10.91 21.65 0.24 -57.91 16 24 Si 0.95 47.71 29.57 68.60 2.03 49.74 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 26 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 27 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.18 9.25 5.14 86.40 0.44 9.70 16 29 C 0.11 4.11 5.18 87.39 0.45 4.56 16 30 H 0.12 1.61 6.79 -2.91 -0.02 1.59 16 31 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.08 2.34 7.31 -2.91 -0.02 2.32 16 33 H 0.09 1.60 6.64 -2.38 -0.02 1.58 16 34 H 0.10 1.69 5.88 -2.39 -0.01 1.67 16 35 H 0.07 2.23 7.08 -2.39 -0.02 2.21 16 36 H 0.04 1.55 8.11 -2.39 -0.02 1.53 16 37 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.13 2.25 5.97 -2.91 -0.02 2.23 16 42 H 0.10 1.90 8.06 -2.39 -0.02 1.88 16 43 H 0.10 1.99 4.56 -2.39 -0.01 1.98 16 44 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.04 1.35 7.91 -2.39 -0.02 1.33 16 46 H 0.05 1.76 7.58 -2.39 -0.02 1.75 16 47 H 0.04 1.46 8.02 -2.39 -0.02 1.45 16 48 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.01 0.69 7.95 -2.38 -0.02 0.67 16 50 H 0.02 1.33 6.68 -2.39 -0.02 1.32 16 51 H 0.06 2.31 7.42 -2.39 -0.02 2.30 16 52 H 0.09 2.82 7.73 -2.39 -0.02 2.80 16 Total: -1.00 -75.80 398.86 5.32 -70.48 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.89 Total: 20.37 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.03 Total: -0.97 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.58 Total: -111.90 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -75.80 5.32 -70.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198198209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.616 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds