Wall clock time and date at job start Wed Apr 1 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46817 * 2 1 4 4 N 1.46497 * 109.46788 * 180.02562 * 3 2 1 5 5 C 1.34783 * 119.99672 * 180.02562 * 4 3 2 6 6 O 1.21584 * 120.00217 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99705 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99521 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47224 * 60.00126 * 8 7 5 10 10 C 1.52999 * 109.47196 * 299.99717 * 8 7 5 11 11 C 1.50705 * 109.46584 * 179.97438 * 8 7 5 12 12 O 1.21283 * 119.99415 * 144.99880 * 11 8 7 13 13 N 1.34769 * 120.00319 * 324.99942 * 11 8 7 14 14 C 1.46504 * 119.99954 * 179.97438 * 13 11 8 15 15 H 1.09008 * 110.88332 * 37.43118 * 14 13 11 16 16 C 1.54903 * 111.00714 * 273.55086 * 14 13 11 17 17 N 1.47428 * 104.83203 * 204.91620 * 16 14 13 18 18 C 1.36931 * 125.65100 * 204.09118 * 17 16 14 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47025 * 108.70179 * 24.35447 * 17 16 14 27 27 C 1.54340 * 107.26610 * 358.58750 * 26 17 16 28 28 H 1.08991 * 110.66849 * 96.52134 * 27 26 17 29 29 O 1.42897 * 110.84585 * 219.67264 * 27 26 17 30 30 H 1.08994 * 109.46982 * 299.99717 * 1 2 3 31 31 H 1.08998 * 109.46866 * 59.99651 * 1 2 3 32 32 H 1.08998 * 109.46845 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46788 * 240.00617 * 2 1 3 34 34 H 1.08996 * 109.47166 * 119.99907 * 2 1 3 35 35 H 1.09008 * 109.46895 * 60.00280 * 3 2 1 36 36 H 1.08999 * 109.47182 * 300.00416 * 3 2 1 37 37 H 0.97002 * 120.00353 * 0.02562 * 4 3 2 38 38 H 0.96994 * 120.00005 * 359.97438 * 7 5 4 39 39 H 1.09001 * 109.47209 * 180.02562 * 9 8 7 40 40 H 1.08997 * 109.47276 * 299.99395 * 9 8 7 41 41 H 1.08992 * 109.47700 * 59.99866 * 9 8 7 42 42 H 1.09003 * 109.46866 * 299.99823 * 10 8 7 43 43 H 1.09000 * 109.46944 * 60.00212 * 10 8 7 44 44 H 1.09001 * 109.47034 * 180.02562 * 10 8 7 45 45 H 0.97000 * 120.00045 * 0.02562 * 13 11 8 46 46 H 1.08997 * 110.36681 * 86.08083 * 16 14 13 47 47 H 1.08996 * 110.36857 * 323.75280 * 16 14 13 48 48 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.88449 * 118.13429 * 26 17 16 50 50 H 1.09002 * 109.88111 * 239.29552 * 26 17 16 51 51 H 0.96701 * 114.00562 * 293.69150 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6099 -0.0002 6 8 3.5709 3.6628 0.0002 7 7 5.5266 2.6099 -0.0013 8 6 6.2590 3.8787 -0.0003 9 6 5.8904 4.6793 1.2503 10 6 5.8884 4.6825 -1.2482 11 6 7.7407 3.6033 -0.0012 12 8 8.4938 4.3390 -0.6032 13 7 8.2288 2.5395 0.6669 14 6 9.6691 2.2715 0.6655 15 1 10.2373 3.2008 0.7091 16 6 10.0761 1.4293 -0.5692 17 7 11.3126 0.7369 -0.1628 18 6 12.2787 0.2652 -1.0108 19 1 12.1679 0.3890 -2.0780 20 6 13.4006 -0.3722 -0.4990 21 7 13.5359 -0.5227 0.8016 22 14 14.7222 -1.0087 -1.6555 23 1 14.4133 -2.4104 -2.0365 24 1 14.7630 -0.1619 -2.8746 25 1 16.0411 -0.9601 -0.9747 26 6 11.3335 0.6311 1.3034 27 6 10.0597 1.3247 1.8310 28 1 9.2720 0.5943 2.0150 29 8 10.3412 2.0714 3.0164 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.9900 0.6025 -0.0013 38 1 6.0116 1.7699 -0.0020 39 1 6.4350 5.6236 1.2508 40 1 4.8188 4.8785 1.2514 41 1 6.1544 4.1068 2.1393 42 1 6.1511 4.1120 -2.1391 43 1 4.8167 4.8816 -1.2471 44 1 6.4337 5.6263 -1.2477 45 1 7.6265 1.9509 1.1481 46 1 10.2679 2.0776 -1.4241 47 1 9.2970 0.7054 -0.8081 48 1 14.3201 -0.9677 1.1593 49 1 11.3364 -0.4179 1.5994 50 1 12.2171 1.1323 1.6987 51 1 10.5906 1.5260 3.7750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199042531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:10 Heat of formation + Delta-G solvation = -116.949019 kcal Electronic energy + Delta-G solvation = -31187.439192 eV Core-core repulsion = 26928.553822 eV Total energy + Delta-G solvation = -4258.885371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98303 -40.73234 -39.53228 -37.33789 -36.67980 -36.18623 -35.65506 -33.88878 -33.59454 -31.86583 -30.27417 -28.87982 -28.27070 -27.01140 -26.51718 -24.65981 -22.56992 -22.42579 -22.02038 -21.93647 -20.71960 -19.84137 -19.02409 -18.62386 -18.10898 -17.37823 -16.84804 -16.80129 -16.53416 -16.28339 -15.81381 -15.70504 -15.61924 -15.39580 -15.14221 -14.83646 -14.46702 -14.40475 -14.03920 -13.79607 -13.77879 -13.48990 -13.36351 -13.19333 -13.16341 -13.14940 -12.92660 -12.79032 -12.75728 -12.70526 -12.37377 -12.11024 -11.96492 -11.89287 -11.69251 -11.55922 -11.42301 -11.01399 -10.77588 -10.71112 -10.41634 -10.28894 -9.86292 -8.97221 -7.89496 -5.26212 1.22225 1.45701 1.47644 1.56143 1.73296 1.82219 2.15255 2.46913 3.11093 3.19299 3.30721 3.40517 3.51941 3.82155 3.87544 3.96618 3.98416 4.03965 4.15100 4.18196 4.41375 4.43525 4.53530 4.59677 4.69275 4.74403 4.75141 4.81501 4.82182 4.82991 4.90063 4.94353 5.14614 5.20869 5.22990 5.29927 5.30571 5.36079 5.38661 5.39806 5.44843 5.59495 5.66864 5.90968 6.13306 6.34921 6.86884 7.00923 7.04162 7.05978 7.56744 7.69109 8.30765 9.20071 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.002481 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.810170 B =11281.130507 C =12092.268171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.138 3.862 4 N -0.734 5.734 5 C 0.708 3.292 6 O -0.615 6.615 7 N -0.732 5.732 8 C 0.193 3.807 9 C -0.154 4.154 10 C -0.146 4.146 11 C 0.520 3.480 12 O -0.562 6.562 13 N -0.694 5.694 14 C 0.152 3.848 15 H 0.071 0.929 16 C 0.132 3.868 17 N -0.621 5.621 18 C -0.246 4.246 19 H 0.081 0.919 20 C -0.061 4.061 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.294 1.294 26 C 0.161 3.839 27 C 0.092 3.908 28 H 0.099 0.901 29 O -0.569 6.569 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.411 0.589 38 H 0.408 0.592 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.414 0.586 46 H 0.033 0.967 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.028 0.972 50 H 0.020 0.980 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.189 -0.165 3.290 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.014 3.986 4 N -0.391 5.391 5 C 0.408 3.592 6 O -0.495 6.495 7 N -0.391 5.391 8 C 0.103 3.897 9 C -0.212 4.212 10 C -0.204 4.204 11 C 0.306 3.694 12 O -0.438 6.438 13 N -0.346 5.346 14 C 0.046 3.954 15 H 0.089 0.911 16 C 0.005 3.995 17 N -0.349 5.349 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.220 1.220 26 C 0.035 3.965 27 C 0.032 3.968 28 H 0.116 0.884 29 O -0.377 6.377 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.247 0.753 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.252 0.748 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.046 0.954 50 H 0.038 0.962 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -25.158 1.720 2.498 25.340 hybrid contribution 1.652 -1.733 -0.011 2.394 sum -23.506 -0.014 2.487 23.637 Atomic orbital electron populations 1.21686 0.94239 1.02663 1.02242 1.21694 0.97095 0.94244 1.03562 1.21303 0.77499 0.98350 1.01478 1.45092 1.07687 1.06914 1.79365 1.15950 0.81304 0.84632 0.77359 1.90858 1.68373 1.31361 1.58878 1.45088 1.04832 1.08492 1.80681 1.20182 0.85012 0.85365 0.99154 1.22156 1.04353 0.99948 0.94762 1.22021 1.03388 1.00043 0.94974 1.20834 0.90508 0.80294 0.77811 1.90752 1.60188 1.48549 1.44332 1.45725 1.07497 1.28648 1.52739 1.21796 0.81088 0.97933 0.94618 0.91052 1.21928 0.88859 0.93478 0.95219 1.44497 1.20402 1.67337 1.02670 1.19413 0.98203 1.30235 0.89602 0.90160 1.25623 1.00455 1.01631 0.97723 1.70120 1.29706 1.48452 1.11298 0.85078 0.78105 0.78278 0.77855 1.20756 1.19865 1.22023 1.21641 0.93971 0.97374 0.83538 1.23145 0.96838 0.92127 0.84703 0.88373 1.86437 1.91353 1.38296 1.21582 0.92390 0.92580 0.91378 0.90650 0.90340 0.92382 0.92763 0.75279 0.75544 0.91262 0.89403 0.91027 0.92835 0.89728 0.91265 0.74752 0.94907 0.93492 0.94155 0.95381 0.96212 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.30 16 2 C -0.13 -0.89 6.05 30.60 0.19 -0.71 16 3 C 0.14 1.67 5.67 86.38 0.49 2.16 16 4 N -0.73 -9.32 5.56 -478.51 -2.66 -11.98 16 5 C 0.71 13.65 7.98 179.05 1.43 15.08 16 6 O -0.61 -16.16 12.55 -3.98 -0.05 -16.21 16 7 N -0.73 -12.62 4.86 -441.44 -2.15 -14.76 16 8 C 0.19 4.39 0.98 2.86 0.00 4.39 16 9 C -0.15 -3.30 8.38 71.98 0.60 -2.70 16 10 C -0.15 -3.63 7.93 71.98 0.57 -3.06 16 11 C 0.52 14.73 6.65 87.66 0.58 15.31 16 12 O -0.56 -21.14 15.84 -3.04 -0.05 -21.18 16 13 N -0.69 -17.57 4.93 -435.96 -2.15 -19.71 16 14 C 0.15 5.29 3.04 46.38 0.14 5.43 16 15 H 0.07 3.02 7.73 -2.38 -0.02 3.00 16 16 C 0.13 5.33 6.93 86.85 0.60 5.93 16 17 N -0.62 -31.15 3.39 -691.97 -2.35 -33.49 16 18 C -0.25 -13.64 10.28 84.03 0.86 -12.78 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 21 N -0.95 -55.05 10.31 21.65 0.22 -54.82 16 22 Si 0.98 45.16 29.55 68.60 2.03 47.18 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 C 0.16 7.40 5.16 86.73 0.45 7.85 16 27 C 0.09 3.03 3.95 31.79 0.13 3.16 16 28 H 0.10 2.49 7.99 -2.39 -0.02 2.47 16 29 O -0.57 -17.57 13.39 -148.98 -2.00 -19.56 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.41 2.93 8.49 -92.71 -0.79 2.15 16 38 H 0.41 5.15 7.25 -92.71 -0.67 4.48 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 2.03 6.17 -2.39 -0.01 2.02 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 2.17 6.16 -2.39 -0.01 2.15 16 44 H 0.07 1.80 7.87 -2.39 -0.02 1.78 16 45 H 0.41 7.33 7.26 -92.71 -0.67 6.66 16 46 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 49 H 0.03 1.40 7.52 -2.39 -0.02 1.38 16 50 H 0.02 1.06 7.28 -2.39 -0.02 1.05 16 51 H 0.40 8.87 9.12 -74.06 -0.68 8.20 16 Total: -1.00 -76.46 406.78 -3.76 -80.22 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -1.83 Total: 27.50 kcal Atomic # 6 Polarization: 29.60 SS G_CDS: 7.22 Total: 36.83 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -9.08 Total: -134.77 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -2.09 Total: -56.95 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.46 -3.76 -80.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199042531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.733 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds