Wall clock time and date at job start Wed Apr 1 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46767 * 2 1 4 4 N 1.46900 * 109.47329 * 119.99761 * 2 1 3 5 5 C 1.46889 * 111.00287 * 183.95763 * 4 2 1 6 6 C 1.46905 * 110.99932 * 60.00043 * 4 2 1 7 7 C 1.50697 * 109.47390 * 189.99951 * 6 4 2 8 8 O 1.21289 * 119.99866 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00137 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99760 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.36955 * 32.82705 * 10 9 7 12 12 C 1.54379 * 110.32464 * 270.63888 * 10 9 7 13 13 N 1.48562 * 104.59486 * 264.95799 * 12 10 9 14 14 C 1.46895 * 110.99842 * 200.96032 * 13 12 10 15 15 C 1.50703 * 109.47036 * 190.00016 * 14 13 12 16 16 O 1.21298 * 119.99939 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00134 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99975 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99717 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99954 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47370 * 89.99489 * 22 20 18 24 24 H 1.48504 * 109.47156 * 209.99563 * 22 20 18 25 25 H 1.48496 * 109.47220 * 329.99526 * 22 20 18 26 26 C 1.48562 * 104.22433 * 320.51965 * 13 12 10 27 27 C 1.54266 * 110.32047 * 155.00426 * 10 9 7 28 28 H 1.09003 * 110.32265 * 359.97438 * 27 10 9 29 29 O 1.42902 * 110.32008 * 237.79242 * 27 10 9 30 30 H 1.08997 * 109.47158 * 59.99896 * 1 2 3 31 31 H 1.09002 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47118 * 299.99743 * 1 2 3 33 33 H 1.08994 * 109.47118 * 240.00257 * 2 1 3 34 34 H 1.09001 * 109.47091 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47366 * 299.99976 * 3 2 1 36 36 H 1.09008 * 109.47134 * 60.00066 * 3 2 1 37 37 H 1.09000 * 109.47507 * 296.04782 * 5 4 2 38 38 H 1.09004 * 109.47371 * 56.04556 * 5 4 2 39 39 H 1.08997 * 109.47594 * 176.04575 * 5 4 2 40 40 H 1.09002 * 109.46517 * 69.99989 * 6 4 2 41 41 H 1.09002 * 109.47251 * 310.00500 * 6 4 2 42 42 H 0.96995 * 119.99907 * 0.02562 * 9 7 6 43 43 H 1.08998 * 110.41264 * 23.74179 * 12 10 9 44 44 H 1.08999 * 110.40920 * 146.18145 * 12 10 9 45 45 H 1.09001 * 109.47512 * 309.99902 * 14 13 12 46 46 H 1.09000 * 109.47060 * 70.00477 * 14 13 12 47 47 H 0.96997 * 119.99716 * 0.02562 * 17 15 14 48 48 H 0.96995 * 119.99795 * 179.97438 * 21 20 18 49 49 H 1.09000 * 110.41111 * 280.70631 * 26 13 12 50 50 H 1.08989 * 110.41482 * 158.25895 * 26 13 12 51 51 H 0.96701 * 113.99885 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4850 -0.6306 1.2817 6 6 1.5487 -2.0835 1.2334 7 6 1.8581 -2.6859 2.5797 8 8 2.4156 -2.0216 3.4276 9 7 1.5152 -3.9627 2.8415 10 6 1.8165 -4.5484 4.1501 11 1 1.7570 -3.7881 4.9288 12 6 3.2181 -5.1955 4.1382 13 7 2.9667 -6.6276 3.8333 14 6 4.0957 -7.4633 4.2631 15 6 3.9208 -8.8597 3.7240 16 8 2.9512 -9.1318 3.0479 17 7 4.8422 -9.8060 3.9924 18 6 4.6833 -11.0762 3.5016 19 1 3.8200 -11.3184 2.8996 20 6 5.6330 -12.0520 3.7787 21 7 6.6838 -11.7570 4.5108 22 14 5.4169 -13.7824 3.1093 23 1 6.0649 -13.8824 1.7770 24 1 6.0449 -14.7550 4.0394 25 1 3.9690 -14.0857 2.9795 26 6 1.7388 -6.9546 4.6030 27 6 0.8433 -5.7057 4.4559 28 1 0.1413 -5.8376 3.6325 29 8 0.1393 -5.4535 5.6736 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.9193 -1.1672 0.4381 38 1 3.8069 0.4105 1.2545 39 1 3.8164 -1.0891 2.2133 40 1 2.0520 -2.6565 0.4547 41 1 0.4723 -2.1069 1.0635 42 1 1.0697 -4.4941 2.1633 43 1 3.8382 -4.7449 3.3632 44 1 3.6927 -5.0922 5.1139 45 1 5.0259 -7.0410 3.8829 46 1 4.1298 -7.4958 5.3520 47 1 5.6178 -9.5883 4.5327 48 1 7.3465 -12.4383 4.7045 49 1 1.9820 -7.1266 5.6515 50 1 1.2452 -7.8285 4.1780 51 1 -0.4878 -6.1484 5.9165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199119276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:26 Heat of formation + Delta-G solvation = -93.924729 kcal Electronic energy + Delta-G solvation = -30465.976177 eV Core-core repulsion = 26208.089215 eV Total energy + Delta-G solvation = -4257.886962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42915 -39.29338 -38.08027 -37.58923 -35.82115 -34.41411 -33.81198 -32.42736 -31.29747 -30.47588 -29.22250 -28.13770 -26.90623 -26.11275 -24.79783 -24.15948 -21.69307 -21.08713 -20.43669 -20.16756 -19.21584 -17.95730 -17.71870 -17.31574 -16.70746 -16.11562 -15.99815 -15.41345 -15.28462 -15.13153 -14.85825 -14.71411 -14.37626 -14.08609 -14.06518 -13.77131 -13.35895 -13.18468 -13.05139 -12.87394 -12.60013 -12.58056 -12.50265 -12.20287 -12.13585 -12.02166 -11.75879 -11.61124 -11.51021 -11.36084 -11.29871 -11.02148 -10.97678 -10.78998 -10.41849 -10.24902 -10.19456 -9.81144 -9.51960 -9.20528 -8.59729 -8.56384 -8.09650 -7.97959 -6.43737 -3.84776 2.54101 2.79749 3.15702 3.24473 3.29734 3.66119 3.84017 3.89095 4.12735 4.28530 4.45321 4.53144 4.56521 4.62793 4.74271 4.94021 4.95369 4.97411 4.99892 5.12960 5.21829 5.27242 5.31206 5.34767 5.35923 5.40455 5.46201 5.47665 5.59661 5.64453 5.67468 5.77257 5.78473 5.81436 5.90105 5.93750 6.01202 6.14306 6.23187 6.39505 6.65006 6.79822 6.92698 7.07221 7.40921 7.47724 7.52776 8.03548 8.15590 8.59314 9.15736 9.52169 10.03718 10.73993 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.002011 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.746577 B =13918.238164 C =14645.250548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.147 4.147 4 N -0.519 5.519 5 C 0.014 3.986 6 C 0.030 3.970 7 C 0.517 3.483 8 O -0.523 6.523 9 N -0.717 5.717 10 C 0.152 3.848 11 H 0.108 0.892 12 C 0.023 3.977 13 N -0.479 5.479 14 C 0.034 3.966 15 C 0.446 3.554 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.006 3.994 27 C 0.095 3.905 28 H 0.073 0.927 29 O -0.562 6.562 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.403 0.597 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.052 0.948 50 H 0.102 0.898 51 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 21.162 -5.123 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 C -0.204 4.204 4 N -0.244 5.244 5 C -0.134 4.134 6 C -0.101 4.101 7 C 0.303 3.697 8 O -0.398 6.398 9 N -0.370 5.370 10 C 0.046 3.954 11 H 0.126 0.874 12 C -0.107 4.107 13 N -0.204 5.204 14 C -0.098 4.098 15 C 0.231 3.769 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.122 4.122 27 C 0.035 3.965 28 H 0.091 0.909 29 O -0.368 6.368 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.238 0.762 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.071 0.929 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.120 0.880 51 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.542 22.035 -5.071 24.948 hybrid contribution 0.544 -2.019 -0.151 2.097 sum -9.998 20.016 -5.222 22.976 Atomic orbital electron populations 1.21932 0.94259 1.01998 1.02462 1.21671 0.95797 0.95293 0.90574 1.21906 1.01254 0.94975 1.02294 1.61729 1.11492 1.12371 1.38837 1.22639 0.86252 1.02432 1.02076 1.22060 1.02977 0.90303 0.94723 1.20478 0.78530 0.81119 0.89611 1.90677 1.40874 1.60500 1.47716 1.45924 1.62086 1.12925 1.16048 1.21427 0.92936 0.95096 0.85912 0.87433 1.23578 0.96410 0.89761 1.00904 1.65133 1.02651 1.00868 1.51706 1.22081 0.94778 0.94455 0.98484 1.19670 0.85550 0.85748 0.85956 1.90495 1.31729 1.81558 1.42542 1.41866 1.21873 1.09434 1.46978 1.19681 1.08252 0.85141 1.29754 0.87942 1.25270 0.95329 1.00344 0.97065 1.69614 1.11194 1.35324 1.38139 0.85854 0.78648 0.81312 0.78439 1.20406 1.20936 1.19460 1.23897 0.92493 0.98549 0.97302 1.22754 0.93157 0.93518 0.87108 0.90877 1.86489 1.58944 1.49857 1.41489 0.92049 0.92550 0.91533 0.94153 0.92311 0.92161 0.91585 0.96139 0.90977 0.89259 0.91717 0.87480 0.76250 0.89527 0.92744 0.89197 0.92908 0.77497 0.91861 0.92933 0.87976 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.99 37.16 0.33 -0.62 16 2 C 0.07 0.56 2.68 -67.71 -0.18 0.38 16 3 C -0.15 -0.99 8.84 37.16 0.33 -0.66 16 4 N -0.52 -5.03 4.37 -236.33 -1.03 -6.06 16 5 C 0.01 0.13 8.84 60.06 0.53 0.67 16 6 C 0.03 0.27 5.26 -4.97 -0.03 0.24 16 7 C 0.52 6.00 7.55 -10.99 -0.08 5.92 16 8 O -0.52 -7.92 13.96 5.55 0.08 -7.84 16 9 N -0.72 -7.62 5.06 -52.46 -0.27 -7.89 16 10 C 0.15 1.89 3.22 -66.54 -0.21 1.67 16 11 H 0.11 1.52 7.40 -51.93 -0.38 1.13 16 12 C 0.02 0.31 6.17 -2.18 -0.01 0.30 16 13 N -0.48 -7.67 4.98 -231.42 -1.15 -8.82 16 14 C 0.03 0.60 5.32 -4.98 -0.03 0.57 16 15 C 0.45 10.32 7.63 -10.98 -0.08 10.23 16 16 O -0.58 -15.17 14.80 5.54 0.08 -15.09 16 17 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 22 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.01 0.09 5.66 -2.18 -0.01 0.08 16 27 C 0.09 1.11 4.18 -25.35 -0.11 1.01 16 28 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 29 O -0.56 -6.31 13.26 -35.23 -0.47 -6.78 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.33 6.20 -51.93 -0.32 0.01 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.39 6.26 -51.93 -0.32 0.07 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.64 6.01 -51.93 -0.31 0.32 16 39 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 40 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.11 0.76 5.83 -51.93 -0.30 0.45 16 42 H 0.40 3.50 8.36 -40.82 -0.34 3.16 16 43 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 44 H 0.05 0.72 8.00 -51.93 -0.42 0.31 16 45 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 46 H 0.05 0.86 7.77 -51.93 -0.40 0.46 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.05 0.77 7.69 -51.93 -0.40 0.37 16 50 H 0.10 1.70 7.24 -51.93 -0.38 1.32 16 51 H 0.38 2.74 9.12 45.56 0.42 3.16 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -33.74 405.05 -8.30 -42.04 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.50 Total: 14.48 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 0.21 Total: 11.90 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -1.78 Total: -60.66 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.31 Total: -29.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.74 -8.30 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199119276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.881 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds