Wall clock time and date at job start Wed Apr 1 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 120.00007 * 2 1 4 4 O 1.21589 * 119.99923 * 0.27185 * 3 2 1 5 5 N 1.34777 * 120.00028 * 180.27277 * 3 2 1 6 6 C 1.46503 * 119.99893 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47012 * 302.33511 * 6 5 3 8 8 C 1.52998 * 109.46835 * 62.33768 * 6 5 3 9 9 C 1.50694 * 109.47012 * 182.33613 * 6 5 3 10 10 O 1.21278 * 120.00215 * 228.78299 * 9 6 5 11 11 N 1.34780 * 120.00089 * 48.77579 * 9 6 5 12 12 C 1.47507 * 118.75547 * 5.76686 * 11 9 6 13 13 C 1.53202 * 111.23443 * 221.50652 * 12 11 9 14 14 C 1.51532 * 109.43436 * 40.25939 * 13 12 11 15 15 O 1.42152 * 108.76755 * 268.50775 * 14 13 12 16 16 C 1.38017 * 119.43640 * 87.21530 * 15 14 13 17 17 H 1.08996 * 109.47530 * 56.57661 * 16 15 14 18 18 C 1.53004 * 109.46665 * 176.57195 * 16 15 14 19 19 N 1.46494 * 109.46931 * 300.00982 * 18 16 15 20 20 C 1.36938 * 119.99686 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00558 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99563 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99622 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00130 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46939 * 90.00217 * 24 22 20 26 26 H 1.48502 * 109.46780 * 209.99471 * 24 22 20 27 27 H 1.48490 * 109.47434 * 329.99739 * 24 22 20 28 28 C 1.45119 * 118.75977 * 186.01913 * 11 9 6 29 29 H 1.08999 * 109.46921 * 179.72458 * 1 2 3 30 30 H 1.09004 * 109.46840 * 299.72658 * 1 2 3 31 31 H 1.08993 * 109.46813 * 59.72723 * 1 2 3 32 32 H 0.97000 * 119.99678 * 180.27246 * 2 1 3 33 33 H 0.97000 * 119.99713 * 359.97438 * 5 3 2 34 34 H 1.09007 * 109.46953 * 60.00354 * 7 6 5 35 35 H 1.09003 * 109.46720 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47206 * 300.00459 * 7 6 5 37 37 H 1.08997 * 109.47201 * 60.00183 * 8 6 5 38 38 H 1.09000 * 109.46846 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.47026 * 299.99676 * 8 6 5 40 40 H 1.09002 * 109.16506 * 342.01487 * 12 11 9 41 41 H 1.08997 * 109.17205 * 101.22574 * 12 11 9 42 42 H 1.09007 * 109.60888 * 280.22180 * 13 12 11 43 43 H 1.09002 * 109.44881 * 160.20130 * 13 12 11 44 44 H 1.09003 * 109.58985 * 148.72130 * 14 13 12 45 45 H 1.09004 * 109.58753 * 28.29128 * 14 13 12 46 46 H 1.08996 * 109.47290 * 60.01114 * 18 16 15 47 47 H 1.09000 * 109.46786 * 180.02562 * 18 16 15 48 48 H 0.96995 * 120.00542 * 359.97438 * 19 18 16 49 49 H 0.96998 * 120.00385 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.46565 * 210.72763 * 28 11 9 51 51 H 1.09003 * 109.46055 * 330.70092 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0050 5 7 3.4867 1.1672 -0.0056 6 6 4.2192 2.4360 -0.0061 7 6 3.8009 3.2658 -1.2217 8 6 3.8994 3.2100 1.2743 9 6 5.6995 2.1614 -0.0707 10 8 6.4530 2.7135 0.7028 11 7 6.1861 1.3020 -0.9879 12 6 5.2656 0.7446 -1.9968 13 6 5.5328 -0.7460 -2.2283 14 6 5.8219 -1.4185 -0.9015 15 8 7.2245 -1.3931 -0.6719 16 6 7.7909 -0.2968 -0.0537 17 1 7.3114 -0.1361 0.9119 18 6 9.2862 -0.5449 0.1547 19 7 9.4720 -1.7302 0.9954 20 6 10.7351 -2.1492 1.3185 21 1 11.5942 -1.6057 0.9539 22 6 10.9111 -3.2720 2.1156 23 7 12.1251 -3.6750 2.4257 24 14 9.4252 -4.2116 2.7468 25 1 9.0566 -5.2684 1.7707 26 1 9.7534 -4.8371 4.0530 27 1 8.2845 -3.2766 2.9184 28 6 7.5946 0.9557 -0.9422 29 1 -0.3633 -1.0277 -0.0049 30 1 -0.3633 0.5096 0.8925 31 1 -0.3633 0.5180 -0.8875 32 1 1.9500 -0.8401 -0.0040 33 1 3.9717 0.3272 -0.0092 34 1 2.7301 3.4645 -1.1749 35 1 4.3463 4.2096 -1.2223 36 1 4.0287 2.7143 -2.1338 37 1 4.1974 2.6188 2.1402 38 1 4.4440 4.1542 1.2737 39 1 2.8287 3.4086 1.3210 40 1 4.2387 0.8751 -1.6552 41 1 5.3995 1.2788 -2.9374 42 1 6.3905 -0.8655 -2.8903 43 1 4.6558 -1.2053 -2.6846 44 1 5.4752 -2.4514 -0.9320 45 1 5.3109 -0.8828 -0.1013 46 1 9.7659 -0.7055 -0.8108 47 1 9.7335 0.3206 0.6433 48 1 8.7005 -2.2181 1.3231 49 1 12.2482 -4.4598 2.9824 50 1 7.9497 0.7447 -1.9509 51 1 8.1601 1.7890 -0.5251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202141425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:47 Heat of formation + Delta-G solvation = -58.403956 kcal Electronic energy + Delta-G solvation = -32836.920739 eV Core-core repulsion = 28580.574073 eV Total energy + Delta-G solvation = -4256.346666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73528 -40.11982 -38.86972 -36.53264 -35.73417 -34.85611 -34.83168 -32.99927 -31.84498 -31.20194 -29.35027 -27.76391 -27.00220 -26.69970 -25.75855 -23.70207 -22.04421 -22.00216 -21.17736 -20.84957 -19.67973 -18.78553 -18.03362 -17.68586 -16.80570 -16.58563 -16.24149 -15.98436 -15.69469 -15.27751 -15.17146 -14.80350 -14.41559 -14.31841 -14.22564 -13.86973 -13.58202 -13.51957 -13.18622 -13.01179 -12.72281 -12.65691 -12.61632 -12.48981 -12.34391 -12.22786 -12.06499 -11.91268 -11.61020 -11.52801 -11.29098 -11.01986 -10.85009 -10.60525 -10.43151 -10.13108 -9.84724 -9.70206 -9.63735 -9.56144 -9.29487 -8.87892 -8.77256 -7.19154 -5.73299 -3.07967 1.87266 2.54285 2.59238 2.74681 3.40410 3.43908 3.47262 3.67530 3.71479 3.92045 4.38629 4.50402 4.59827 4.62090 4.63190 4.74331 4.77834 4.98018 5.00982 5.11859 5.12230 5.20690 5.26163 5.33626 5.38131 5.38813 5.42740 5.49278 5.56094 5.58500 5.66000 5.70858 5.77286 5.82663 5.85247 5.93726 5.99684 6.04074 6.11429 6.29678 6.36546 6.51682 6.62383 6.95693 7.48148 7.71417 7.80860 8.02554 8.13767 8.45638 9.25154 9.97480 10.18102 11.45223 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.003207 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.515168 B = 8728.332149 C = 9388.119887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.706 3.294 4 O -0.577 6.577 5 N -0.739 5.739 6 C 0.179 3.821 7 C -0.169 4.169 8 C -0.148 4.148 9 C 0.508 3.492 10 O -0.513 6.513 11 N -0.605 5.605 12 C 0.073 3.927 13 C -0.170 4.170 14 C 0.073 3.927 15 O -0.367 6.367 16 C 0.084 3.916 17 H 0.050 0.950 18 C 0.171 3.829 19 N -0.749 5.749 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.887 3.113 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.078 3.922 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.398 0.602 33 H 0.398 0.602 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.364 0.636 49 H 0.259 0.741 50 H 0.088 0.912 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.533 9.414 -11.376 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.406 5.406 3 C 0.406 3.594 4 O -0.455 6.455 5 N -0.400 5.400 6 C 0.089 3.911 7 C -0.227 4.227 8 C -0.207 4.207 9 C 0.294 3.706 10 O -0.386 6.386 11 N -0.338 5.338 12 C -0.050 4.050 13 C -0.208 4.208 14 C -0.004 4.004 15 O -0.285 6.285 16 C 0.024 3.976 17 H 0.068 0.932 18 C 0.043 3.957 19 N -0.395 5.395 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.718 3.282 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.046 4.046 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.236 0.764 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.197 0.803 49 H 0.069 0.931 50 H 0.106 0.894 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.323 10.557 -11.000 29.559 hybrid contribution -0.665 -1.455 0.452 1.663 sum -25.989 9.101 -10.548 29.488 Atomic orbital electron populations 1.21424 0.77739 1.02196 1.02410 1.44986 1.08008 1.07097 1.80475 1.15899 0.81272 0.84514 0.77668 1.90883 1.67680 1.29825 1.57078 1.45738 1.05179 1.09115 1.79998 1.20413 0.87003 0.84351 0.99301 1.22416 1.05280 0.99778 0.95255 1.22041 1.03674 1.00408 0.94542 1.20642 0.90046 0.79383 0.80538 1.90763 1.58953 1.48646 1.40264 1.47963 1.09996 1.44805 1.31066 1.22675 0.95322 0.94650 0.92317 1.22495 1.03938 0.94384 1.00013 1.22176 0.82943 1.00748 0.94487 1.86448 1.20687 1.42110 1.79300 1.22378 0.96424 0.85003 0.93816 0.93209 1.20595 0.88723 0.91192 0.95179 1.42533 1.05364 1.30881 1.60715 1.19062 0.84024 1.08521 1.25523 0.89162 1.24651 0.96003 0.98318 1.00217 1.69703 1.19387 1.27151 1.42108 0.86494 0.83198 0.80190 0.78337 1.21043 1.21851 1.20549 1.22474 0.80661 0.99355 1.02087 0.90536 0.92219 0.92195 0.76895 0.76446 0.88419 0.91027 0.91798 0.92077 0.90666 0.89702 0.87451 0.91209 0.89453 0.89500 0.88917 0.94500 0.94566 0.93821 0.80311 0.93100 0.89389 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.54 10.70 59.85 0.64 1.18 16 2 N -0.75 -4.63 5.72 -72.07 -0.41 -5.04 16 3 C 0.71 6.53 7.98 -86.92 -0.69 5.84 16 4 O -0.58 -7.05 12.55 5.29 0.07 -6.98 16 5 N -0.74 -6.41 3.06 -53.50 -0.16 -6.57 16 6 C 0.18 1.86 0.63 -132.97 -0.08 1.77 16 7 C -0.17 -1.54 8.05 37.16 0.30 -1.24 16 8 C -0.15 -1.69 7.80 37.16 0.29 -1.40 16 9 C 0.51 6.36 6.47 -10.99 -0.07 6.29 16 10 O -0.51 -8.32 15.38 5.56 0.09 -8.24 16 11 N -0.60 -6.58 2.15 -172.70 -0.37 -6.95 16 12 C 0.07 0.56 4.04 -3.39 -0.01 0.55 16 13 C -0.17 -1.27 5.78 -27.37 -0.16 -1.43 16 14 C 0.07 0.75 6.37 36.41 0.23 0.98 16 15 O -0.37 -5.60 9.18 -26.54 -0.24 -5.84 16 16 C 0.08 1.33 2.73 -25.77 -0.07 1.26 16 17 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 18 C 0.17 3.38 5.95 -4.04 -0.02 3.35 16 19 N -0.75 -18.47 5.29 -59.91 -0.32 -18.79 16 20 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 23 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 24 Si 0.89 22.68 27.74 -169.99 -4.71 17.97 16 25 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 28 C 0.08 1.00 4.92 -3.83 -0.02 0.98 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 1.51 8.84 -40.82 -0.36 1.15 16 33 H 0.40 3.08 5.00 -40.82 -0.20 2.88 16 34 H 0.10 0.99 6.00 -51.93 -0.31 0.68 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.50 5.64 -51.93 -0.29 0.20 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 39 H 0.08 0.99 6.34 -51.93 -0.33 0.66 16 40 H 0.11 0.75 3.38 -51.93 -0.18 0.57 16 41 H 0.07 0.48 7.88 -51.93 -0.41 0.07 16 42 H 0.09 0.77 8.01 -51.92 -0.42 0.35 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.35 5.33 -51.93 -0.28 0.08 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.36 8.90 5.39 -40.82 -0.22 8.68 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 50 H 0.09 1.02 8.12 -51.93 -0.42 0.59 16 51 H 0.10 1.38 7.20 -51.93 -0.37 1.00 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -36.65 386.07 -7.43 -44.07 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.02 Total: 8.67 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 0.07 Total: 10.97 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.49 Total: -66.45 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.09 Total: -21.06 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.65 -7.43 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202141425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.330 kcal (2) G-P(sol) polarization free energy of solvation -36.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds