Wall clock time and date at job start Wed Apr 1 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00500 * 2 1 4 4 H 1.09007 * 110.63906 * 31.68187 * 3 2 1 5 5 C 1.54322 * 110.72252 * 268.54821 * 3 2 1 6 6 N 1.47022 * 107.27047 * 219.44345 * 5 3 2 7 7 C 1.36936 * 125.64571 * 178.97253 * 6 5 3 8 8 H 1.08007 * 119.99852 * 174.66994 * 7 6 5 9 9 C 1.38811 * 120.00356 * 354.66725 * 7 6 5 10 10 N 1.31624 * 119.99922 * 7.84016 * 9 7 6 11 11 Si 1.86803 * 120.00288 * 187.84101 * 9 7 6 12 12 H 1.48497 * 109.47065 * 94.96408 * 11 9 7 13 13 H 1.48496 * 109.47164 * 214.96798 * 11 9 7 14 14 H 1.48496 * 109.46795 * 334.96991 * 11 9 7 15 15 C 1.47426 * 108.70428 * 358.93778 * 6 5 3 16 16 C 1.54903 * 104.82977 * 24.12883 * 15 6 5 17 17 H 1.09003 * 111.00739 * 81.06992 * 16 15 6 18 18 N 1.46504 * 111.00584 * 204.91743 * 16 15 6 19 19 C 1.34773 * 120.00094 * 267.20421 * 18 16 15 20 20 O 1.21284 * 119.99891 * 355.54611 * 19 18 16 21 21 C 1.50706 * 120.00130 * 175.55090 * 19 18 16 22 22 H 1.09000 * 109.46564 * 32.92383 * 21 19 18 23 23 N 1.46499 * 109.47104 * 152.92214 * 21 19 18 24 24 C 1.34774 * 120.00080 * 205.00135 * 23 21 19 25 25 N 1.34780 * 119.99948 * 180.02562 * 24 23 21 26 26 O 1.21590 * 119.99981 * 359.97438 * 24 23 21 27 27 C 1.53000 * 109.46875 * 272.92156 * 21 19 18 28 28 C 1.52999 * 109.47111 * 54.45674 * 27 21 19 29 29 C 1.53005 * 109.46904 * 174.45285 * 27 21 19 30 30 C 1.52996 * 109.47169 * 294.45482 * 27 21 19 31 31 H 1.09004 * 109.47018 * 60.00014 * 1 2 3 32 32 H 1.09002 * 109.47069 * 300.00714 * 1 2 3 33 33 H 1.08997 * 109.47610 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.88180 * 338.85785 * 5 3 2 35 35 H 1.09000 * 109.88639 * 99.86600 * 5 3 2 36 36 H 0.96998 * 119.99931 * 179.97438 * 10 9 7 37 37 H 1.09000 * 110.36414 * 142.97166 * 15 6 5 38 38 H 1.08999 * 110.35952 * 265.18241 * 15 6 5 39 39 H 0.97003 * 120.00088 * 87.18746 * 18 16 15 40 40 H 0.97002 * 120.00086 * 24.99965 * 23 21 19 41 41 H 0.97002 * 120.00218 * 359.97438 * 25 24 23 42 42 H 0.97000 * 119.99512 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47496 * 57.21438 * 28 27 21 44 44 H 1.08995 * 109.47141 * 177.22210 * 28 27 21 45 45 H 1.09007 * 109.46640 * 297.21905 * 28 27 21 46 46 H 1.08994 * 109.46820 * 59.99905 * 29 27 21 47 47 H 1.08995 * 109.46963 * 180.02562 * 29 27 21 48 48 H 1.09000 * 109.46677 * 300.00484 * 29 27 21 49 49 H 1.08996 * 109.47560 * 60.00260 * 30 27 21 50 50 H 1.09009 * 109.46929 * 180.02562 * 30 27 21 51 51 H 1.09003 * 109.47134 * 299.99768 * 30 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3736 2.0095 0.5358 5 6 2.2659 1.7893 -1.4429 6 7 3.5563 2.4937 -1.4449 7 6 4.1555 3.0586 -2.5391 8 1 5.0646 3.6299 -2.4221 9 6 3.5945 2.8970 -3.7984 10 7 2.4106 2.3358 -3.9244 11 14 4.5197 3.4759 -5.3145 12 1 5.2788 2.3393 -5.8951 13 1 3.5533 3.9899 -6.3179 14 1 5.4627 4.5585 -4.9353 15 6 4.0980 2.4920 -0.0738 16 6 3.4353 1.2717 0.6128 17 1 3.9515 0.3481 0.3510 18 7 3.3863 1.4495 2.0661 19 6 4.3813 0.9691 2.8378 20 8 5.2761 0.3199 2.3389 21 6 4.3821 1.2384 4.3206 22 1 3.3549 1.2790 4.6829 23 7 5.1016 0.1654 5.0114 24 6 4.8284 -0.1064 6.3029 25 7 5.4907 -1.0933 6.9385 26 8 3.9850 0.5392 6.8948 27 6 5.0734 2.5753 4.5956 28 6 4.4070 3.6743 3.7656 29 6 4.9529 2.9153 6.0826 30 6 6.5515 2.4733 4.2139 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5140 0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.3089 0.9348 -2.1183 35 1 1.4704 2.4670 -1.7531 36 1 2.0184 2.2231 -4.8044 37 1 5.1814 2.3738 -0.0942 38 1 3.8272 3.4131 0.4421 39 1 2.6377 1.9131 2.4731 40 1 5.7747 -0.3495 4.5393 41 1 6.1637 -1.6081 6.4665 42 1 5.2942 -1.2886 7.8681 43 1 3.3436 3.7138 4.0018 44 1 4.8668 4.6348 3.9983 45 1 4.5358 3.4573 2.7052 46 1 5.4276 2.1324 6.6739 47 1 5.4449 3.8680 6.2784 48 1 3.8998 2.9879 6.3544 49 1 6.6373 2.2311 3.1547 50 1 7.0440 3.4257 4.4103 51 1 7.0262 1.6904 4.8053 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213721122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:20 Heat of formation + Delta-G solvation = -84.105770 kcal Electronic energy + Delta-G solvation = -32395.802953 eV Core-core repulsion = 28138.341773 eV Total energy + Delta-G solvation = -4257.461180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.01798 -39.50558 -38.30341 -36.82115 -35.92578 -34.33057 -34.01230 -33.08454 -31.82486 -29.05920 -27.96790 -27.29577 -27.11075 -26.46952 -26.14065 -24.15602 -21.51732 -21.20242 -20.57553 -20.09253 -19.08065 -18.77635 -17.80887 -17.05027 -16.72357 -16.18029 -16.06661 -15.70765 -15.36289 -14.78354 -14.73065 -14.47399 -14.31410 -14.24240 -14.04296 -13.64047 -13.51896 -13.24800 -12.86528 -12.75118 -12.32137 -12.22428 -12.08899 -11.94633 -11.67280 -11.61970 -11.39373 -11.24062 -11.05052 -10.95915 -10.87381 -10.83205 -10.77027 -10.43815 -10.17400 -10.01945 -9.85990 -9.85365 -9.77655 -9.23103 -9.07014 -8.79265 -8.59255 -6.91976 -5.77961 -3.11499 2.43486 2.69592 3.00242 3.32620 3.39492 3.44799 3.46174 4.11490 4.26023 4.46252 4.57239 4.58124 4.75134 4.97372 5.10532 5.21373 5.36065 5.39023 5.45291 5.57374 5.59245 5.61753 5.64375 5.68151 5.77681 5.82640 5.85224 5.90534 5.92473 6.00719 6.01160 6.09601 6.11643 6.20472 6.28582 6.35509 6.45206 6.48838 6.55393 6.68835 6.79854 7.21701 7.44603 7.55685 7.69552 7.74957 7.83082 8.16183 8.24084 8.41741 9.13803 9.74455 10.37567 11.33870 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.003015 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.674569 B = 9284.275681 C =10216.855829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.055 3.945 4 H 0.063 0.937 5 C 0.163 3.837 6 N -0.599 5.599 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.004 4.004 10 N -0.919 5.919 11 Si 0.912 3.088 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.132 3.868 16 C 0.133 3.867 17 H 0.109 0.891 18 N -0.708 5.708 19 C 0.517 3.483 20 O -0.533 6.533 21 C 0.157 3.843 22 H 0.106 0.894 23 N -0.725 5.725 24 C 0.709 3.291 25 N -0.868 5.868 26 O -0.590 6.590 27 C -0.071 4.071 28 C -0.154 4.154 29 C -0.128 4.128 30 C -0.142 4.142 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.398 0.602 40 H 0.406 0.594 41 H 0.397 0.603 42 H 0.414 0.586 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -3.556 20.515 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.037 3.963 6 N -0.327 5.327 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.201 4.201 10 N -0.566 5.566 11 Si 0.742 3.258 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.028 3.972 17 H 0.127 0.873 18 N -0.359 5.359 19 C 0.302 3.698 20 O -0.410 6.410 21 C 0.047 3.953 22 H 0.124 0.876 23 N -0.382 5.382 24 C 0.407 3.593 25 N -0.436 5.436 26 O -0.468 6.468 27 C -0.073 4.073 28 C -0.211 4.211 29 C -0.185 4.185 30 C -0.199 4.199 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.233 0.767 40 H 0.243 0.757 41 H 0.225 0.775 42 H 0.246 0.754 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.168 -3.539 20.249 20.670 hybrid contribution 0.330 0.116 -0.747 0.825 sum 2.498 -3.423 19.502 19.958 Atomic orbital electron populations 1.22703 0.81647 1.02051 0.99860 1.87900 1.19180 1.27519 1.95075 1.23833 0.92633 0.84181 0.99721 0.91951 1.21600 0.88533 0.97013 0.89155 1.44234 1.19851 1.65776 1.02822 1.19058 1.06230 1.26434 0.84173 0.90122 1.24838 0.97015 1.00728 0.97527 1.69952 1.15343 1.48995 1.22294 0.86100 0.78808 0.78061 0.82816 1.21489 1.21765 1.20554 1.21829 0.97352 0.93563 0.86841 1.22420 0.96316 1.01338 0.77143 0.87347 1.45962 1.23879 1.58331 1.07688 1.20379 0.82187 0.78922 0.88327 1.90701 1.36264 1.39112 1.74907 1.20745 0.98190 0.87261 0.89061 0.87613 1.44768 1.44374 1.38287 1.10799 1.15827 0.81455 0.80583 0.81455 1.42964 1.45238 1.38681 1.16736 1.90978 1.36436 1.52956 1.66452 1.20868 0.96306 0.92817 0.97281 1.22059 1.00499 0.98087 1.00493 1.21865 1.02500 1.00696 0.93456 1.21866 0.94219 1.01583 1.02251 0.93529 0.94796 0.90272 0.91913 0.93509 0.93623 0.93238 0.95847 0.76734 0.75719 0.77487 0.75376 0.92251 0.91739 0.91348 0.92262 0.93289 0.92022 0.91766 0.92525 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.88 101.05 1.10 1.58 16 2 O -0.38 -6.87 10.43 -35.23 -0.37 -7.24 16 3 C 0.06 1.02 3.05 -24.90 -0.08 0.94 16 4 H 0.06 1.01 7.74 -51.93 -0.40 0.60 16 5 C 0.16 3.85 5.16 -3.06 -0.02 3.83 16 6 N -0.60 -14.97 3.39 -170.07 -0.58 -15.54 16 7 C -0.23 -6.34 10.26 -15.06 -0.15 -6.50 16 8 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 9 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 10 N -0.92 -26.52 10.37 55.49 0.58 -25.94 16 11 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.13 2.66 6.93 -2.53 -0.02 2.65 16 16 C 0.13 2.37 3.18 -65.78 -0.21 2.16 16 17 H 0.11 2.24 7.49 -51.93 -0.39 1.85 16 18 N -0.71 -9.74 3.99 -51.73 -0.21 -9.94 16 19 C 0.52 7.15 5.34 -10.98 -0.06 7.09 16 20 O -0.53 -8.96 14.96 5.55 0.08 -8.88 16 21 C 0.16 1.79 1.94 -69.08 -0.13 1.66 16 22 H 0.11 1.22 7.58 -51.93 -0.39 0.82 16 23 N -0.73 -7.51 4.02 -59.81 -0.24 -7.75 16 24 C 0.71 7.48 7.43 -86.92 -0.65 6.84 16 25 N -0.87 -5.61 8.88 27.64 0.25 -5.37 16 26 O -0.59 -8.14 14.31 5.29 0.08 -8.06 16 27 C -0.07 -0.75 0.62 -154.51 -0.10 -0.84 16 28 C -0.15 -1.57 7.64 37.16 0.28 -1.29 16 29 C -0.13 -1.36 7.09 37.16 0.26 -1.09 16 30 C -0.14 -1.54 8.04 37.16 0.30 -1.24 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.41 8.11 -51.93 -0.42 -0.02 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.70 7.23 -51.93 -0.38 1.33 16 35 H 0.05 1.20 7.60 -51.93 -0.39 0.81 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16 39 H 0.40 4.49 8.38 -40.82 -0.34 4.15 16 40 H 0.41 3.99 7.82 -40.82 -0.32 3.67 16 41 H 0.40 1.61 8.84 -40.82 -0.36 1.25 16 42 H 0.41 2.17 8.93 -40.82 -0.36 1.80 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 46 H 0.06 0.69 5.63 -51.93 -0.29 0.39 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 49 H 0.06 0.82 6.91 -51.93 -0.36 0.47 16 50 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 51 H 0.05 0.56 7.46 -51.93 -0.39 0.18 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -33.62 399.48 -7.44 -41.06 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.47 Total: 9.22 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 0.44 Total: 15.56 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.20 Total: -64.55 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.21 Total: -24.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.62 -7.44 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213721122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.043 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds