Wall clock time and date at job start Wed Apr 1 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00064 * 2 1 4 4 H 1.08997 * 110.64315 * 31.68277 * 3 2 1 5 5 C 1.54325 * 110.71927 * 268.54556 * 3 2 1 6 6 N 1.47026 * 107.27272 * 219.44526 * 5 3 2 7 7 C 1.36933 * 125.64731 * 178.97574 * 6 5 3 8 8 H 1.08000 * 119.99667 * 174.90151 * 7 6 5 9 9 C 1.38809 * 120.00237 * 354.89787 * 7 6 5 10 10 N 1.31621 * 120.00097 * 5.84996 * 9 7 6 11 11 Si 1.86797 * 120.00088 * 185.84430 * 9 7 6 12 12 H 1.48504 * 109.47245 * 94.99586 * 11 9 7 13 13 H 1.48503 * 109.47610 * 214.99498 * 11 9 7 14 14 H 1.48501 * 109.47287 * 334.99590 * 11 9 7 15 15 C 1.47425 * 108.69865 * 358.94177 * 6 5 3 16 16 C 1.54903 * 104.83656 * 24.12597 * 15 6 5 17 17 H 1.09007 * 111.00333 * 81.06405 * 16 15 6 18 18 N 1.46493 * 111.00700 * 204.91399 * 16 15 6 19 19 C 1.34773 * 120.00263 * 267.19989 * 18 16 15 20 20 O 1.21280 * 120.00187 * 355.18561 * 19 18 16 21 21 C 1.50704 * 120.00141 * 175.18714 * 19 18 16 22 22 H 1.09002 * 109.47294 * 327.50123 * 21 19 18 23 23 N 1.46496 * 109.47243 * 207.50370 * 21 19 18 24 24 C 1.34774 * 120.00322 * 154.99890 * 23 21 19 25 25 N 1.34780 * 120.00241 * 179.97438 * 24 23 21 26 26 O 1.21594 * 119.99969 * 0.02562 * 24 23 21 27 27 C 1.52998 * 109.47188 * 87.50086 * 21 19 18 28 28 C 1.52997 * 109.47006 * 64.96962 * 27 21 19 29 29 C 1.52994 * 109.47261 * 184.96982 * 27 21 19 30 30 C 1.53007 * 109.47155 * 304.97311 * 27 21 19 31 31 H 1.09006 * 109.46915 * 60.00215 * 1 2 3 32 32 H 1.08996 * 109.46994 * 300.00381 * 1 2 3 33 33 H 1.08994 * 109.47101 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.87989 * 338.86266 * 5 3 2 35 35 H 1.08998 * 109.88544 * 99.87040 * 5 3 2 36 36 H 0.96997 * 120.00299 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36601 * 142.97184 * 15 6 5 38 38 H 1.09000 * 110.36463 * 265.28438 * 15 6 5 39 39 H 0.97003 * 119.99786 * 87.19647 * 18 16 15 40 40 H 0.97003 * 119.99982 * 335.00027 * 23 21 19 41 41 H 0.96991 * 119.99755 * 0.02562 * 25 24 23 42 42 H 0.97002 * 119.99568 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47391 * 60.00018 * 28 27 21 44 44 H 1.09000 * 109.47333 * 180.02562 * 28 27 21 45 45 H 1.09000 * 109.47291 * 299.99707 * 28 27 21 46 46 H 1.09000 * 109.47094 * 59.99997 * 29 27 21 47 47 H 1.09000 * 109.47310 * 179.97438 * 29 27 21 48 48 H 1.08996 * 109.47354 * 300.00131 * 29 27 21 49 49 H 1.08997 * 109.47215 * 65.85018 * 30 27 21 50 50 H 1.08996 * 109.47038 * 185.85260 * 30 27 21 51 51 H 1.09000 * 109.46366 * 305.84749 * 30 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3736 2.0095 0.5357 5 6 2.2658 1.7893 -1.4430 6 7 3.5563 2.4938 -1.4451 7 6 4.1553 3.0587 -2.5392 8 1 5.0664 3.6268 -2.4228 9 6 3.5917 2.9010 -3.7979 10 7 2.4235 2.3085 -3.9263 11 14 4.4912 3.5299 -5.3095 12 1 5.2782 2.4244 -5.9128 13 1 3.5047 4.0326 -6.2991 14 1 5.4058 4.6325 -4.9183 15 6 4.0980 2.4921 -0.0739 16 6 3.4353 1.2719 0.6127 17 1 3.9515 0.3482 0.3509 18 7 3.3863 1.4496 2.0660 19 6 4.3814 0.9692 2.8376 20 8 5.2727 0.3144 2.3398 21 6 4.3867 1.2456 4.3191 22 1 3.9411 2.2222 4.5082 23 7 5.7658 1.2342 4.8131 24 6 6.0884 1.9212 5.9268 25 7 7.3571 1.9104 6.3816 26 8 5.2346 2.5501 6.5219 27 6 3.5771 0.1671 5.0419 28 6 4.2715 -1.1865 4.8796 29 6 3.4781 0.5144 6.5287 30 6 2.1721 0.0950 4.4403 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.3089 0.9348 -2.1183 35 1 1.4704 2.4669 -1.7531 36 1 2.0298 2.1980 -4.8059 37 1 5.1814 2.3740 -0.0942 38 1 3.8256 3.4124 0.4427 39 1 2.6377 1.9132 2.4730 40 1 6.4468 0.7323 4.3386 41 1 8.0380 1.4084 5.9071 42 1 7.5891 2.4045 7.1834 43 1 5.2724 -1.1351 5.3081 44 1 3.6945 -1.9549 5.3941 45 1 4.3420 -1.4339 3.8204 46 1 2.9834 1.4788 6.6443 47 1 2.9009 -0.2536 7.0436 48 1 4.4789 0.5658 6.9572 49 1 2.2358 -0.2532 3.4094 50 1 1.5634 -0.5980 5.0210 51 1 1.7164 1.0849 4.4620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213721123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:22 Heat of formation + Delta-G solvation = -84.250745 kcal Electronic energy + Delta-G solvation = -32364.008933 eV Core-core repulsion = 28106.541466 eV Total energy + Delta-G solvation = -4257.467467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01636 -39.49438 -38.30933 -36.85139 -35.90937 -34.32726 -34.00567 -33.08779 -31.82351 -29.05638 -28.00062 -27.33631 -27.07093 -26.52765 -26.14194 -24.15397 -21.51167 -21.19732 -20.56990 -20.09238 -19.10870 -18.76709 -17.81046 -17.04027 -16.68437 -16.21508 -16.11281 -15.70534 -15.26088 -14.86897 -14.73629 -14.48672 -14.30717 -14.24768 -14.07129 -13.69655 -13.44292 -13.22501 -12.92567 -12.75788 -12.37077 -12.25182 -12.09916 -11.93987 -11.73321 -11.60544 -11.39897 -11.25512 -11.04174 -11.00047 -10.90308 -10.84033 -10.77521 -10.42737 -10.16878 -10.02122 -9.85154 -9.84120 -9.79138 -9.19456 -9.12204 -8.78340 -8.59599 -6.91685 -5.77102 -3.11434 2.41449 2.72931 3.01956 3.31461 3.39521 3.44685 3.46172 4.11307 4.26761 4.46417 4.54520 4.56445 4.72668 4.93859 5.10808 5.19709 5.35293 5.37665 5.45839 5.52513 5.57097 5.60207 5.62183 5.68122 5.72413 5.80810 5.82480 5.85979 5.92333 5.96232 6.01547 6.05750 6.12309 6.17564 6.25406 6.33711 6.44673 6.49240 6.56033 6.70326 6.80300 7.21889 7.44737 7.55864 7.69364 7.76044 7.83757 8.16680 8.24107 8.43034 9.14330 9.74650 10.37806 11.34475 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003079 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.090820 B = 9091.995810 C =10485.960404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.162 3.838 6 N -0.599 5.599 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.109 0.891 18 N -0.709 5.709 19 C 0.517 3.483 20 O -0.533 6.533 21 C 0.157 3.843 22 H 0.107 0.893 23 N -0.725 5.725 24 C 0.709 3.291 25 N -0.868 5.868 26 O -0.590 6.590 27 C -0.072 4.072 28 C -0.141 4.141 29 C -0.128 4.128 30 C -0.152 4.152 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.398 0.602 40 H 0.406 0.594 41 H 0.397 0.603 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 -4.798 20.776 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.037 3.963 6 N -0.327 5.327 7 C -0.359 4.359 8 H 0.098 0.902 9 C -0.201 4.201 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.028 3.972 17 H 0.127 0.873 18 N -0.359 5.359 19 C 0.302 3.698 20 O -0.409 6.409 21 C 0.047 3.953 22 H 0.125 0.875 23 N -0.382 5.382 24 C 0.407 3.593 25 N -0.436 5.436 26 O -0.468 6.468 27 C -0.074 4.074 28 C -0.199 4.199 29 C -0.185 4.185 30 C -0.210 4.210 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.233 0.767 40 H 0.243 0.757 41 H 0.225 0.775 42 H 0.246 0.754 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.276 -4.920 20.537 21.157 hybrid contribution 0.553 0.526 -0.813 1.115 sum 1.829 -4.395 19.724 20.290 Atomic orbital electron populations 1.22701 0.81679 1.02030 0.99855 1.87903 1.19137 1.27465 1.95073 1.23822 0.92602 0.84181 0.99711 0.91987 1.21605 0.88435 0.97063 0.89201 1.44235 1.19880 1.65821 1.02773 1.19067 1.06137 1.26423 0.84261 0.90151 1.24835 0.97173 1.00615 0.97513 1.69943 1.16386 1.48055 1.22293 0.86084 0.78652 0.78175 0.82760 1.21488 1.21732 1.20576 1.21829 0.97373 0.93630 0.86858 1.22409 0.96323 1.01317 0.77146 0.87285 1.45974 1.24058 1.58271 1.07627 1.20377 0.82184 0.79145 0.88081 1.90700 1.36666 1.38636 1.74944 1.20754 0.82934 1.01477 0.90159 0.87473 1.44755 1.10801 1.54380 1.28274 1.15821 0.83046 0.79650 0.80770 1.42960 1.09122 1.58046 1.33463 1.90979 1.48083 1.48092 1.59668 1.20879 0.95124 0.94874 0.96509 1.21862 1.00099 0.95287 1.02624 1.21865 1.02319 1.01124 0.93207 1.22031 0.94967 1.02279 1.01736 0.93565 0.94796 0.90273 0.91715 0.93658 0.93629 0.93238 0.95936 0.76731 0.75712 0.77475 0.75359 0.92633 0.92608 0.91818 0.91947 0.93347 0.92250 0.91454 0.91770 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.88 101.05 1.10 1.57 16 2 O -0.38 -6.69 10.43 -35.23 -0.37 -7.06 16 3 C 0.06 1.02 3.05 -24.90 -0.08 0.94 16 4 H 0.06 1.00 7.74 -51.93 -0.40 0.59 16 5 C 0.16 3.86 5.16 -3.06 -0.02 3.84 16 6 N -0.60 -15.14 3.39 -170.07 -0.58 -15.72 16 7 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 10 N -0.92 -26.61 10.35 55.49 0.57 -26.04 16 11 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 16 C 0.13 2.39 3.18 -65.79 -0.21 2.18 16 17 H 0.11 2.24 7.48 -51.93 -0.39 1.85 16 18 N -0.71 -9.79 4.24 -51.74 -0.22 -10.01 16 19 C 0.52 7.17 5.34 -10.99 -0.06 7.11 16 20 O -0.53 -8.96 14.93 5.56 0.08 -8.88 16 21 C 0.16 1.78 1.94 -69.08 -0.13 1.65 16 22 H 0.11 1.25 7.58 -51.93 -0.39 0.86 16 23 N -0.72 -7.60 4.03 -59.81 -0.24 -7.84 16 24 C 0.71 7.62 7.40 -86.92 -0.64 6.97 16 25 N -0.87 -5.81 8.88 27.64 0.25 -5.56 16 26 O -0.59 -8.25 14.31 5.28 0.08 -8.18 16 27 C -0.07 -0.74 0.62 -154.51 -0.10 -0.83 16 28 C -0.14 -1.47 8.03 37.16 0.30 -1.17 16 29 C -0.13 -1.32 7.07 37.15 0.26 -1.06 16 30 C -0.15 -1.45 7.36 37.16 0.27 -1.17 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.76 7.18 -51.93 -0.37 1.39 16 35 H 0.05 1.17 7.63 -51.93 -0.40 0.77 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 4.51 7.94 -40.82 -0.32 4.19 16 40 H 0.41 4.04 7.83 -40.82 -0.32 3.72 16 41 H 0.40 1.70 8.84 -40.82 -0.36 1.34 16 42 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 43 H 0.05 0.55 7.47 -51.93 -0.39 0.17 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.79 6.87 -51.93 -0.36 0.43 16 46 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.68 5.64 -51.93 -0.29 0.38 16 49 H 0.07 0.74 6.79 -51.93 -0.35 0.39 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.49 8.01 -51.93 -0.42 0.08 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -33.73 399.19 -7.47 -41.19 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.46 Total: 9.18 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 0.43 Total: 15.94 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.22 Total: -65.17 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.21 Total: -24.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.73 -7.47 -41.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213721123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.060 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds