Wall clock time and date at job start Wed Apr 1 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00064 * 2 1 4 4 H 1.08997 * 110.64315 * 31.68277 * 3 2 1 5 5 C 1.54325 * 110.71927 * 268.54556 * 3 2 1 6 6 N 1.47026 * 107.27272 * 219.44526 * 5 3 2 7 7 C 1.36933 * 125.64731 * 178.97574 * 6 5 3 8 8 H 1.08000 * 119.99667 * 174.90151 * 7 6 5 9 9 C 1.38809 * 120.00237 * 354.89787 * 7 6 5 10 10 N 1.31621 * 120.00097 * 5.84996 * 9 7 6 11 11 Si 1.86797 * 120.00088 * 185.84430 * 9 7 6 12 12 H 1.48504 * 109.47245 * 94.99586 * 11 9 7 13 13 H 1.48503 * 109.47610 * 214.99498 * 11 9 7 14 14 H 1.48501 * 109.47287 * 334.99590 * 11 9 7 15 15 C 1.47425 * 108.69865 * 358.94177 * 6 5 3 16 16 C 1.54903 * 104.83656 * 24.12597 * 15 6 5 17 17 H 1.09007 * 111.00333 * 81.06405 * 16 15 6 18 18 N 1.46493 * 111.00700 * 204.91399 * 16 15 6 19 19 C 1.34773 * 120.00263 * 267.19989 * 18 16 15 20 20 O 1.21280 * 120.00187 * 355.18561 * 19 18 16 21 21 C 1.50704 * 120.00141 * 175.18714 * 19 18 16 22 22 H 1.09002 * 109.47294 * 327.50123 * 21 19 18 23 23 N 1.46496 * 109.47243 * 207.50370 * 21 19 18 24 24 C 1.34774 * 120.00322 * 154.99890 * 23 21 19 25 25 N 1.34780 * 120.00241 * 179.97438 * 24 23 21 26 26 O 1.21594 * 119.99969 * 0.02562 * 24 23 21 27 27 C 1.52998 * 109.47188 * 87.50086 * 21 19 18 28 28 C 1.52997 * 109.47006 * 64.96962 * 27 21 19 29 29 C 1.52994 * 109.47261 * 184.96982 * 27 21 19 30 30 C 1.53007 * 109.47155 * 304.97311 * 27 21 19 31 31 H 1.09006 * 109.46915 * 60.00215 * 1 2 3 32 32 H 1.08996 * 109.46994 * 300.00381 * 1 2 3 33 33 H 1.08994 * 109.47101 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.87989 * 338.86266 * 5 3 2 35 35 H 1.08998 * 109.88544 * 99.87040 * 5 3 2 36 36 H 0.96997 * 120.00299 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36601 * 142.97184 * 15 6 5 38 38 H 1.09000 * 110.36463 * 265.28438 * 15 6 5 39 39 H 0.97003 * 119.99786 * 87.19647 * 18 16 15 40 40 H 0.97003 * 119.99982 * 335.00027 * 23 21 19 41 41 H 0.96991 * 119.99755 * 0.02562 * 25 24 23 42 42 H 0.97002 * 119.99568 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47391 * 60.00018 * 28 27 21 44 44 H 1.09000 * 109.47333 * 180.02562 * 28 27 21 45 45 H 1.09000 * 109.47291 * 299.99707 * 28 27 21 46 46 H 1.09000 * 109.47094 * 59.99997 * 29 27 21 47 47 H 1.09000 * 109.47310 * 179.97438 * 29 27 21 48 48 H 1.08996 * 109.47354 * 300.00131 * 29 27 21 49 49 H 1.08997 * 109.47215 * 65.85018 * 30 27 21 50 50 H 1.08996 * 109.47038 * 185.85260 * 30 27 21 51 51 H 1.09000 * 109.46366 * 305.84749 * 30 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3736 2.0095 0.5357 5 6 2.2658 1.7893 -1.4430 6 7 3.5563 2.4938 -1.4451 7 6 4.1553 3.0587 -2.5392 8 1 5.0664 3.6268 -2.4228 9 6 3.5917 2.9010 -3.7979 10 7 2.4235 2.3085 -3.9263 11 14 4.4912 3.5299 -5.3095 12 1 5.2782 2.4244 -5.9128 13 1 3.5047 4.0326 -6.2991 14 1 5.4058 4.6325 -4.9183 15 6 4.0980 2.4921 -0.0739 16 6 3.4353 1.2719 0.6127 17 1 3.9515 0.3482 0.3509 18 7 3.3863 1.4496 2.0660 19 6 4.3814 0.9692 2.8376 20 8 5.2727 0.3144 2.3398 21 6 4.3867 1.2456 4.3191 22 1 3.9411 2.2222 4.5082 23 7 5.7658 1.2342 4.8131 24 6 6.0884 1.9212 5.9268 25 7 7.3571 1.9104 6.3816 26 8 5.2346 2.5501 6.5219 27 6 3.5771 0.1671 5.0419 28 6 4.2715 -1.1865 4.8796 29 6 3.4781 0.5144 6.5287 30 6 2.1721 0.0950 4.4403 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.3089 0.9348 -2.1183 35 1 1.4704 2.4669 -1.7531 36 1 2.0298 2.1980 -4.8059 37 1 5.1814 2.3740 -0.0942 38 1 3.8256 3.4124 0.4427 39 1 2.6377 1.9132 2.4730 40 1 6.4468 0.7323 4.3386 41 1 8.0380 1.4084 5.9071 42 1 7.5891 2.4045 7.1834 43 1 5.2724 -1.1351 5.3081 44 1 3.6945 -1.9549 5.3941 45 1 4.3420 -1.4339 3.8204 46 1 2.9834 1.4788 6.6443 47 1 2.9009 -0.2536 7.0436 48 1 4.4789 0.5658 6.9572 49 1 2.2358 -0.2532 3.4094 50 1 1.5634 -0.5980 5.0210 51 1 1.7164 1.0849 4.4620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213721123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:21 Heat of formation + Delta-G solvation = -112.021212 kcal Electronic energy + Delta-G solvation = -32365.213151 eV Core-core repulsion = 28106.541466 eV Total energy + Delta-G solvation = -4258.671685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01551 -40.63961 -39.66638 -37.83208 -37.43706 -35.72574 -34.95550 -33.85360 -33.68553 -30.72159 -29.38701 -28.15748 -28.04901 -27.74958 -27.48422 -25.90163 -22.70255 -22.22870 -22.13347 -21.62477 -20.02684 -19.65494 -19.09092 -18.45125 -18.00469 -17.31357 -17.18310 -17.08797 -16.60156 -16.09876 -15.85021 -15.75344 -15.69630 -15.34199 -15.12182 -15.03972 -14.68598 -14.43799 -14.38278 -13.99989 -13.79176 -13.62643 -13.17835 -13.03722 -12.98934 -12.92043 -12.78387 -12.59072 -12.52911 -12.31023 -12.25251 -12.06087 -11.89067 -11.87131 -11.70329 -11.60421 -11.34067 -10.96482 -10.76231 -10.57998 -10.56468 -10.15048 -9.94288 -8.96394 -7.88748 -5.25781 1.37779 1.45875 1.48132 1.56503 1.69776 2.15725 2.28673 2.46820 2.77918 3.30731 3.44384 3.52758 3.62571 3.71921 3.84339 3.90536 3.94288 4.09192 4.12755 4.34784 4.38904 4.45329 4.52144 4.61247 4.66987 4.77596 4.81424 4.82507 4.89941 4.93117 4.96370 5.04064 5.05674 5.16145 5.27016 5.32157 5.33636 5.36901 5.44565 5.46458 5.52896 5.66266 5.85380 6.08551 6.13494 6.32375 6.43525 7.03452 7.04351 7.11496 7.67078 7.69685 8.32283 9.20951 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003079 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.090820 B = 9091.995810 C =10485.960404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.076 3.924 4 H 0.094 0.906 5 C 0.172 3.828 6 N -0.621 5.621 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.060 4.060 10 N -0.946 5.946 11 Si 0.978 3.022 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.267 1.267 15 C 0.130 3.870 16 C 0.154 3.846 17 H 0.081 0.919 18 N -0.696 5.696 19 C 0.521 3.479 20 O -0.563 6.563 21 C 0.164 3.836 22 H 0.110 0.890 23 N -0.723 5.723 24 C 0.706 3.294 25 N -0.850 5.850 26 O -0.623 6.623 27 C -0.067 4.067 28 C -0.137 4.137 29 C -0.118 4.118 30 C -0.151 4.151 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.249 0.751 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.414 0.586 40 H 0.409 0.591 41 H 0.411 0.589 42 H 0.422 0.578 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.047 0.953 49 H 0.051 0.949 50 H 0.076 0.924 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -4.598 22.885 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.017 3.983 4 H 0.112 0.888 5 C 0.046 3.954 6 N -0.349 5.349 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.253 4.253 10 N -0.595 5.595 11 Si 0.806 3.194 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.004 3.996 16 C 0.048 3.952 17 H 0.099 0.901 18 N -0.348 5.348 19 C 0.307 3.693 20 O -0.441 6.441 21 C 0.054 3.946 22 H 0.128 0.872 23 N -0.381 5.381 24 C 0.404 3.596 25 N -0.419 5.419 26 O -0.503 6.503 27 C -0.069 4.069 28 C -0.194 4.194 29 C -0.176 4.176 30 C -0.209 4.209 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.252 0.748 40 H 0.246 0.754 41 H 0.241 0.759 42 H 0.256 0.744 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.270 -4.719 22.701 23.221 hybrid contribution 0.597 0.427 -1.426 1.604 sum 1.867 -4.292 21.275 21.784 Atomic orbital electron populations 1.22965 0.79442 1.03824 1.00683 1.87889 1.21612 1.26842 1.94942 1.23481 0.93423 0.85237 0.96155 0.88780 1.21335 0.87221 0.94658 0.92166 1.44493 1.20691 1.65652 1.04016 1.19439 1.06299 1.26421 0.85476 0.89870 1.25666 0.97999 1.01390 1.00283 1.70158 1.17637 1.49289 1.22369 0.85066 0.77495 0.77788 0.79011 1.21583 1.21825 1.19139 1.21945 0.96857 0.95542 0.85285 1.21802 0.95423 0.98643 0.79361 0.90052 1.45718 1.24904 1.58493 1.05690 1.20820 0.81294 0.78123 0.89024 1.90695 1.37800 1.39874 1.75702 1.20697 0.83823 1.02046 0.88035 0.87235 1.44709 1.10555 1.54453 1.28346 1.15959 0.83786 0.79322 0.80543 1.42799 1.08081 1.57519 1.33475 1.90958 1.49347 1.49475 1.60567 1.20868 0.95424 0.94146 0.96492 1.21815 1.00580 0.95777 1.01257 1.21752 1.01753 1.01133 0.92915 1.22032 0.94590 1.03440 1.00860 0.94930 0.91662 0.88143 0.96140 0.96401 0.94210 0.94340 0.94139 0.74799 0.75365 0.75884 0.74403 0.92436 0.91394 0.93984 0.92691 0.92009 0.93374 0.92950 0.90532 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.88 113.37 1.23 1.92 16 2 O -0.39 -13.70 10.43 -148.98 -1.55 -15.25 16 3 C 0.08 2.74 3.05 31.78 0.10 2.84 16 4 H 0.09 2.80 7.74 -2.39 -0.02 2.78 16 5 C 0.17 8.44 5.16 86.73 0.45 8.89 16 6 N -0.62 -32.10 3.39 -691.99 -2.35 -34.45 16 7 C -0.25 -14.00 10.27 84.03 0.86 -13.14 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.41 5.48 84.86 0.47 -2.95 16 10 N -0.95 -56.66 10.35 21.65 0.22 -56.44 16 11 Si 0.98 45.88 29.56 68.60 2.03 47.90 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.13 5.41 6.93 86.85 0.60 6.01 16 16 C 0.15 5.49 3.18 46.38 0.15 5.63 16 17 H 0.08 3.41 7.48 -2.38 -0.02 3.39 16 18 N -0.70 -18.19 4.24 -435.98 -1.85 -20.03 16 19 C 0.52 13.86 5.34 87.66 0.47 14.33 16 20 O -0.56 -18.76 14.93 -3.03 -0.05 -18.81 16 21 C 0.16 3.47 1.94 44.25 0.09 3.56 16 22 H 0.11 2.33 7.58 -2.39 -0.02 2.32 16 23 N -0.72 -14.16 4.03 -461.41 -1.86 -16.02 16 24 C 0.71 14.04 7.40 179.05 1.33 15.37 16 25 N -0.85 -9.77 8.88 -184.74 -1.64 -11.41 16 26 O -0.62 -16.50 14.31 -4.01 -0.06 -16.56 16 27 C -0.07 -1.24 0.62 -52.18 -0.03 -1.27 16 28 C -0.14 -2.63 8.03 71.98 0.58 -2.06 16 29 C -0.12 -2.18 7.07 71.98 0.51 -1.67 16 30 C -0.15 -2.48 7.36 71.98 0.53 -1.95 16 31 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 1.29 8.11 -2.39 -0.02 1.27 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.02 1.17 7.18 -2.38 -0.02 1.15 16 35 H 0.02 0.96 7.63 -2.39 -0.02 0.94 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.41 8.29 7.94 -92.71 -0.74 7.55 16 40 H 0.41 7.65 7.83 -92.71 -0.73 6.92 16 41 H 0.41 2.68 8.84 -92.72 -0.82 1.86 16 42 H 0.42 3.80 8.93 -92.71 -0.83 2.97 16 43 H 0.06 1.06 7.47 -2.39 -0.02 1.04 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.04 1.00 6.87 -2.39 -0.02 0.98 16 46 H 0.05 1.11 7.84 -2.39 -0.02 1.09 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 1.00 5.64 -2.39 -0.01 0.99 16 49 H 0.05 1.03 6.79 -2.39 -0.02 1.02 16 50 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.07 0.99 8.01 -2.39 -0.02 0.97 16 Total: -1.00 -75.65 399.19 -1.91 -77.56 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -2.13 Total: 27.97 kcal Atomic # 6 Polarization: 28.21 SS G_CDS: 7.32 Total: 35.53 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -7.47 Total: -138.35 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.66 Total: -50.62 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.65 -1.91 -77.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213721123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.459 kcal (2) G-P(sol) polarization free energy of solvation -75.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds