Wall clock time and date at job start Wed Apr 1 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47197 * 2 1 4 4 C 1.52999 * 109.47532 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47047 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47166 * 304.99465 * 5 4 3 7 7 N 1.46503 * 109.47214 * 64.99915 * 5 4 3 8 8 C 1.34775 * 119.99984 * 59.99631 * 7 5 4 9 9 N 1.34776 * 119.99816 * 179.97438 * 8 7 5 10 10 O 1.21587 * 120.00008 * 0.02562 * 8 7 5 11 11 C 1.50703 * 109.46786 * 184.99679 * 5 4 3 12 12 O 1.21283 * 120.00017 * 259.99457 * 11 5 4 13 13 N 1.34776 * 119.99775 * 80.00501 * 11 5 4 14 14 C 1.46505 * 119.99632 * 179.97438 * 13 11 5 15 15 H 1.08998 * 110.63964 * 31.85865 * 14 13 11 16 16 C 1.54316 * 110.87287 * 268.60516 * 14 13 11 17 17 N 1.47026 * 107.27333 * 219.37395 * 16 14 13 18 18 C 1.36935 * 125.65117 * 178.97713 * 17 16 14 19 19 H 1.08002 * 119.99865 * 349.95269 * 18 17 16 20 20 C 1.38810 * 120.00104 * 169.95423 * 18 17 16 21 21 N 1.31618 * 120.00103 * 350.42009 * 20 18 17 22 22 Si 1.86801 * 120.00009 * 170.41366 * 20 18 17 23 23 H 1.48494 * 109.47069 * 94.13967 * 22 20 18 24 24 H 1.48497 * 109.46932 * 214.14596 * 22 20 18 25 25 H 1.48505 * 109.47073 * 334.14168 * 22 20 18 26 26 C 1.47525 * 108.71351 * 358.94684 * 17 16 14 27 27 C 1.54909 * 104.78593 * 24.11494 * 26 17 16 28 28 H 1.09000 * 111.00414 * 81.08740 * 27 26 17 29 29 O 1.42898 * 111.00788 * 204.90291 * 27 26 17 30 30 C 1.42899 * 113.99996 * 265.41884 * 29 27 26 31 31 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47401 * 299.99645 * 1 2 3 33 33 H 1.09000 * 109.47496 * 60.00147 * 1 2 3 34 34 H 1.09003 * 109.47401 * 240.00355 * 2 1 3 35 35 H 1.09000 * 109.47496 * 119.99853 * 2 1 3 36 36 H 1.09006 * 109.47103 * 59.99669 * 3 2 1 37 37 H 1.09006 * 109.47168 * 300.00417 * 3 2 1 38 38 H 1.08995 * 109.47208 * 59.99963 * 4 3 2 39 39 H 1.09002 * 109.46593 * 299.99582 * 4 3 2 40 40 H 0.97000 * 119.99742 * 239.99426 * 7 5 4 41 41 H 0.96997 * 120.00348 * 0.02562 * 9 8 7 42 42 H 0.97007 * 119.99511 * 180.02562 * 9 8 7 43 43 H 0.96992 * 120.00342 * 359.97438 * 13 11 5 44 44 H 1.08999 * 109.88390 * 338.79455 * 16 14 13 45 45 H 1.08998 * 109.88322 * 99.95935 * 16 14 13 46 46 H 0.96996 * 120.00024 * 179.97438 * 21 20 18 47 47 H 1.09003 * 110.36978 * 265.30556 * 26 17 16 48 48 H 1.08999 * 110.41560 * 142.95429 * 26 17 16 49 49 H 1.09007 * 109.46993 * 180.02562 * 30 29 27 50 50 H 1.08994 * 109.47316 * 299.99633 * 30 29 27 51 51 H 1.08998 * 109.47217 * 60.00356 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8431 7 7 3.6927 3.5405 1.2505 8 6 4.1177 3.0454 2.4298 9 7 3.7620 3.6487 3.5813 10 8 4.8228 2.0552 2.4548 11 6 5.5817 2.8869 -0.1257 12 8 6.2717 3.0403 0.8599 13 7 6.1581 2.7182 -1.3322 14 6 7.6182 2.7205 -1.4532 15 1 8.0790 2.3145 -0.5527 16 6 8.1437 4.1424 -1.7419 17 7 9.2368 4.0143 -2.7169 18 6 9.9567 5.0502 -3.2496 19 1 9.6377 6.0692 -3.0872 20 6 11.0964 4.7906 -3.9983 21 7 11.5925 3.5723 -4.0408 22 14 11.9258 6.1705 -4.9456 23 1 13.0108 6.7564 -4.1182 24 1 12.4995 5.6312 -6.2047 25 1 10.9263 7.2207 -5.2670 26 6 9.4302 2.5848 -3.0258 27 6 8.0664 1.9232 -2.7066 28 1 7.3637 2.0602 -3.5285 29 8 8.2286 0.5368 -2.4007 30 6 8.0404 -0.3312 -3.5202 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6765 1.9564 -0.8900 38 1 3.9329 0.9290 -0.8908 39 1 3.9336 0.9287 0.8892 40 1 3.1306 4.3307 1.2305 41 1 3.1999 4.4389 3.5614 42 1 4.0682 3.2925 4.4301 43 1 5.6064 2.5953 -2.1204 44 1 7.3448 4.7553 -2.1592 45 1 8.5179 4.5931 -0.8227 46 1 12.3887 3.3909 -4.5643 47 1 10.2132 2.1630 -2.3956 48 1 9.6782 2.4536 -4.0791 49 1 8.1801 -1.3655 -3.2055 50 1 7.0315 -0.2045 -3.9127 51 1 8.7656 -0.0861 -4.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213975370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:24 Heat of formation + Delta-G solvation = -120.942476 kcal Electronic energy + Delta-G solvation = -31587.812178 eV Core-core repulsion = 27328.753638 eV Total energy + Delta-G solvation = -4259.058540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65387 -40.44840 -39.29708 -37.53636 -37.10239 -35.54840 -35.13838 -34.37701 -33.66820 -31.41977 -30.54141 -29.10585 -27.64529 -27.40022 -25.91524 -23.79680 -22.95162 -22.38978 -21.91834 -21.53881 -20.86929 -19.54773 -19.11719 -18.36401 -17.99539 -17.58574 -17.18377 -16.70600 -16.42719 -15.98567 -15.89821 -15.78508 -15.53242 -15.46773 -15.16334 -15.06316 -14.85563 -14.58161 -14.22872 -14.01338 -13.88379 -13.74300 -13.47050 -13.09860 -12.98947 -12.75303 -12.68854 -12.61628 -12.35613 -12.15635 -12.06261 -11.98749 -11.88317 -11.73575 -11.63751 -11.41797 -11.23288 -10.79948 -10.77255 -10.58735 -10.43948 -10.06040 -9.79228 -8.95770 -7.90926 -5.29788 1.46374 1.48204 1.58163 1.66891 1.87885 2.24414 2.44804 2.52149 2.74746 3.28626 3.58584 3.63799 3.72444 3.82392 3.96528 3.98088 4.06137 4.06381 4.21177 4.29487 4.37536 4.45989 4.47239 4.59347 4.60085 4.64048 4.84110 4.87056 4.87280 4.92087 4.97548 5.05098 5.08500 5.27200 5.27740 5.36998 5.39130 5.43526 5.51531 5.55026 5.58179 5.59692 6.01020 6.10721 6.14116 6.30597 6.63819 7.00609 7.24354 7.38524 7.66759 7.89567 8.32446 9.20264 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.002759 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.711803 B =10147.198512 C =11206.171366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.101 4.101 4 C -0.129 4.129 5 C 0.163 3.837 6 H 0.159 0.841 7 N -0.719 5.719 8 C 0.700 3.300 9 N -0.855 5.855 10 O -0.619 6.619 11 C 0.491 3.509 12 O -0.558 6.558 13 N -0.703 5.703 14 C 0.156 3.844 15 H 0.064 0.936 16 C 0.135 3.865 17 N -0.617 5.617 18 C -0.248 4.248 19 H 0.084 0.916 20 C -0.062 4.062 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.264 1.264 26 C 0.169 3.831 27 C 0.078 3.922 28 H 0.099 0.901 29 O -0.399 6.399 30 C 0.027 3.973 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.419 0.581 41 H 0.411 0.589 42 H 0.415 0.585 43 H 0.416 0.584 44 H 0.052 0.948 45 H 0.006 0.994 46 H 0.250 0.750 47 H -0.007 1.007 48 H 0.050 0.950 49 H 0.100 0.900 50 H 0.066 0.934 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.784 -2.825 5.042 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.139 4.139 4 C -0.168 4.168 5 C 0.053 3.947 6 H 0.176 0.824 7 N -0.377 5.377 8 C 0.398 3.602 9 N -0.425 5.425 10 O -0.497 6.497 11 C 0.276 3.724 12 O -0.434 6.434 13 N -0.356 5.356 14 C 0.049 3.951 15 H 0.083 0.917 16 C 0.008 3.992 17 N -0.345 5.345 18 C -0.377 4.377 19 H 0.102 0.898 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.188 1.188 26 C 0.043 3.957 27 C 0.018 3.982 28 H 0.116 0.884 29 O -0.318 6.318 30 C -0.069 4.069 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.256 0.744 41 H 0.242 0.758 42 H 0.247 0.753 43 H 0.253 0.747 44 H 0.070 0.930 45 H 0.024 0.976 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.069 0.931 49 H 0.118 0.882 50 H 0.084 0.916 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -26.529 -3.583 5.696 27.369 hybrid contribution 0.942 0.991 -0.311 1.402 sum -25.587 -2.591 5.384 26.276 Atomic orbital electron populations 1.21739 0.94856 1.01783 1.02186 1.21525 0.96581 0.96990 1.01441 1.21487 0.92285 0.97024 1.03073 1.21932 0.97703 0.93760 1.03366 1.20849 0.88357 0.97163 0.88351 0.82412 1.44518 1.56227 1.33796 1.03175 1.16210 0.79219 0.82866 0.81931 1.42787 1.58353 1.34576 1.06773 1.90958 1.42390 1.29654 1.86729 1.21872 0.92630 0.75474 0.82376 1.90760 1.65870 1.48628 1.38125 1.45710 1.05483 1.74191 1.10259 1.21472 0.81570 0.94307 0.97704 0.91744 1.21656 0.91006 0.95010 0.91494 1.44600 1.38827 1.02825 1.48261 1.19430 1.04543 0.87421 1.26265 0.89837 1.25757 0.97754 0.99422 1.02604 1.70168 1.23738 1.20914 1.44846 0.85009 0.78204 0.78217 0.77506 1.21673 1.21587 1.18792 1.21524 0.92195 0.83207 0.98754 1.23606 0.97417 0.81164 0.95979 0.88378 1.87877 1.92315 1.15827 1.35734 1.22987 1.00802 0.94423 0.88700 0.92858 0.92864 0.91646 0.91718 0.93982 0.92067 0.89340 0.90011 0.92720 0.74382 0.75819 0.75307 0.74693 0.93049 0.97620 0.94050 0.98871 0.93148 0.88187 0.91581 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.13 -1.73 5.93 30.59 0.18 -1.54 16 3 C -0.10 -1.23 5.10 30.60 0.16 -1.08 16 4 C -0.13 -2.40 4.54 30.59 0.14 -2.26 16 5 C 0.16 3.01 3.01 44.24 0.13 3.14 16 6 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 7 N -0.72 -12.44 4.66 -461.40 -2.15 -14.59 16 8 C 0.70 17.55 7.59 179.06 1.36 18.91 16 9 N -0.86 -13.38 8.88 -184.75 -1.64 -15.02 16 10 O -0.62 -23.11 13.03 18.47 0.24 -22.87 16 11 C 0.49 15.01 6.82 87.66 0.60 15.61 16 12 O -0.56 -23.77 13.32 19.43 0.26 -23.51 16 13 N -0.70 -20.15 5.11 -436.91 -2.23 -22.38 16 14 C 0.16 6.17 3.05 46.18 0.14 6.31 16 15 H 0.06 3.07 7.55 -2.39 -0.02 3.05 16 16 C 0.13 6.06 7.00 86.73 0.61 6.66 16 17 N -0.62 -32.94 3.40 -691.74 -2.35 -35.29 16 18 C -0.25 -14.13 10.24 84.03 0.86 -13.27 16 19 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 20 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 21 N -0.95 -57.80 10.68 21.65 0.23 -57.56 16 22 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 C 0.17 8.69 5.16 86.84 0.45 9.13 16 27 C 0.08 3.01 3.14 31.99 0.10 3.11 16 28 H 0.10 3.17 7.73 -2.39 -0.02 3.15 16 29 O -0.40 -15.00 10.51 -148.98 -1.57 -16.57 16 30 C 0.03 0.73 10.87 113.37 1.23 1.96 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.77 7.75 -2.38 -0.02 0.75 16 37 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.54 6.04 -2.39 -0.01 1.53 16 40 H 0.42 3.58 8.84 -92.71 -0.82 2.76 16 41 H 0.41 3.02 8.84 -92.71 -0.82 2.20 16 42 H 0.42 6.35 8.93 -92.70 -0.83 5.53 16 43 H 0.42 8.28 8.56 -92.71 -0.79 7.49 16 44 H 0.05 2.08 8.03 -2.39 -0.02 2.06 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 47 H -0.01 -0.40 8.07 -2.39 -0.02 -0.42 16 48 H 0.05 2.78 6.94 -2.39 -0.02 2.77 16 49 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 50 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 51 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -90.37 409.37 -2.35 -92.71 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -2.29 Total: 24.65 kcal Atomic # 6 Polarization: 35.64 SS G_CDS: 7.13 Total: 42.77 kcal Atomic # 7 Polarization: -136.70 SS G_CDS: -8.14 Total: -144.84 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -1.07 Total: -62.95 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -90.37 -2.35 -92.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213975370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.228 kcal (2) G-P(sol) polarization free energy of solvation -90.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds