Wall clock time and date at job start Wed Apr 1 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 C 1.52999 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47280 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47275 * 55.00587 * 5 4 3 7 7 N 1.46500 * 109.47341 * 295.00007 * 5 4 3 8 8 C 1.34775 * 120.00229 * 300.00147 * 7 5 4 9 9 N 1.34775 * 120.00516 * 179.97438 * 8 7 5 10 10 O 1.21593 * 119.99861 * 359.97438 * 8 7 5 11 11 C 1.50700 * 109.47321 * 174.99889 * 5 4 3 12 12 O 1.21280 * 119.99883 * 100.00075 * 11 5 4 13 13 N 1.34773 * 120.00375 * 280.00726 * 11 5 4 14 14 C 1.46500 * 120.00200 * 180.02562 * 13 11 5 15 15 H 1.09002 * 110.88857 * 34.29247 * 14 13 11 16 16 C 1.54915 * 111.03417 * 270.38731 * 14 13 11 17 17 N 1.47418 * 104.83107 * 204.89999 * 16 14 13 18 18 C 1.36939 * 125.64960 * 204.07747 * 17 16 14 19 19 H 1.08001 * 119.99891 * 0.04058 * 18 17 16 20 20 C 1.38809 * 120.00452 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99639 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00533 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47193 * 89.99782 * 22 20 18 24 24 H 1.48496 * 109.47198 * 210.00144 * 22 20 18 25 25 H 1.48500 * 109.46476 * 329.99773 * 22 20 18 26 26 C 1.47029 * 108.70495 * 24.13113 * 17 16 14 27 27 C 1.54327 * 107.26790 * 358.93814 * 26 17 16 28 28 H 1.09001 * 110.71543 * 96.16961 * 27 26 17 29 29 O 1.42897 * 110.86707 * 219.37089 * 27 26 17 30 30 C 1.42898 * 114.00394 * 263.61202 * 29 27 26 31 31 H 1.09001 * 109.46821 * 299.99731 * 1 2 3 32 32 H 1.08996 * 109.47382 * 59.99435 * 1 2 3 33 33 H 1.09003 * 109.47488 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46665 * 239.99782 * 2 1 3 35 35 H 1.09008 * 109.47188 * 120.00242 * 2 1 3 36 36 H 1.09001 * 109.46974 * 60.00362 * 3 2 1 37 37 H 1.08996 * 109.47374 * 300.00569 * 3 2 1 38 38 H 1.09001 * 109.46821 * 60.00269 * 4 3 2 39 39 H 1.09008 * 109.47188 * 300.00242 * 4 3 2 40 40 H 0.97006 * 119.99905 * 120.00113 * 7 5 4 41 41 H 0.97003 * 119.99202 * 359.97438 * 9 8 7 42 42 H 0.96994 * 120.00318 * 179.97438 * 9 8 7 43 43 H 0.97001 * 119.99748 * 359.97438 * 13 11 5 44 44 H 1.08995 * 110.36257 * 323.74273 * 16 14 13 45 45 H 1.08997 * 110.36405 * 86.05992 * 16 14 13 46 46 H 0.97001 * 119.99838 * 179.97438 * 21 20 18 47 47 H 1.08993 * 109.88066 * 239.51797 * 26 17 16 48 48 H 1.09003 * 109.87770 * 118.35455 * 26 17 16 49 49 H 1.08992 * 109.47183 * 59.99958 * 30 29 27 50 50 H 1.08997 * 109.47704 * 180.02562 * 30 29 27 51 51 H 1.09006 * 109.46718 * 300.00612 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6452 3.4244 0.8414 7 7 3.6930 3.5392 -1.2523 8 6 4.1180 3.0431 -2.4312 9 7 3.7616 3.6447 -3.5834 10 8 4.8230 2.0527 -2.4553 11 6 5.5819 2.8868 0.1245 12 8 6.2719 3.0392 -0.8612 13 7 6.1583 2.7190 1.3311 14 6 7.6183 2.7214 1.4522 15 1 8.0664 3.4115 0.7373 16 6 8.1929 1.2930 1.2801 17 7 9.4798 1.3148 1.9990 18 6 10.5418 0.4841 1.7597 19 1 10.4763 -0.2670 0.9864 20 6 11.7026 0.6076 2.5107 21 7 11.7823 1.5229 3.4532 22 14 13.1516 -0.5251 2.1838 23 1 14.0407 0.0898 1.1658 24 1 13.9107 -0.7337 3.4429 25 1 12.6550 -1.8319 1.6829 26 6 9.4337 2.3754 3.0162 27 6 8.0556 3.0605 2.9017 28 1 7.3553 2.6411 3.6239 29 8 8.1737 4.4738 3.0766 30 6 7.9010 4.9198 4.4065 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.9337 0.9285 -0.8892 39 1 3.9330 0.9287 0.8909 40 1 3.1309 4.3295 -1.2331 41 1 3.1988 4.4345 -3.5641 42 1 4.0677 3.2878 -4.4317 43 1 5.6065 2.5974 2.1195 44 1 7.5221 0.5583 1.7252 45 1 8.3516 1.0726 0.2246 46 1 12.5934 1.6090 3.9783 47 1 10.2253 3.1014 2.8309 48 1 9.5507 1.9417 4.0094 49 1 8.6010 4.4506 5.0978 50 1 8.0115 6.0030 4.4565 51 1 6.8819 4.6458 4.6797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213975371.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:27 Heat of formation + Delta-G solvation = -120.344921 kcal Electronic energy + Delta-G solvation = -31617.154408 eV Core-core repulsion = 27358.121780 eV Total energy + Delta-G solvation = -4259.032628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64417 -40.44177 -39.29987 -37.51352 -37.10146 -35.55046 -35.13775 -34.37555 -33.66381 -31.41472 -30.52776 -29.09253 -27.63397 -27.37619 -25.92854 -23.78576 -22.99425 -22.22589 -21.96406 -21.63969 -20.84966 -19.55288 -19.15289 -18.35295 -17.97821 -17.55130 -17.19141 -16.67477 -16.42432 -15.99742 -15.88921 -15.80423 -15.55839 -15.34502 -15.15379 -15.01714 -14.90948 -14.60637 -14.23640 -13.99942 -13.87597 -13.62006 -13.46427 -13.17216 -12.99536 -12.77108 -12.72054 -12.58037 -12.29479 -12.15357 -12.08368 -11.98254 -11.88208 -11.73661 -11.63081 -11.41727 -11.22822 -10.79954 -10.78677 -10.59856 -10.42199 -10.02288 -9.82270 -8.98383 -7.89520 -5.27657 1.43062 1.46229 1.54718 1.68027 1.87259 2.25127 2.44565 2.52766 2.78770 3.29158 3.53835 3.62441 3.73023 3.89561 3.93346 3.93637 4.04971 4.12457 4.21338 4.30094 4.37890 4.46395 4.48739 4.59607 4.62622 4.67917 4.81860 4.87007 4.90424 4.92365 5.00375 5.05216 5.08464 5.28035 5.33602 5.36118 5.37160 5.43813 5.51398 5.55246 5.58606 5.64198 6.01754 6.12087 6.14133 6.33627 6.65284 7.03431 7.25204 7.40252 7.67661 7.90428 8.30463 9.19851 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.002822 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.896243 B = 9920.488973 C =10274.883465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.100 4.100 4 C -0.131 4.131 5 C 0.165 3.835 6 H 0.161 0.839 7 N -0.718 5.718 8 C 0.699 3.301 9 N -0.855 5.855 10 O -0.619 6.619 11 C 0.490 3.510 12 O -0.558 6.558 13 N -0.702 5.702 14 C 0.156 3.844 15 H 0.065 0.935 16 C 0.133 3.867 17 N -0.622 5.622 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.288 1.288 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.174 3.826 27 C 0.081 3.919 28 H 0.101 0.899 29 O -0.398 6.398 30 C 0.026 3.974 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.419 0.581 41 H 0.411 0.589 42 H 0.415 0.585 43 H 0.416 0.584 44 H 0.041 0.959 45 H 0.021 0.979 46 H 0.250 0.750 47 H 0.015 0.985 48 H 0.024 0.976 49 H 0.033 0.967 50 H 0.100 0.900 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.753 7.717 -2.463 29.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.137 4.137 4 C -0.170 4.170 5 C 0.055 3.945 6 H 0.178 0.822 7 N -0.376 5.376 8 C 0.397 3.603 9 N -0.425 5.425 10 O -0.497 6.497 11 C 0.275 3.725 12 O -0.434 6.434 13 N -0.356 5.356 14 C 0.048 3.952 15 H 0.083 0.917 16 C 0.006 3.994 17 N -0.350 5.350 18 C -0.378 4.378 19 H 0.096 0.904 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.215 1.215 24 H -0.212 1.212 25 H -0.194 1.194 26 C 0.049 3.951 27 C 0.021 3.979 28 H 0.119 0.881 29 O -0.316 6.316 30 C -0.070 4.070 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.257 0.743 41 H 0.242 0.758 42 H 0.247 0.753 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.043 0.957 49 H 0.052 0.948 50 H 0.118 0.882 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.460 7.109 -3.104 28.535 hybrid contribution 1.085 -0.298 -0.138 1.134 sum -26.375 6.811 -3.242 27.433 Atomic orbital electron populations 1.21736 0.94774 1.01755 1.02246 1.21535 0.96658 0.97127 1.01357 1.21474 0.92208 0.96898 1.03155 1.21957 0.97794 0.93942 1.03348 1.20832 0.88300 0.97036 0.88369 0.82175 1.44502 1.56229 1.33790 1.03123 1.16232 0.79244 0.82871 0.81980 1.42783 1.58310 1.34648 1.06747 1.90975 1.42386 1.29651 1.86727 1.21885 0.92638 0.75514 0.82414 1.90769 1.65909 1.48656 1.38044 1.45658 1.05446 1.74230 1.10267 1.21679 0.81227 0.95944 0.96313 0.91673 1.21887 0.87411 0.95114 0.94980 1.44531 1.12117 1.38730 1.39584 1.19428 0.92230 1.10728 1.15453 0.90438 1.25671 1.00622 1.00795 0.98312 1.70160 1.27795 1.36761 1.24872 0.85040 0.78814 0.78450 0.76786 1.21502 1.21245 1.19381 1.21307 0.92872 0.89310 0.91657 1.23452 0.97010 0.81887 0.95524 0.88112 1.87896 1.91341 1.21163 1.31229 1.23008 1.00452 1.01158 0.82396 0.91540 0.92788 0.92968 0.94126 0.91838 0.89153 0.92001 0.92853 0.90042 0.74334 0.75797 0.75348 0.74645 0.94115 0.96007 0.94099 0.96637 0.95747 0.94786 0.88161 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.13 -1.85 5.93 30.59 0.18 -1.67 16 3 C -0.10 -1.24 5.10 30.59 0.16 -1.08 16 4 C -0.13 -2.51 4.54 30.59 0.14 -2.37 16 5 C 0.16 2.99 3.01 44.24 0.13 3.12 16 6 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 7 N -0.72 -12.19 4.66 -461.41 -2.15 -14.33 16 8 C 0.70 17.64 7.59 179.06 1.36 19.00 16 9 N -0.86 -13.44 8.88 -184.74 -1.64 -15.08 16 10 O -0.62 -23.54 13.03 18.45 0.24 -23.30 16 11 C 0.49 14.91 6.82 87.66 0.60 15.51 16 12 O -0.56 -23.92 13.37 19.43 0.26 -23.66 16 13 N -0.70 -19.81 5.22 -435.96 -2.27 -22.08 16 14 C 0.16 6.15 3.09 46.38 0.14 6.29 16 15 H 0.07 3.10 7.63 -2.39 -0.02 3.08 16 16 C 0.13 6.21 6.93 86.86 0.60 6.81 16 17 N -0.62 -34.50 3.39 -691.98 -2.35 -36.85 16 18 C -0.25 -15.02 10.28 84.03 0.86 -14.15 16 19 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 20 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 21 N -0.95 -58.49 10.31 21.65 0.22 -58.27 16 22 Si 0.98 47.82 29.55 68.60 2.03 49.84 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 26 C 0.17 8.98 5.15 86.73 0.45 9.43 16 27 C 0.08 3.04 3.07 31.78 0.10 3.14 16 28 H 0.10 3.05 7.68 -2.39 -0.02 3.03 16 29 O -0.40 -14.32 10.44 -148.98 -1.56 -15.88 16 30 C 0.03 0.65 10.85 113.37 1.23 1.88 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.78 7.75 -2.39 -0.02 0.76 16 38 H 0.05 1.55 6.04 -2.39 -0.01 1.53 16 39 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.42 3.31 8.84 -92.70 -0.82 2.49 16 41 H 0.41 2.93 8.84 -92.71 -0.82 2.11 16 42 H 0.41 6.48 8.93 -92.71 -0.83 5.65 16 43 H 0.42 7.86 8.54 -92.71 -0.79 7.07 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.02 0.92 7.30 -2.39 -0.02 0.91 16 48 H 0.02 1.35 7.50 -2.39 -0.02 1.33 16 49 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.07 1.28 8.11 -2.38 -0.02 1.26 16 Total: -1.00 -93.17 408.96 -2.38 -95.55 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -2.29 Total: 22.20 kcal Atomic # 6 Polarization: 34.73 SS G_CDS: 7.13 Total: 41.85 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -8.19 Total: -146.61 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -1.05 Total: -62.84 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -93.17 -2.38 -95.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213975371.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.799 kcal (2) G-P(sol) polarization free energy of solvation -93.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds