Wall clock time and date at job start Wed Apr 1 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47288 * 2 1 4 4 C 1.52995 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47061 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47181 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46892 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47432 * 55.00200 * 7 6 5 9 9 F 1.39901 * 109.47128 * 294.99721 * 7 6 5 10 10 C 1.50704 * 109.46644 * 174.99841 * 7 6 5 11 11 O 1.21281 * 120.00158 * 45.00598 * 10 7 6 12 12 N 1.34774 * 120.00156 * 224.99740 * 10 7 6 13 13 C 1.44972 * 117.33554 * 357.22236 * 12 10 7 14 14 C 1.51962 * 111.93241 * 203.78040 * 13 12 10 15 15 O 1.41319 * 111.60614 * 319.68390 * 14 13 12 16 16 C 1.40652 * 118.31740 * 56.94181 * 15 14 13 17 17 H 1.09001 * 108.83807 * 188.22348 * 16 15 14 18 18 C 1.53914 * 110.41750 * 67.97932 * 16 15 14 19 19 N 1.46773 * 107.69976 * 221.46084 * 18 16 15 20 20 C 1.36928 * 125.36644 * 178.78261 * 19 18 16 21 21 H 1.07998 * 120.00744 * 179.97438 * 20 19 18 22 22 C 1.38824 * 119.99794 * 359.97330 * 20 19 18 23 23 N 1.31615 * 119.99918 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99865 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47061 * 90.00252 * 24 22 20 26 26 H 1.48503 * 109.46897 * 210.00088 * 24 22 20 27 27 H 1.48502 * 109.47161 * 329.99580 * 24 22 20 28 28 C 1.46875 * 109.27182 * 358.75667 * 19 18 16 29 29 C 1.44545 * 117.34123 * 177.24384 * 12 10 7 30 30 H 1.08996 * 109.63873 * 285.94695 * 29 12 10 31 31 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47230 * 299.99686 * 1 2 3 33 33 H 1.08989 * 109.47463 * 59.99934 * 1 2 3 34 34 H 1.09001 * 109.47289 * 240.00036 * 2 1 3 35 35 H 1.09005 * 109.47753 * 120.00036 * 2 1 3 36 36 H 1.09001 * 109.46927 * 59.99814 * 3 2 1 37 37 H 1.09002 * 109.47151 * 300.00324 * 3 2 1 38 38 H 1.08995 * 109.47525 * 60.00311 * 4 3 2 39 39 H 1.08999 * 109.47366 * 299.99399 * 4 3 2 40 40 H 1.09000 * 109.47370 * 59.99925 * 5 4 3 41 41 H 1.09002 * 109.47282 * 299.99873 * 5 4 3 42 42 H 1.09000 * 109.46974 * 59.99751 * 6 5 4 43 43 H 1.09002 * 109.46966 * 300.00136 * 6 5 4 44 44 H 1.08996 * 108.98990 * 324.41737 * 13 12 10 45 45 H 1.09004 * 108.98565 * 83.23394 * 13 12 10 46 46 H 1.08996 * 109.05460 * 80.23758 * 14 13 12 47 47 H 1.08999 * 109.04985 * 199.14005 * 14 13 12 48 48 H 1.09001 * 109.82463 * 101.89185 * 18 16 15 49 49 H 1.08996 * 109.82101 * 341.02886 * 18 16 15 50 50 H 0.97002 * 120.00098 * 179.97438 * 23 22 20 51 51 H 1.09008 * 110.06453 * 137.03158 * 28 19 18 52 52 H 1.08993 * 110.07103 * 258.49614 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6100 2.8851 -0.0013 7 6 6.1199 4.3276 -0.0026 8 1 5.6853 4.8674 0.8387 9 9 5.7498 4.9520 -1.1986 10 6 7.6218 4.3295 0.1213 11 8 8.2863 3.5657 -0.5465 12 7 8.2266 5.1800 0.9741 13 6 7.3820 6.1098 1.6979 14 6 8.1495 7.3417 2.1477 15 8 9.4422 7.0089 2.6117 16 6 10.3052 6.3170 1.7430 17 1 11.1930 6.0128 2.2974 18 6 10.7178 7.2184 0.5656 19 7 10.6898 6.4011 -0.6532 20 6 10.9730 6.8504 -1.9153 21 1 10.9259 6.1711 -2.7537 22 6 11.3205 8.1792 -2.1174 23 7 11.3773 9.0072 -1.0959 24 14 11.7060 8.7922 -3.8393 25 1 10.4591 9.2792 -4.4821 26 1 12.6887 9.9028 -3.7608 27 1 12.2768 7.6822 -4.6438 28 6 10.3109 5.0253 -0.3058 29 6 9.6645 5.0912 1.0921 30 1 9.9310 4.2006 1.6613 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.9329 0.9289 -0.8908 39 1 3.9337 0.9286 0.8891 40 1 3.7170 3.3992 0.8887 41 1 3.7162 3.3986 -0.8913 42 1 5.9733 2.3708 -0.8910 43 1 5.9733 2.3716 0.8889 44 1 6.5608 6.4197 1.0517 45 1 6.9729 5.6083 2.5750 46 1 8.2392 8.0313 1.3084 47 1 7.5982 7.8307 2.9509 48 1 11.7244 7.6031 0.7297 49 1 10.0163 8.0472 0.4711 50 1 11.6205 9.9355 -1.2370 51 1 9.5944 4.6401 -1.0314 52 1 11.1954 4.3889 -0.2801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218976066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:08 Heat of formation + Delta-G solvation = -102.567492 kcal Electronic energy + Delta-G solvation = -31637.899742 eV Core-core repulsion = 27359.718039 eV Total energy + Delta-G solvation = -4278.181702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -47.84498 -40.79864 -38.47510 -36.91957 -35.92118 -34.98260 -34.21626 -32.43970 -30.71287 -30.03924 -28.14110 -27.80540 -26.46347 -24.65719 -23.67687 -23.17146 -21.47126 -21.33175 -20.74132 -19.94328 -18.64105 -17.86303 -17.20983 -16.65342 -16.54149 -15.98568 -15.95415 -15.49951 -15.06622 -14.73712 -14.69419 -14.50835 -14.39622 -14.16459 -13.94827 -13.56472 -13.42697 -13.09738 -12.90808 -12.70131 -12.45683 -12.33117 -12.11477 -12.00417 -11.88319 -11.67805 -11.47019 -11.26524 -11.11107 -11.08757 -10.97739 -10.90295 -10.75480 -10.70783 -10.64698 -10.62094 -10.39789 -10.08292 -9.71641 -9.39323 -8.89249 -8.58120 -8.31501 -6.79091 -5.69753 -3.02816 2.48450 2.88299 3.42363 3.47285 3.49518 4.01315 4.14356 4.27044 4.47337 4.51476 4.53381 4.59548 4.72545 4.76299 4.80912 4.97373 5.02177 5.05542 5.08607 5.18879 5.27510 5.31269 5.37604 5.40749 5.51140 5.52788 5.54496 5.60644 5.62585 5.66303 5.70003 5.74719 5.81288 5.82253 5.88265 5.95231 5.97853 6.03308 6.08659 6.11846 6.25001 6.44669 6.78503 7.11070 7.31554 7.41732 7.52790 7.73315 7.87323 8.15823 8.27741 9.23955 9.84048 10.46999 11.41727 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.002578 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.080481 B =10859.664850 C =11813.990197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.078 3.922 8 H 0.100 0.900 9 F -0.188 7.188 10 C 0.486 3.514 11 O -0.505 6.505 12 N -0.577 5.577 13 C 0.073 3.927 14 C 0.058 3.942 15 O -0.369 6.369 16 C 0.069 3.931 17 H 0.111 0.889 18 C 0.152 3.848 19 N -0.601 5.601 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.925 5.925 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.109 3.891 29 C 0.108 3.892 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.252 0.748 51 H 0.085 0.915 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.247 -12.366 9.297 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.173 4.173 7 C 0.039 3.961 8 H 0.117 0.883 9 F -0.169 7.169 10 C 0.271 3.729 11 O -0.380 6.380 12 N -0.310 5.310 13 C -0.051 4.051 14 C -0.019 4.019 15 O -0.286 6.286 16 C 0.010 3.990 17 H 0.129 0.871 18 C 0.027 3.973 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.573 5.573 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.017 4.017 29 C 0.004 3.996 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.123 0.877 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.103 0.897 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.733 -12.476 9.032 23.488 hybrid contribution 0.130 0.534 -1.176 1.298 sum -17.603 -11.942 7.855 22.675 Atomic orbital electron populations 1.21782 0.96006 1.01499 1.01794 1.21545 0.95762 0.97064 1.02014 1.21628 0.95381 0.96680 1.02136 1.21583 0.95315 0.96416 1.02346 1.21604 0.93928 0.97497 1.02747 1.22056 0.96505 0.93701 1.05033 1.21766 0.92536 0.96076 0.85731 0.88256 1.92902 1.91986 1.83909 1.48064 1.20952 0.90159 0.81551 0.80226 1.90633 1.65104 1.39525 1.42722 1.46656 1.07041 1.34848 1.42457 1.21772 0.94218 0.92431 0.96664 1.22217 0.83971 0.94652 1.01104 1.86849 1.23925 1.75861 1.41978 1.23002 0.91492 0.90971 0.93575 0.87096 1.21679 1.01141 0.91907 0.82606 1.44228 1.81033 1.03927 1.03705 1.19065 1.38931 0.93587 0.83379 0.90381 1.24796 1.02044 0.96130 0.97653 1.69945 1.54867 1.04297 1.28200 0.86093 0.77691 0.78288 0.83593 1.21653 1.21683 1.20655 1.22083 0.97208 0.88623 0.93738 1.21803 0.78833 0.99075 0.99898 0.90841 0.92897 0.92810 0.92755 0.92039 0.92104 0.92026 0.91927 0.91732 0.91904 0.91712 0.91126 0.89354 0.89917 0.89932 0.91379 0.91801 0.87747 0.92999 0.92606 0.93791 0.89741 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.13 -0.80 5.93 -26.74 -0.16 -0.96 16 3 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 4 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 5 C -0.12 -1.01 5.13 -26.73 -0.14 -1.15 16 6 C -0.13 -1.42 4.69 -26.73 -0.13 -1.55 16 7 C 0.08 1.00 2.98 -27.88 -0.08 0.92 16 8 H 0.10 0.96 5.90 -51.93 -0.31 0.65 16 9 F -0.19 -2.94 16.75 2.25 0.04 -2.90 16 10 C 0.49 8.17 6.49 -10.99 -0.07 8.10 16 11 O -0.50 -10.10 13.48 5.56 0.07 -10.02 16 12 N -0.58 -9.59 3.09 -168.74 -0.52 -10.11 16 13 C 0.07 0.94 5.40 -5.39 -0.03 0.91 16 14 C 0.06 0.84 6.72 36.63 0.25 1.09 16 15 O -0.37 -6.44 10.24 -34.15 -0.35 -6.79 16 16 C 0.07 1.31 3.83 -26.33 -0.10 1.21 16 17 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 18 C 0.15 3.72 5.02 -3.42 -0.02 3.70 16 19 N -0.60 -15.92 3.39 -171.44 -0.58 -16.50 16 20 C -0.22 -6.42 10.25 -15.06 -0.15 -6.58 16 21 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 22 C -0.01 -0.31 5.48 -17.43 -0.10 -0.40 16 23 N -0.92 -27.46 10.26 55.49 0.57 -26.89 16 24 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.11 2.49 6.30 -3.23 -0.02 2.47 16 29 C 0.11 2.02 3.41 -68.44 -0.23 1.79 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.30 8.14 -51.92 -0.42 -0.13 16 33 H 0.05 0.31 8.14 -51.94 -0.42 -0.11 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 42 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.96 6.41 -51.93 -0.33 0.62 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 1.11 6.82 -51.93 -0.35 0.75 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 1.41 7.49 -51.93 -0.39 1.02 16 49 H 0.06 1.51 5.74 -51.93 -0.30 1.21 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.09 2.08 4.80 -52.46 -0.25 1.83 16 52 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -33.48 399.61 -9.73 -43.22 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -9.07 Total: -0.90 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -0.89 Total: 7.07 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.53 Total: -53.50 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.27 Total: -16.81 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.48 -9.73 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218976066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.350 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds